Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0014293

Physical Location & Seq

Genomic Coordinates Reverse (-)

31701198 .. 31703961

Gene Structure 2764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1247900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGATAAGGAATCGGCACGAAAGTGTTCGCATGGTGGTCACAATGGCCACAACTCGAGGACGTGCAACCACGGCCATGGAAATAAAGGAGTTTGCTTGAAGCTTTTCGGCGTGAAAATTATGGAGAAAGAGGAGGATTCTATCAAGAAAAGTTACAGCATGGGGAATCTGCAGGCGGACAGCACCGGAGACCACAACAACAACGCTGCTGCGGCTGATCACGATGCCGGCTACCTCTCCGATGGCCTCATTCATAACAAGCGACACAAGGCCACCCATGAAAGAAAAAAAGGGAGGCCATGGACTGAGGAAGAGCATAGAGTGTTTCTAGCTGGTTTGAAGAAGCTTGGGAAAGGTGATTGGAGAGGAATAGCAAGAAATTTTGTGACCACAAGAACCCCAACCCAGGTTGCTAGTCATGCACAGAAGTATTTCCTCAGGCAGGCTACAAATGATAAGAGGAAACGCAGATCAAGCCTCTTTGACATGCACTTTAAGGAACTCTCTGATCAGGGTCCTCAAGATTCCTCAATTTCACCTACAAAGTCAGCTGATGAAACTTCACCACAGGCTAGCAGCTCTAAAACTATGCCACTGAAAATCAATACAGCCAACAACTCACCACCGGCTAGCAACGTTCCAACTCAGATTCTAAACAGATTCCCACATCTGTGCTTGGATAGCCCCCCAGCTCCTCCTTTTTCTCCAACTTGCACTCTTCCAAATTACCCTGCCATGCCATTTATGATGAGAATTCCAGCAAATGTCCCATACGCCCCAATGACGCACTTTTACAGATCAAGTTACTACCACATGATAAAAAACCATGGTAACTTTCCAACTTGTGCTCCTGTAATTTCTCACCCTTCTGGAATCCCATCATTACCAAGGTCCCTCCCAAGCAGTCCATCCATGGCAGCCGGCCGGATCAGCAGCATGACGTCAGCAGCTGAGAAAGATGCTTTAGAGCTTAAAATTGGGCAGCCTCAGCGTTCTCAAGGGGCAAGCTTGTCTCCCCCTTCATCTTCTGGTGCCATCAGAGTCACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009743 GO:0009744 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0034285 GO:0042221 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

350

Amino Acids

38.19

Weight (kDa)

9.75

Isoelectric Point (pI)

