Rh1CG364500
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0014293
Physical Location & Seq
Reverse (-)
63677595 .. 63680260
2666 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG364500.1

Sequence Viewer

Length: 804 bp
ATGGTGAAGGAATCGGCACGAAAGTGTTCGCATTGCGGTCACAACGGGCACAATTCTAGGACTTGCAACCACATAGGGCATTTAACCCCCAATAACAACAAGGGGGTTTGTTTGAAGCTTTTTGGGGTGAACATAATGGAAAGACAGGACGATTCTATGAAGAAGAGTTTCAGCATGGGAAATCTCCAGTCTGCCGGAAACGGAGACCAAAACAACAACATCAATGTCGGAGCTGACGATGCCGGCTACCTCTCCGACGGCCTCATCCATAACAAGAAACGCAAAGCCGCCCATGAAAGAAAAAAAGGGAGACCTTGGACTGAGGAAGAGCATAGAGTATTCCTAGCCGGATTGAAAAAGCTTGGGAAAGGCGATTGGAGAGGTATTGCAAGAAATTTTGTGACAACTAGAACCCCAACACAGGTTGCAAGTCATGCACAGAAGTACTTTCTTAGGCAGGCTACCAACGACAAGCGTAAACGAAGAACAAGTCTATTTGATTTGCACTTCAAAGAACTATCTGAACAATGTGCTCATCAAGATTCTCCACTCTCACCGACAGCCAAAACAGCCGAAGCTTCTTCTTCTTCTTCATCACCAGGTAGCAGCTCTAAAGTTCTGCCGCAAATCACTACAACTACGAACTCGCAACAGGCAAGCATGCCAGGTCAGGTCCTGAACCGATTTCCACATCTATGCTTGGATAGCCCCCCACCTGTTGCTCAAATGCCTGCAGCATCTTGCAGTGTTCCTAATTACGCTTCAGTTATCCCATACATGGTAAGTAGATTTCAAGATTACTAG

Protein Analysis

267

Amino Acids

29.45

Weight (kDa)

9.68

Isoelectric Point (pI)

