AT5G61620
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0014293
Physical Location & Seq
Forward (+)
24772326 .. 24773507
1182 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G61620.1

Sequence Viewer

Length: 954 bp
ATGGTGAAGGAGACGGTGACGGTGGCGAAAACGTGCTCACACTGTGGCCATAATGGCCATAACGCACGGACTTGTCTCAACGGCGTTAATAAGGCAAGTGTTAAACTGTTCGGCGTTAATATATCGTCTGATCCGATTAGGCCGCCTGAGGTAACGGCGTTAAGGAAGAGTCTTAGTTTGGGAAACCTTGATGCTCTTCTCGCTAACGATGAAAGTAACGGTAGCGGTGATCCTATCGCCGCCGTTGATGATACCGGTTATCATTCCGATGGTCAGATTCATTCCAAGAAGGGTAAAACTGCTCATGAGAAGAAAAAGGGGAAGCCATGGACGGAAGAAGAACATCGTAATTTCTTAATCGGTTTAAACAAACTCGGAAAAGGAGATTGGAGAGGCATTGCAAAGAGTTTCGTGTCGACAAGAACACCAACACAAGTCGCAAGTCATGCTCAGAAATATTTTATTAGGTTAAACGTTAACGACAAGAGAAAAAGACGTGCTAGTCTCTTTGACATCTCTCTCGAAGATCAGAAGGAGAAAGAGAGGAACTCTCAAGATGCTTCAACAAAGACTCCACCTAAACAACCAATAACCGGAATTCAACAACCGGTAGTACAAGGTCATACTCAAACCGAGATTTCGAACAGGTTTCAGAATTTATCAATGGAGTATATGCCAATCTACCAACCCATACCACCTTACTACAACTTTCCACCTATTATGTACCATCCAAATTATCCAATGTACTATGCCAACCCTCAAGTACCGGTTAGGTTTGTTCATCCTTCTGGTATACCTGTTCCAAGACATATACCGATTGGTTTGCCTCTGTCTCAACCGAGTGAAGCTTCTAATATGACAAATAAAGACGGTTTGGATCTTCATATCGGTTTGCCTCCACAAGCTACTGGAGCTTCTGACTTGACTGGTCATGGCGTTATTCATGTGAAATGA

Protein Analysis

317

Amino Acids

35.01

Weight (kDa)

9.4

Isoelectric Point (pI)