62.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	100 - 145	1.3e-11	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61620
fragaria_vesca	FvH4_7g26850
malus_domestica	MD01G1176700.v1.1 MD07G1247900.v1.1
prunus_persica	Prupe.2G271900_v2.0.a1 Prupe.2G271900_v2.0.a1
pyrus_communis	pycom01g18740
rosa_chinensis	RchiOBHm_Chr1g0373541
rosa_laevigata	RLG00000026817
rosa_roxburghii	Rroxscaffold_4G00284160
rosa_rugosa	Rorug01G0378000 Rorug01G0378000
rosa_samantha	Rh1AG387400 Rh1BG351800 Rh1CG364500 Rh1DG382200
rosa_wichuraiana	Rw1G034790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	944
AccB1I	GGYRCC	1 cut(s)	1031
AciI	CCGC	2 cut(s)	176, 212
AclI	AACGTT	1 cut(s)	636
AclWI	GGATC	1 cut(s)	935
AcoI	YGGCCR	3 cut(s)	46, 73, 922
AcsI	RAATTY	2 cut(s)	379, 753
AcyI	GRCGYC	1 cut(s)	941
AfiI	CCNNNNNNNGG	2 cut(s)	406, 442
AgsI	TTSAA	2 cut(s)	100, 340
AjiI	CACGTC	1 cut(s)	63
AjnI	CCWGG	1 cut(s)	405
AleI	CACNNNNGTG	2 cut(s)	22, 670
AluBI	AGCT	9 cut(s)	103, 332, 346, 551, 579, 692, 950, 970, 1008
AluI	AGCT	9 cut(s)	103, 332, 346, 551, 579, 692, 950, 970, 1008
Alw21I	GWGCWC	1 cut(s)	850
Alw26I	GTCTC	2 cut(s)	183, 1017
AlwI	GGATC	1 cut(s)	935
AlwNI	CAGNNNCTG	1 cut(s)	950
Ama87I	CYCGRG	1 cut(s)	55
AoxI	GGCC	6 cut(s)	46, 73, 244, 270, 296, 922
ApeKI	GCWGC	7 cut(s)	206, 209, 576, 917, 933, 947, 982
ApoI	RAATTY	2 cut(s)	379, 753
Asp700I	GAANNNNTTC	3 cut(s)	25, 104, 431
AspS9I	GGNCC	2 cut(s)	515, 891
AsuHPI	GGTGA	5 cut(s)	368, 528, 555, 612, 854
AsuNHI	GCTAGC	2 cut(s)	572, 629
AvaI	CYCGRG	1 cut(s)	55
AvaII	GGWCC	2 cut(s)	515, 891
AxyI	CCTNAGG	1 cut(s)	437
BalI	TGGCCA	1 cut(s)	48
BanI	GGYRCC	1 cut(s)	1031
Bbv12I	GWGCWC	1 cut(s)	850
BbvCI	CCTCAGC	1 cut(s)	987
BbvI	GCAGC	7 cut(s)	193, 196, 588, 929, 945, 959, 994
BccI	CCATC	4 cut(s)	236, 886, 916, 1043
BceAI	ACGGC	1 cut(s)	88
BciT130I	CCWGG	1 cut(s)	407
BclI	TGATCA	2 cut(s)	217, 508
BcoDI	GTCTC	2 cut(s)	183, 1017
BfaI	CTAG	4 cut(s)	329, 414, 573, 630
BfmI	CTRYAG	1 cut(s)	170
BisI	GCNGC	8 cut(s)	207, 210, 213, 577, 918, 934, 948, 983
BlsI	GCNGC	8 cut(s)	208, 211, 214, 578, 919, 935, 949, 984
Bme1390I	CCNGG	1 cut(s)	407
Bme18I	GGWCC	2 cut(s)	515, 891
BmeT110I	CYCGRG	1 cut(s)	55
BmgBI	CACGTC	1 cut(s)	63
BmgT120I	GGNCC	2 cut(s)	515, 891
BmiI	GGNNCC	3 cut(s)	516, 893, 1033
BmrFI	CCNGG	1 cut(s)	407
BmsI	GCATC	2 cut(s)	214, 949
BmtI	GCTAGC	2 cut(s)	576, 633
Bpu10I	CCTNAGC	1 cut(s)	987
BpuEI	CTTGAG	2 cut(s)	504, 981
BsaHI	GRCGYC	1 cut(s)	941
BsaI	GGTCTC	1 cut(s)	183
BsaJI	CCNNGG	7 cut(s)	70, 76, 299, 405, 826, 887, 912
BsaWI	WCCGGW	1 cut(s)	185
BsaXI	ACNNNNNCTCC	2 cut(s)	832, 862
Bsc4I	CCNNNNNNNGG	2 cut(s)	406, 442
Bse118I	RCCGGY	3 cut(s)	227, 625, 920
