Rh2DG610900

Belongs to the complex I LYR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0012215
Physical Location & Seq
Reverse (-)
84353133 .. 84354540
1408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG610900.1

Sequence Viewer

Length: 309 bp
ATGAGTGTAGCAGCGGCTTCAGCTCCGTCGCGAGCGGAGGTCCTCCATCTCTACCGCTCCTTCCTCCGCGTCGCTCGAAAATTCCCAGACTACAACATCCGAGAGTACACCAAACGCAGAGCCGTCGACGCCTTTCACCACAACCGAGACCTCTCCGACCCGTCGGCGATTTCCTCCGCCTTCTCCGACGGCAAGGCTCAGCTCGAGGTCGCCACTCGACAGGCGGTGGTTTACTCTCTCTACGCGCCCAAGCTCAAGAGCGTCATGGAGGCACAGATTCCCGTCCACAGGTCGGAGTGCACTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Complex1_LYR

Protein Analysis

102

Amino Acids

11.47

Weight (kDa)

9.46

Isoelectric Point (pI)

60.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Complex1_LYR PF05347 13 - 70 2.4e-22 Complex 1 protein (LYR family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 35, 57
AccI GTMKAC 1 cut(s) 126
AccII CGCG 3 cut(s) 31, 69, 245
AciI CCGC 6 cut(s) 14, 35, 55, 67, 177, 224
AcsI RAATTY 1 cut(s) 80
AcyI GRCGYC 1 cut(s) 129
AfaI GTAC 1 cut(s) 107
AfiI CCNNNNNNNGG 2 cut(s) 288, 292
AluBI AGCT 3 cut(s) 23, 202, 253
AluI AGCT 3 cut(s) 23, 202, 253
Alw21I GWGCWC 1 cut(s) 302
Alw26I GTCTC 1 cut(s) 141
Alw44I GTGCAC 1 cut(s) 298
Ama87I CYCGRG 1 cut(s) 203
ApaLI GTGCAC 1 cut(s) 298
ApeKI GCWGC 1 cut(s) 11
ApoI RAATTY 1 cut(s) 80
AspLEI GCGC 1 cut(s) 247
AspS9I GGNCC 1 cut(s) 40
AsuHPI GGTGA 1 cut(s) 128
AvaI CYCGRG 1 cut(s) 203
AvaII GGWCC 1 cut(s) 40
BaeGI GKGCMC 1 cut(s) 302
Bbv12I GWGCWC 1 cut(s) 302
BbvI GCAGC 1 cut(s) 23
BccI CCATC 1 cut(s) 54
BceAI ACGGC 2 cut(s) 107, 205
BcgI CGANNNNNNTGC 2 cut(s) 106, 140
BcoDI GTCTC 1 cut(s) 141
BisI GCNGC 2 cut(s) 12, 15
BlpI GCTNAGC 1 cut(s) 198
BlsI GCNGC 2 cut(s) 13, 16
Bme18I GGWCC 1 cut(s) 40
BmeT110I CYCGRG 1 cut(s) 203
BmgT120I GGNCC 1 cut(s) 40
Bpu1102I GCTNAGC 1 cut(s) 198
BpuEI CTTGAG 1 cut(s) 239
BsaHI GRCGYC 1 cut(s) 129
BsaI GGTCTC 1 cut(s) 141
Bsc4I CCNNNNNNNGG 2 cut(s) 288, 292
BseGI GGATG 1 cut(s) 96
BseLI CCNNNNNNNGG 2 cut(s) 288, 292
BseMII CTCAG 1 cut(s) 212
BseSI GKGCMC 1 cut(s) 302
BseXI GCAGC 1 cut(s) 23
Bsh1236I CGCG 3 cut(s) 31, 69, 245
BsiHKAI GWGCWC 1 cut(s) 302
BsiHKCI CYCGRG 1 cut(s) 203
BslI CCNNNNNNNGG 2 cut(s) 288, 292
BsmAI GTCTC 1 cut(s) 141
Bso31I GGTCTC 1 cut(s) 141
BsoBI CYCGRG 1 cut(s) 203
Bsp1286I GDGCHC 1 cut(s) 302
Bsp1720I GCTNAGC 1 cut(s) 198
Bsp68I TCGCGA 1 cut(s) 31
BspACI CCGC 6 cut(s) 14, 35, 55, 67, 177, 224
BspCNI CTCAG 1 cut(s) 211
BspFNI CGCG 3 cut(s) 31, 69, 245
BspTNI GGTCTC 1 cut(s) 141
BsrBI CCGCTC 2 cut(s) 35, 57
BssNI GRCGYC 1 cut(s) 129
BstACI GRCGYC 1 cut(s) 129
BstC8I GCNNGC 1 cut(s) 33
BstDEI CTNAG 1 cut(s) 198
BstF5I GGATG 1 cut(s) 96
BstFNI CGCG 3 cut(s) 31, 69, 245
BstHHI GCGC 1 cut(s) 247
BstMAI GTCTC 1 cut(s) 141
BstMWI GCNNNNNNNGC 2 cut(s) 20, 128
BstSLI GKGCMC 1 cut(s) 302
BstUI CGCG 3 cut(s) 31, 69, 245
BstV1I GCAGC 1 cut(s) 23