41.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 108 - 154 3.1e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014293)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G61620
fragaria_vesca FvH4_7g26850
malus_domestica MD01G1176700.v1.1 MD07G1247900.v1.1
prunus_persica Prupe.2G271900_v2.0.a1 Prupe.2G271900_v2.0.a1
pyrus_communis pycom01g18740
rosa_chinensis RchiOBHm_Chr1g0373541
rosa_laevigata RLG00000026817
rosa_roxburghii Rroxscaffold_4G00284160
rosa_rugosa Rorug01G0378000 Rorug01G0378000
rosa_samantha Rh1AG387400 Rh1BG351800 Rh1CG364500 Rh1DG382200
rosa_wichuraiana Rw1G034790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 501
AccI GTMKAC 2 cut(s) 416, 793
AciI CCGC 3 cut(s) 143, 225, 240
AclI AACGTT 1 cut(s) 474
AclWI GGATC 3 cut(s) 125, 224, 885
AcoI YGGCCR 2 cut(s) 46, 55
AcsI RAATTY 2 cut(s) 597, 655
AdeI CACNNNGTG 1 cut(s) 44
AfaI GTAC 4 cut(s) 615, 725, 746, 765
AfiI CCNNNNNNNGG 1 cut(s) 593
AgeI ACCGGT 3 cut(s) 254, 607, 766
AgsI TTSAA 2 cut(s) 564, 602
AjiI CACGTC 1 cut(s) 497
AjuI GAANNNNNNNTTGG 2 cut(s) 370, 402
AluBI AGCT 3 cut(s) 848, 905, 914
AluI AGCT 3 cut(s) 848, 905, 914
Alw21I GWGCWC 1 cut(s) 38
Alw26I GTCTC 4 cut(s) 5, 80, 509, 837
AlwI GGATC 3 cut(s) 125, 224, 885
AoxI GGCC 3 cut(s) 46, 55, 140
ApoI RAATTY 2 cut(s) 597, 655
AsiGI ACCGGT 3 cut(s) 254, 607, 766
AsuHPI GGTGA 3 cut(s) 16, 28, 239
AsuII TTCGAA 1 cut(s) 641
AxyI CCTNAGG 1 cut(s) 147
BalI TGGCCA 2 cut(s) 48, 57
Bbv12I GWGCWC 1 cut(s) 38
BccI CCATC 2 cut(s) 263, 735
BceAI ACGGC 3 cut(s) 97, 171, 227
BcgI CGANNNNNNTGC 2 cut(s) 805, 839
BcoDI GTCTC 4 cut(s) 5, 80, 509, 837
BfaI CTAG 1 cut(s) 501
BglI GCCNNNNNGGC 1 cut(s) 54
BisI GCNGC 2 cut(s) 143, 240
BlsI GCNGC 2 cut(s) 144, 241
BmgBI CACGTC 1 cut(s) 497
BmsI GCATC 2 cut(s) 181, 547
BplI GAGNNNNNCTC 4 cut(s) 533, 565, 535, 567
BpmI CTGGAG 1 cut(s) 930
Bpu14I TTCGAA 1 cut(s) 641
BpuEI CTTGAG 2 cut(s) 537, 744
BsaJI CCNNGG 1 cut(s) 326
BsaWI WCCGGW 4 cut(s) 254, 593, 607, 766
BsaXI ACNNNNNCTCC 2 cut(s) 556, 586
Bsc4I CCNNNNNNNGG 1 cut(s) 593
Bse118I RCCGGY 3 cut(s) 254, 607, 766
Bse1I ACTGG 2 cut(s) 913, 931
Bse21I CCTNAGG 1 cut(s) 147
Bse3DI GCAATG 1 cut(s) 396
BseDI CCNNGG 1 cut(s) 326
BseGI GGATG 2 cut(s) 727, 781
BseLI CCNNNNNNNGG 1 cut(s) 593
BseMI GCAATG 1 cut(s) 396
BseMII CTCAG 2 cut(s) 138, 464
BseNI ACTGG 2 cut(s) 913, 931
BshFI GGCC 3 cut(s) 48, 57, 142
BshTI ACCGGT 3 cut(s) 254, 607, 766
BsiHKAI GWGCWC 1 cut(s) 38
BsiSI CCGG 4 cut(s) 255, 594, 608, 767
BslI CCNNNNNNNGG 1 cut(s) 593
BsmAI GTCTC 4 cut(s) 5, 80, 509, 837
BsmBI CGTCTC 1 cut(s) 5
BsnI GGCC 3 cut(s) 48, 57, 142
Bsp119I TTCGAA 1 cut(s) 641
Bsp1286I GDGCHC 1 cut(s) 38
Bsp143I GATC 4 cut(s) 130, 229, 526, 877
Bsp19I CCATGG 1 cut(s) 326
BspACI CCGC 3 cut(s) 143, 225, 240
BspANI GGCC 3 cut(s) 48, 57, 142
BspCNI CTCAG 2 cut(s) 139, 463