Bse21I	CCTNAGG	1 cut(s)	437
BseBI	CCWGG	1 cut(s)	407
BseDI	CCNNGG	7 cut(s)	70, 76, 299, 405, 826, 887, 912
BseGI	GGATG	1 cut(s)	908
BseLI	CCNNNNNNNGG	2 cut(s)	406, 442
BseMII	CTCAG	5 cut(s)	297, 451, 659, 942, 1001
BseRI	GAGGAG	2 cut(s)	146, 684
BseX3I	CGGCCG	1 cut(s)	922
BseXI	GCAGC	7 cut(s)	193, 196, 588, 929, 945, 959, 994
BseYI	CCCAGC	1 cut(s)	688
Bsh1285I	CGRYCG	1 cut(s)	925
BshFI	GGCC	6 cut(s)	48, 75, 246, 272, 298, 924
BshNI	GGYRCC	1 cut(s)	1031
BsiEI	CGRYCG	1 cut(s)	925
BsiHKAI	GWGCWC	1 cut(s)	850
BsiHKCI	CYCGRG	1 cut(s)	55
BsiSI	CCGG	5 cut(s)	186, 228, 626, 921, 925
BslFI	GGGAC	2 cut(s)	752, 877
BslI	CCNNNNNNNGG	2 cut(s)	406, 442
BsmAI	GTCTC	2 cut(s)	183, 1017
BsmFI	GGGAC	2 cut(s)	752, 877
BsnI	GGCC	6 cut(s)	48, 75, 246, 272, 298, 924
Bso31I	GGTCTC	1 cut(s)	183
BsoBI	CYCGRG	1 cut(s)	55
Bsp1286I	GDGCHC	1 cut(s)	850
Bsp143I	GATC	5 cut(s)	217, 470, 508, 797, 927
Bsp19I	CCATGG	4 cut(s)	76, 299, 826, 912
BspACI	CCGC	2 cut(s)	176, 212
BspANI	GGCC	6 cut(s)	48, 75, 246, 272, 298, 924
BspCNI	CTCAG	5 cut(s)	298, 450, 658, 943, 1000
BspLI	GGNNCC	3 cut(s)	516, 893, 1033
BspMAI	CTGCAG	1 cut(s)	174
BspOI	GCTAGC	2 cut(s)	576, 633
BspPI	GGATC	1 cut(s)	935
BspQI	GCTCTTC	1 cut(s)	306
BspT107I	GGYRCC	1 cut(s)	1031
BspTNI	GGTCTC	1 cut(s)	183
BsrFI	RCCGGY	3 cut(s)	227, 625, 920
BssAI	RCCGGY	3 cut(s)	227, 625, 920
BssECI	CCNNGG	7 cut(s)	70, 76, 299, 405, 826, 887, 912
BssMI	GATC	5 cut(s)	217, 470, 508, 797, 927
BssNI	GRCGYC	1 cut(s)	941
BssT1I	CCWWGG	5 cut(s)	76, 299, 826, 887, 912
Bst2UI	CCWGG	1 cut(s)	407
Bst6I	CTCTTC	2 cut(s)	306, 723
BstACI	GRCGYC	1 cut(s)	941
BstC8I	GCNNGC	7 cut(s)	174, 229, 444, 574, 631, 922, 1006
BstDEI	CTNAG	5 cut(s)	306, 437, 645, 951, 987
BstDSI	CCRYGG	5 cut(s)	70, 76, 299, 826, 912
BstENI	CCTNNNNNAGG	1 cut(s)	440
BstF5I	GGATG	1 cut(s)	908
BstKTI	GATC	5 cut(s)	220, 473, 511, 800, 930
BstMAI	GTCTC	2 cut(s)	183, 1017
BstMBI	GATC	5 cut(s)	217, 470, 508, 797, 927
BstMCI	CGRYCG	1 cut(s)	925
BstMWI	GCNNNNNNNGC	7 cut(s)	72, 212, 419, 474, 681, 930, 988
BstNI	CCWGG	1 cut(s)	407
BstNSI	RCATGY	1 cut(s)	490
BstSCI	CCNGG	1 cut(s)	405
BstSFI	CTRYAG	1 cut(s)	170
BstV1I	GCAGC	7 cut(s)	193, 196, 588, 929, 945, 959, 994
BstXI	CCANNNNNNTGG	1 cut(s)	77
BstZI	CGGCCG	1 cut(s)	922
Bsu36I	CCTNAGG	1 cut(s)	437
BsuRI	GGCC	6 cut(s)	48, 75, 246, 272, 298, 924
BtgI	CCRYGG	5 cut(s)	70, 76, 299, 826, 912
BtrI	CACGTC	1 cut(s)	63
BtsCI	GGATG	1 cut(s)	908
BtsIMutI	CAGTG	1 cut(s)	593
Cac8I	GCNNGC	7 cut(s)	174, 229, 444, 574, 631, 922, 1006
CaiI	CAGNNNCTG	1 cut(s)	950
Cfr10I	RCCGGY	3 cut(s)	227, 625, 920
Cfr13I	GGNCC	2 cut(s)	515, 891
CseI	GACGC	1 cut(s)	793
DdeI	CTNAG	5 cut(s)	306, 437, 645, 951, 987