BtsCI GGATG 1 cut(s) 96
BtsIMutI CAGTG 1 cut(s) 300
BtuMI TCGCGA 1 cut(s) 31
Cac8I GCNNGC 1 cut(s) 33
CfoI GCGC 1 cut(s) 247
Cfr13I GGNCC 1 cut(s) 40
CseI GACGC 3 cut(s) 58, 137, 250
Csp6I GTAC 1 cut(s) 106
CviAII CATG 1 cut(s) 265
CviJI RGCY 6 cut(s) 17, 23, 122, 197, 202, 253
CviKI_1 RGCY 6 cut(s) 17, 23, 122, 197, 202, 253
CviQI GTAC 1 cut(s) 106
DdeI CTNAG 1 cut(s) 198
EciI GGCGGA 1 cut(s) 166
Eco31I GGTCTC 1 cut(s) 141
Eco47I GGWCC 1 cut(s) 40
Eco88I CYCGRG 1 cut(s) 203
EcoO109I RGGNCCY 1 cut(s) 40
FaeI CATG 1 cut(s) 268
FaiI YATR 1 cut(s) 266
FatI CATG 1 cut(s) 264
FblI GTMKAC 1 cut(s) 126
Fnu4HI GCNGC 2 cut(s) 12, 15
FokI GGATG 1 cut(s) 83
Fsp4HI GCNGC 2 cut(s) 12, 15
GlaI GCGC 1 cut(s) 246
GluI GCNGC 2 cut(s) 12, 15
HgaI GACGC 3 cut(s) 58, 137, 250
HhaI GCGC 1 cut(s) 247
Hin1I GRCGYC 1 cut(s) 129
Hin1II CATG 1 cut(s) 268
Hin6I GCGC 1 cut(s) 245
HinP1I GCGC 1 cut(s) 245
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HinfI GANTC 1 cut(s) 277
HphI GGTGA 1 cut(s) 128
Hpy166II GTNNAC 5 cut(s) 108, 127, 232, 286, 300
Hpy188I TCNGA 4 cut(s) 101, 157, 187, 295
Hpy188III TCNNGA 2 cut(s) 30, 256
Hpy8I GTNNAC 5 cut(s) 108, 127, 232, 286, 300
Hpy99I CGWCG 6 cut(s) 31, 74, 128, 131, 166, 191
HpyAV CCTTC 2 cut(s) 70, 190
HpyCH4V TGCA 1 cut(s) 300
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 128
HpyF3I CTNAG 1 cut(s) 198
Hsp92I GRCGYC 1 cut(s) 129
Hsp92II CATG 1 cut(s) 268
HspAI GCGC 1 cut(s) 245
LmnI GCTCC 2 cut(s) 28, 62
LpnPI CCDG 3 cut(s) 99, 206, 274
Lsp1109I GCAGC 1 cut(s) 23
MbiI CCGCTC 2 cut(s) 35, 57
MhlI GDGCHC 1 cut(s) 302
MluCI AATT 1 cut(s) 80
MmeI TCCRAC 3 cut(s) 180, 210, 273
MnlI CCTC 7 cut(s) 31, 53, 74, 161, 184, 199, 262
MspA1I CMGCKG 1 cut(s) 14
MvnI CGCG 3 cut(s) 31, 69, 245
MwoI GCNNNNNNNGC 2 cut(s) 20, 128
NlaIII CATG 1 cut(s) 268
NruI TCGCGA 1 cut(s) 31
PaeR7I CTCGAG 1 cut(s) 203
PfeI GAWTC 1 cut(s) 277
PkrI GCNGC 2 cut(s) 13, 16
PpuMI RGGWCCY 1 cut(s) 40
Psp5II RGGWCCY 1 cut(s) 40
PspPI GGNCC 1 cut(s) 40
PspPPI RGGWCCY 1 cut(s) 40
PspXI VCTCGAGB 1 cut(s) 203
RruI TCGCGA 1 cut(s) 31
RsaI GTAC 1 cut(s) 107
RsaNI GTAC 1 cut(s) 106
SalI GTCGAC 1 cut(s) 125
SatI GCNGC 2 cut(s) 12, 15
Sau96I GGNCC 1 cut(s) 40
SduI GDGCHC 1 cut(s) 302
SetI ASST 7 cut(s) 25, 42, 153, 204, 210, 255, 293
Sfr274I CTCGAG 1 cut(s) 203
SgrDI CGTCGACG 1 cut(s) 125
SinI GGWCC 1 cut(s) 40
SlaI CTCGAG 1 cut(s) 203
SmlI CTYRAG 2 cut(s) 203, 254
SmoI CTYRAG 2 cut(s) 203, 254
Sse9I AATT 1 cut(s) 80
SsiI CCGC 6 cut(s) 14, 35, 55, 67, 177, 224
TaqI TCGA 4 cut(s) 76, 126, 204, 217
TasI AATT 1 cut(s) 80
TatI WGTACW 1 cut(s) 105
TauI GCSGC 1 cut(s) 17
TfiI GAWTC 1 cut(s) 277
TscAI CASTG 1 cut(s) 307
TseI GCWGC 1 cut(s) 11
TspGWI ACGGA 1 cut(s) 15
TspRI CASTG 1 cut(s) 307
VneI GTGCAC 1 cut(s) 298
VpaK11BI GGWCC 1 cut(s) 40
XapI RAATTY 1 cut(s) 80
XhoI CTCGAG 1 cut(s) 203
XmiI GTMKAC 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.