BspHI TCATGA 1 cut(s) 304
BspPI GGATC 3 cut(s) 125, 224, 885
BspQI GCTCTTC 1 cut(s) 201
BspT104I TTCGAA 1 cut(s) 641
BsrDI GCAATG 1 cut(s) 396
BsrFI RCCGGY 3 cut(s) 254, 607, 766
BsrI ACTGG 2 cut(s) 913, 931
BssAI RCCGGY 3 cut(s) 254, 607, 766
BssECI CCNNGG 1 cut(s) 326
BssMI GATC 4 cut(s) 130, 229, 526, 877
BssNAI GTATAC 1 cut(s) 794
BssT1I CCWWGG 1 cut(s) 326
Bst1107I GTATAC 1 cut(s) 794
Bst4CI ACNGT 6 cut(s) 16, 22, 44, 108, 221, 872
Bst6I CTCTTC 2 cut(s) 161, 201
BstAPI GCANNNNNTGC 1 cut(s) 446
BstBI TTCGAA 1 cut(s) 641
BstDEI CTNAG 3 cut(s) 147, 173, 450
BstDSI CCRYGG 1 cut(s) 326
BstF5I GGATG 2 cut(s) 727, 781
BstKTI GATC 4 cut(s) 133, 232, 529, 880
BstMAI GTCTC 4 cut(s) 5, 80, 509, 837
BstMBI GATC 4 cut(s) 130, 229, 526, 877
BstMWI GCNNNNNNNGC 4 cut(s) 54, 200, 446, 911
BstX2I RGATCY 1 cut(s) 877
BstYI RGATCY 1 cut(s) 877
BstZ17I GTATAC 1 cut(s) 794
Bsu36I CCTNAGG 1 cut(s) 147
BsuRI GGCC 3 cut(s) 48, 57, 142
BtgI CCRYGG 1 cut(s) 326
BtrI CACGTC 1 cut(s) 497
BtsCI GGATG 2 cut(s) 727, 781
BtsIMutI CAGTG 1 cut(s) 40
CciI TCATGA 1 cut(s) 304
Cfr10I RCCGGY 3 cut(s) 254, 607, 766
Csp6I GTAC 4 cut(s) 614, 724, 745, 764
CspAI ACCGGT 3 cut(s) 254, 607, 766
CviAII CATG 5 cut(s) 305, 327, 446, 932, 944
CviJI RGCY 7 cut(s) 48, 57, 142, 325, 848, 905, 914
CviKI_1 RGCY 7 cut(s) 48, 57, 142, 325, 848, 905, 914
CviQI GTAC 4 cut(s) 614, 724, 745, 764
DdeI CTNAG 3 cut(s) 147, 173, 450
DpnI GATC 4 cut(s) 132, 231, 528, 879
DpnII GATC 4 cut(s) 130, 229, 526, 877
DraI TTTAAA 1 cut(s) 366
DraIII CACNNNGTG 1 cut(s) 44
DrdI GACNNNNNNGTC 1 cut(s) 501
DseDI GACNNNNNNGTC 1 cut(s) 501
EaeI YGGCCR 2 cut(s) 46, 55
Eam1104I CTCTTC 2 cut(s) 161, 201
EarI CTCTTC 2 cut(s) 161, 201
Eco130I CCWWGG 1 cut(s) 326
Eco81I CCTNAGG 1 cut(s) 147
EcoRI GAATTC 1 cut(s) 597
EcoT14I CCWWGG 1 cut(s) 326
ErhI CCWWGG 1 cut(s) 326
Esp3I CGTCTC 1 cut(s) 5
FaeI CATG 5 cut(s) 308, 330, 449, 935, 947
FatI CATG 5 cut(s) 304, 326, 445, 931, 943
FblI GTMKAC 2 cut(s) 416, 793
Fnu4HI GCNGC 2 cut(s) 143, 240
FokI GGATG 2 cut(s) 714, 768
Fsp4HI GCNGC 2 cut(s) 143, 240
FspBI CTAG 1 cut(s) 501
GluI GCNGC 2 cut(s) 143, 240
GsuI CTGGAG 1 cut(s) 930
HaeIII GGCC 3 cut(s) 48, 57, 142
HapII CCGG 4 cut(s) 255, 594, 608, 767
Hin1II CATG 5 cut(s) 308, 330, 449, 935, 947
HincII GTYRAC 2 cut(s) 417, 478
HindII GTYRAC 2 cut(s) 417, 478
HindIII AAGCTT 1 cut(s) 846
HinfI GANTC 3 cut(s) 169, 277, 571
HpaI GTTAAC 1 cut(s) 478
HpaII CCGG 4 cut(s) 255, 594, 608, 767
HphI GGTGA 3 cut(s) 16, 28, 239
Hpy166II GTNNAC 3 cut(s) 417, 478, 794
Hpy188I TCNGA 9 cut(s) 130, 135, 268, 276, 377, 453, 531, 654, 919
Hpy188III TCNNGA 3 cut(s) 305, 521, 554
Hpy8I GTNNAC 3 cut(s) 417, 478, 794
HpyAV CCTTC 3 cut(s) 283, 526, 795
HpyCH4III ACNGT 6 cut(s) 16, 22, 44, 108, 221, 872
HpyCH4IV ACGT 3 cut(s) 32, 474, 496
HpyCH4V TGCA 1 cut(s) 401