DpnI	GATC	5 cut(s)	219, 472, 510, 799, 929
DpnII	GATC	5 cut(s)	217, 470, 508, 797, 927
EaeI	YGGCCR	3 cut(s)	46, 73, 922
EagI	CGGCCG	1 cut(s)	922
Eam1104I	CTCTTC	2 cut(s)	306, 723
EarI	CTCTTC	2 cut(s)	306, 723
EciI	GGCGGA	1 cut(s)	191
EclXI	CGGCCG	1 cut(s)	922
Eco130I	CCWWGG	5 cut(s)	76, 299, 826, 887, 912
Eco31I	GGTCTC	1 cut(s)	183
Eco47I	GGWCC	2 cut(s)	515, 891
Eco52I	CGGCCG	1 cut(s)	922
Eco81I	CCTNAGG	1 cut(s)	437
Eco88I	CYCGRG	1 cut(s)	55
EcoNI	CCTNNNNNAGG	1 cut(s)	440
EcoO109I	RGGNCCY	2 cut(s)	515, 891
EcoRI	GAATTC	1 cut(s)	753
EcoRII	CCWGG	1 cut(s)	405
EcoT14I	CCWWGG	5 cut(s)	76, 299, 826, 887, 912
ErhI	CCWWGG	5 cut(s)	76, 299, 826, 887, 912
FaqI	GGGAC	2 cut(s)	752, 877
FbaI	TGATCA	2 cut(s)	217, 508
Fnu4HI	GCNGC	8 cut(s)	207, 210, 213, 577, 918, 934, 948, 983
FokI	GGATG	1 cut(s)	895
Fsp4HI	GCNGC	8 cut(s)	207, 210, 213, 577, 918, 934, 948, 983
FspBI	CTAG	4 cut(s)	329, 414, 573, 630
GluI	GCNGC	8 cut(s)	207, 210, 213, 577, 918, 934, 948, 983
GsaI	CCCAGC	1 cut(s)	692
HaeIII	GGCC	6 cut(s)	48, 75, 246, 272, 298, 924
HapII	CCGG	5 cut(s)	186, 228, 626, 921, 925
HgaI	GACGC	1 cut(s)	793
Hin1I	GRCGYC	1 cut(s)	941
HindIII	AAGCTT	3 cut(s)	101, 344, 1006
HinfI	GANTC	8 cut(s)	11, 137, 166, 524, 649, 660, 873, 1041
HpaII	CCGG	5 cut(s)	186, 228, 626, 921, 925
HphI	GGTGA	5 cut(s)	368, 528, 555, 612, 854
Hpy188I	TCNGA	4 cut(s)	241, 508, 648, 1040
Hpy188III	TCNNGA	4 cut(s)	145, 221, 521, 870
HpyAV	CCTTC	2 cut(s)	876, 1029
HpyCH4IV	ACGT	3 cut(s)	62, 636, 941
HpyCH4V	TGCA	5 cut(s)	66, 172, 422, 490, 714
HpyF10VI	GCNNNNNNNGC	7 cut(s)	72, 212, 419, 474, 681, 930, 988
HpyF3I	CTNAG	5 cut(s)	306, 437, 645, 951, 987
HpySE526I	ACGT	3 cut(s)	62, 636, 941
Hsp92I	GRCGYC	1 cut(s)	941
KroI	GCCGGC	2 cut(s)	227, 920
KroNI	GCCGGC	2 cut(s)	229, 922
Ksp22I	TGATCA	2 cut(s)	217, 508
Kzo9I	GATC	5 cut(s)	217, 470, 508, 797, 927
LguI	GCTCTTC	1 cut(s)	306
LmnI	GCTCC	2 cut(s)	697, 853
Lsp1109I	GCAGC	7 cut(s)	193, 196, 588, 929, 945, 959, 994
LweI	GCATC	2 cut(s)	214, 949
MaeI	CTAG	4 cut(s)	329, 414, 573, 630
MaeII	ACGT	3 cut(s)	62, 636, 941
MaeIII	GTNAC	6 cut(s)	38, 152, 385, 803, 830, 1042
MalI	GATC	5 cut(s)	219, 472, 510, 799, 929
MboI	GATC	5 cut(s)	217, 470, 508, 797, 927
MboII	GAAGA	4 cut(s)	323, 352, 710, 1017
MhlI	GDGCHC	1 cut(s)	850
MlsI	TGGCCA	1 cut(s)	48
MluCI	AATT	7 cut(s)	117, 379, 531, 724, 753, 855, 975
MluNI	TGGCCA	1 cut(s)	48
MlyI	GAGTC	1 cut(s)	1050
MmeI	TCCRAC	3 cut(s)	665, 731, 863
Mox20I	TGGCCA	1 cut(s)	48
MroNI	GCCGGC	2 cut(s)	227, 920
MroXI	GAANNNNTTC	3 cut(s)	25, 104, 431
MscI	TGGCCA	1 cut(s)	48
MseI	TTAA	2 cut(s)	495, 972
MslI	CAYNNNNRTG	3 cut(s)	22, 75, 670
Msp20I	TGGCCA	1 cut(s)	48
MspA1I	CMGCKG	2 cut(s)	551, 950
MspI	CCGG	5 cut(s)	186, 228, 626, 921, 925
MspR9I	CCNGG	1 cut(s)	407
MvaI	CCWGG	1 cut(s)	407
MwoI	GCNNNNNNNGC	7 cut(s)	72, 212, 419, 474, 681, 930, 988
NaeI	GCCGGC	2 cut(s)	229, 922
NcoI	CCATGG	4 cut(s)	76, 299, 826, 912
NdeII	GATC	5 cut(s)	217, 470, 508, 797, 927
NgoMIV	GCCGGC	2 cut(s)	227, 920
NheI	GCTAGC	2 cut(s)	572, 629
NlaIV	GGNNCC	3 cut(s)	516, 893, 1033
NmuCI	GTSAC	3 cut(s)	38, 385, 1042
NspI	RCATGY	1 cut(s)	490
OliI	CACNNNNGTG	2 cut(s)	22, 670
PaeR7I	CTCGAG	1 cut(s)	55
PciSI	GCTCTTC	1 cut(s)	306
PdiI	GCCGGC	2 cut(s)	229, 922
PdmI	GAANNNNTTC	3 cut(s)	25, 104, 431
PfeI	GAWTC	7 cut(s)	11, 137, 166, 524, 649, 660, 873
PkrI	GCNGC	8 cut(s)	208, 211, 214, 578, 919, 935, 949, 984
PleI	GAGTC	1 cut(s)	1049
PpsI	GAGTC	1 cut(s)	1049
PpuMI	RGGWCCY	2 cut(s)	515, 891
Psp1406I	AACGTT	1 cut(s)	636
Psp5II	RGGWCCY	2 cut(s)	515, 891
Psp6I	CCWGG	1 cut(s)	405
PspFI	CCCAGC	1 cut(s)	688
PspGI	CCWGG	1 cut(s)	405
PspN4I	GGNNCC	3 cut(s)	516, 893, 1033
PspPI	GGNCC	2 cut(s)	515, 891
PspPPI	RGGWCCY	2 cut(s)	515, 891
PspXI	VCTCGAGB	1 cut(s)	55
PstI	CTGCAG	1 cut(s)	174
PstNI	CAGNNNCTG	1 cut(s)	950
PvuII	CAGCTG	2 cut(s)	551, 950
RseI	CAYNNNNRTG	3 cut(s)	22, 75, 670
SapI	GCTCTTC	1 cut(s)	306
SaqAI	TTAA	2 cut(s)	495, 972
SatI	GCNGC	8 cut(s)	207, 210, 213, 577, 918, 934, 948, 983
Sau3AI	GATC	5 cut(s)	217, 470, 508, 797, 927
Sau96I	GGNCC	2 cut(s)	515, 891
SchI	GAGTC	1 cut(s)	1050
ScrFI	CCNGG	1 cut(s)	407
SduI	GDGCHC	1 cut(s)	850
SfaNI	GCATC	2 cut(s)	214, 949
SfcI	CTRYAG	1 cut(s)	170
Sfr274I	CTCGAG	1 cut(s)	55
SinI	GGWCC	2 cut(s)	515, 891
SlaI	CTCGAG	1 cut(s)	55
SmiMI	CAYNNNNRTG	3 cut(s)	22, 75, 670
SmlI	CTYRAG	3 cut(s)	55, 519, 996
SmoI	CTYRAG	3 cut(s)	55, 519, 996
Sse9I	AATT	7 cut(s)	117, 379, 531, 724, 753, 855, 975
SsiI	CCGC	2 cut(s)	176, 212
SspMI	CTAG	4 cut(s)	329, 414, 573, 630
StyD4I	CCNGG	1 cut(s)	405
StyI	CCWWGG	5 cut(s)	76, 299, 826, 887, 912
TaiI	ACGT	3 cut(s)	65, 639, 944
TaqI	TCGA	1 cut(s)	56
TasI	AATT	7 cut(s)	117, 379, 531, 724, 753, 855, 975
TauI	GCSGC	1 cut(s)	215
TfiI	GAWTC	7 cut(s)	11, 137, 166, 524, 649, 660, 873
Tru1I	TTAA	2 cut(s)	495, 972
Tru9I	TTAA	2 cut(s)	495, 972
TscAI	CASTG	1 cut(s)	600
TseFI	GTSAC	3 cut(s)	38, 385, 1042
TseI	GCWGC	7 cut(s)	206, 209, 576, 917, 933, 947, 982
Tsp45I	GTSAC	3 cut(s)	38, 385, 1042
TspDTI	ATGAA	4 cut(s)	242, 294, 570, 1011
TspRI	CASTG	1 cut(s)	600
VpaK11BI	GGWCC	2 cut(s)	515, 891
XagI	CCTNNNNNAGG	1 cut(s)	440
XapI	RAATTY	2 cut(s)	379, 753
XceI	RCATGY	1 cut(s)	490
XhoI	CTCGAG	1 cut(s)	55
XmnI	GAANNNNTTC	3 cut(s)	25, 104, 431
XspI	CTAG	4 cut(s)	329, 414, 573, 630
ZraI	GACGTC	1 cut(s)	942

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.