HpyF10VI GCNNNNNNNGC 4 cut(s) 54, 200, 446, 911
HpyF3I CTNAG 3 cut(s) 147, 173, 450
HpySE526I ACGT 3 cut(s) 32, 474, 496
Hsp92II CATG 5 cut(s) 308, 330, 449, 935, 947
KspAI GTTAAC 1 cut(s) 478
Kzo9I GATC 4 cut(s) 130, 229, 526, 877
LguI GCTCTTC 1 cut(s) 201
LmnI GCTCC 1 cut(s) 911
LweI GCATC 2 cut(s) 181, 547
MaeI CTAG 1 cut(s) 501
MaeII ACGT 3 cut(s) 32, 474, 496
MaeIII GTNAC 3 cut(s) 16, 151, 215
MalI GATC 4 cut(s) 132, 231, 528, 879
MboI GATC 4 cut(s) 130, 229, 526, 877
MboII GAAGA 7 cut(s) 178, 188, 322, 347, 350, 536, 872
MflI RGATCY 1 cut(s) 877
MhlI GDGCHC 1 cut(s) 38
MlsI TGGCCA 2 cut(s) 48, 57
MluCI AATT 4 cut(s) 349, 597, 655, 733
MluNI TGGCCA 2 cut(s) 48, 57
MlyI GAGTC 2 cut(s) 178, 565
MnlI CCTC 6 cut(s) 142, 386, 537, 768, 837, 906
Mox20I TGGCCA 2 cut(s) 48, 57
MscI TGGCCA 2 cut(s) 48, 57
MseI TTAA 8 cut(s) 87, 102, 117, 161, 356, 365, 470, 477
MslI CAYNNNNRTG 1 cut(s) 267
Msp20I TGGCCA 2 cut(s) 48, 57
MspI CCGG 4 cut(s) 255, 594, 608, 767
MssI GTTTAAAC 1 cut(s) 366
MwoI GCNNNNNNNGC 4 cut(s) 54, 200, 446, 911
NcoI CCATGG 1 cut(s) 326
NdeII GATC 4 cut(s) 130, 229, 526, 877
NlaIII CATG 5 cut(s) 308, 330, 449, 935, 947
NmuCI GTSAC 1 cut(s) 16
NspV TTCGAA 1 cut(s) 641
PagI TCATGA 1 cut(s) 304
PciSI GCTCTTC 1 cut(s) 201
PcsI WCGNNNNNNNCGW 1 cut(s) 131
PfeI GAWTC 1 cut(s) 277
PinAI ACCGGT 3 cut(s) 254, 607, 766
PkrI GCNGC 2 cut(s) 144, 241
PleI GAGTC 2 cut(s) 177, 565
PmeI GTTTAAAC 1 cut(s) 366
PpsI GAGTC 2 cut(s) 177, 565
Psp1406I AACGTT 1 cut(s) 474
PsuI RGATCY 1 cut(s) 877
RsaI GTAC 4 cut(s) 615, 725, 746, 765
RsaNI GTAC 4 cut(s) 614, 724, 745, 764
RseI CAYNNNNRTG 1 cut(s) 267
SalI GTCGAC 1 cut(s) 415
SapI GCTCTTC 1 cut(s) 201
SaqAI TTAA 8 cut(s) 87, 102, 117, 161, 356, 365, 470, 477
SatI GCNGC 2 cut(s) 143, 240
Sau3AI GATC 4 cut(s) 130, 229, 526, 877
SchI GAGTC 2 cut(s) 178, 565
SduI GDGCHC 1 cut(s) 38
SfaNI GCATC 2 cut(s) 181, 547
SfiI GGCCNNNNNGGCC 1 cut(s) 54
SfuI TTCGAA 1 cut(s) 641
SmiMI CAYNNNNRTG 1 cut(s) 267
SmlI CTYRAG 2 cut(s) 552, 759
SmoI CTYRAG 2 cut(s) 552, 759
Sse9I AATT 4 cut(s) 349, 597, 655, 733
SsiI CCGC 3 cut(s) 143, 225, 240
SspI AATATT 1 cut(s) 458
SspMI CTAG 1 cut(s) 501
StyI CCWWGG 1 cut(s) 326
TaaI ACNGT 6 cut(s) 16, 22, 44, 108, 221, 872
TaiI ACGT 3 cut(s) 35, 477, 499
TaqI TCGA 3 cut(s) 416, 522, 641
TasI AATT 4 cut(s) 349, 597, 655, 733
TatI WGTACW 2 cut(s) 613, 744
TauI GCSGC 2 cut(s) 145, 242
TfiI GAWTC 1 cut(s) 277
Tru1I TTAA 8 cut(s) 87, 102, 117, 161, 356, 365, 470, 477
Tru9I TTAA 8 cut(s) 87, 102, 117, 161, 356, 365, 470, 477
TscAI CASTG 1 cut(s) 47
TseFI GTSAC 1 cut(s) 16
Tsp45I GTSAC 1 cut(s) 16
TspDTI ATGAA 5 cut(s) 225, 269, 770, 872, 932
TspGWI ACGGA 2 cut(s) 82, 347
TspRI CASTG 1 cut(s) 47
XapI RAATTY 2 cut(s) 597, 655
XmiI GTMKAC 2 cut(s) 416, 793
XspI CTAG 1 cut(s) 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.