57.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 105 - 150 8.4e-12 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014293)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G61620
fragaria_vesca FvH4_7g26850
malus_domestica MD01G1176700.v1.1 MD07G1247900.v1.1
prunus_persica Prupe.2G271900_v2.0.a1 Prupe.2G271900_v2.0.a1
pyrus_communis pycom01g18740
rosa_chinensis RchiOBHm_Chr1g0373541
rosa_laevigata RLG00000026817
rosa_roxburghii Rroxscaffold_4G00284160
rosa_rugosa Rorug01G0378000 Rorug01G0378000
rosa_samantha Rh1AG387400 Rh1BG351800 Rh1CG364500 Rh1DG382200
rosa_wichuraiana Rw1G034790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 36, 288, 623
AcsI RAATTY 1 cut(s) 394
AcuI CTGAAG 1 cut(s) 747
AfaI GTAC 1 cut(s) 446
AfiI CCNNNNNNNGG 2 cut(s) 421, 778
AgsI TTSAA 4 cut(s) 115, 355, 511, 794
AjnI CCWGG 2 cut(s) 598, 664
AleI CACNNNNGTG 1 cut(s) 22
AluBI AGCT 5 cut(s) 118, 233, 361, 578, 609
AluI AGCT 5 cut(s) 118, 233, 361, 578, 609
Alw21I GWGCWC 1 cut(s) 535
Alw26I GTCTC 2 cut(s) 198, 304
AlwNI CAGNNNCTG 1 cut(s) 676
AoxI GGCC 1 cut(s) 259
ApeKI GCWGC 2 cut(s) 606, 734
ApoI RAATTY 1 cut(s) 394
ArsI GACNNNNNNTTYG 2 cut(s) 475, 507
Asp700I GAANNNNTTC 2 cut(s) 25, 167
AspS9I GGNCC 1 cut(s) 673
AsuHPI GGTGA 4 cut(s) 16, 139, 546, 588
AvaII GGWCC 1 cut(s) 673
BaeGI GKGCMC 1 cut(s) 51
Bbv12I GWGCWC 1 cut(s) 535
BbvI GCAGC 2 cut(s) 618, 746
BceAI ACGGC 1 cut(s) 274
BciT130I CCWGG 2 cut(s) 600, 666
BcoDI GTCTC 2 cut(s) 198, 304
BfaI CTAG 4 cut(s) 57, 344, 408, 802
BfmI CTRYAG 1 cut(s) 732
BisI GCNGC 4 cut(s) 288, 607, 623, 735
BlsI GCNGC 4 cut(s) 289, 608, 624, 736
BmcAI AGTACT 1 cut(s) 446
Bme1390I CCNGG 2 cut(s) 600, 666
Bme18I GGWCC 1 cut(s) 673
BmgT120I GGNCC 1 cut(s) 673
BmrFI CCNGG 2 cut(s) 600, 666
BmsI GCATC 2 cut(s) 229, 746
BpmI CTGGAG 1 cut(s) 170
BsaI GGTCTC 2 cut(s) 198, 304
BsaJI CCNNGG 1 cut(s) 314
Bsc4I CCNNNNNNNGG 2 cut(s) 421, 778
Bse118I RCCGGY 1 cut(s) 242
Bse1I ACTGG 1 cut(s) 187
Bse3DI GCAATG 1 cut(s) 31
BseBI CCWGG 2 cut(s) 600, 666
BseDI CCNNGG 1 cut(s) 314
BseGI GGATG 1 cut(s) 264
BseLI CCNNNNNNNGG 2 cut(s) 421, 778
BseMI GCAATG 1 cut(s) 31
BseMII CTCAG 1 cut(s) 312
BseNI ACTGG 1 cut(s) 187
BseSI GKGCMC 1 cut(s) 51
BseXI GCAGC 2 cut(s) 618, 746
BshFI GGCC 1 cut(s) 261
BsiHKAI GWGCWC 1 cut(s) 535
BsiSI CCGG 3 cut(s) 195, 243, 348
BslI CCNNNNNNNGG 2 cut(s) 421, 778
BsmAI GTCTC 2 cut(s) 198, 304
BsnI GGCC 1 cut(s) 261
Bso31I GGTCTC 2 cut(s) 198, 304
Bsp1286I GDGCHC 2 cut(s) 51, 535
BspACI CCGC 3 cut(s) 36, 288, 623
BspANI GGCC 1 cut(s) 261
BspCNI CTCAG 1 cut(s) 313
BspMAI CTGCAG 1 cut(s) 736
BspQI GCTCTTC 1 cut(s) 321
BspTNI GGTCTC 2 cut(s) 198, 304
BsrDI GCAATG 1 cut(s) 31
BsrFI RCCGGY 1 cut(s) 242
BsrI ACTGG 1 cut(s) 187
BssAI RCCGGY 1 cut(s) 242
BssECI CCNNGG 1 cut(s) 314
BssT1I CCWWGG 1 cut(s) 314
Bst2UI CCWGG 2 cut(s) 600, 666
Bst6I CTCTTC 2 cut(s) 158, 321
BstAPI GCANNNNNTGC 1 cut(s) 434
BstC8I GCNNGC 5 cut(s) 244, 459, 658, 662, 732
BstDEI CTNAG 2 cut(s) 321, 452
BstF5I GGATG 1 cut(s) 264
BstMAI GTCTC 2 cut(s) 198, 304
BstMWI GCNNNNNNNGC 4 cut(s) 239, 434, 569, 705
BstNI CCWGG 2 cut(s) 600, 666
BstNSI RCATGY 1 cut(s) 664
BstSCI CCNGG 2 cut(s) 598, 664
BstSFI CTRYAG 1 cut(s) 732
BstSLI GKGCMC 1 cut(s) 51
BstV1I GCAGC 2 cut(s) 618, 746
BsuRI GGCC 1 cut(s) 261
BtsCI GGATG 1 cut(s) 264
BtsI GCAGTG 1 cut(s) 751
BtsIMutI CAGTG 1 cut(s) 751
Cac8I GCNNGC 5 cut(s) 244, 459, 658, 662, 732
CaiI CAGNNNCTG 1 cut(s) 676
Cfr10I RCCGGY 1 cut(s) 242
Cfr13I GGNCC 1 cut(s) 673
CsiI ACCWGGT 1 cut(s) 598
Csp6I GTAC 1 cut(s) 445
CviAII CATG 5 cut(s) 175, 293, 434, 661, 778
CviQI GTAC 1 cut(s) 445
DdeI CTNAG 2 cut(s) 321, 452
Eam1104I CTCTTC 2 cut(s) 158, 321
EarI CTCTTC 2 cut(s) 158, 321
Eco130I CCWWGG 1 cut(s) 314
Eco31I GGTCTC 2 cut(s) 198, 304
Eco47I GGWCC 1 cut(s) 673
Eco57I CTGAAG 1 cut(s) 747
EcoO109I RGGNCCY 1 cut(s) 673
EcoRII CCWGG 2 cut(s) 598, 664
EcoT14I CCWWGG 1 cut(s) 314
ErhI CCWWGG 1 cut(s) 314
FaeI CATG 5 cut(s) 178, 296, 437, 664, 781
FatI CATG 5 cut(s) 174, 292, 433, 660, 777
Fnu4HI GCNGC 4 cut(s) 288, 607, 623, 735
FokI GGATG 1 cut(s) 251
Fsp4HI GCNGC 4 cut(s) 288, 607, 623, 735
FspBI CTAG 4 cut(s) 57, 344, 408, 802
GluI GCNGC 4 cut(s) 288, 607, 623, 735
GsuI CTGGAG 1 cut(s) 170
HaeIII GGCC 1 cut(s) 261
HapII CCGG 3 cut(s) 195, 243, 348
Hin1II CATG 5 cut(s) 178, 296, 437, 664, 781
HindIII AAGCTT 3 cut(s) 116, 359, 576
HinfI GANTC 3 cut(s) 11, 152, 542
HpaII CCGG 3 cut(s) 195, 243, 348
HphI GGTGA 4 cut(s) 16, 139, 546, 588
Hpy166II GTNNAC 2 cut(s) 130, 479
Hpy188I TCNGA 3 cut(s) 230, 256, 523
Hpy188III TCNNGA 3 cut(s) 539, 676, 794
Hpy8I GTNNAC 2 cut(s) 130, 479
Hpy99I CGWCG 1 cut(s) 260
HpyCH4V TGCA 7 cut(s) 66, 389, 428, 437, 505, 734, 744
HpyF10VI GCNNNNNNNGC 4 cut(s) 239, 434, 569, 705
HpyF3I CTNAG 2 cut(s) 321, 452
Hsp92II CATG 5 cut(s) 178, 296, 437, 664, 781
KroI GCCGGC 1 cut(s) 242
KroNI GCCGGC 1 cut(s) 244
LguI GCTCTTC 1 cut(s) 321
LmnI GCTCC 1 cut(s) 230
Lsp1109I GCAGC 2 cut(s) 618, 746
LweI GCATC 2 cut(s) 229, 746
MabI ACCWGGT 1 cut(s) 598
MaeI CTAG 4 cut(s) 57, 344, 408, 802
MaeIII GTNAC 2 cut(s) 38, 400
MboII GAAGA 8 cut(s) 172, 175, 338, 495, 573, 576, 579, 582
MhlI GDGCHC 2 cut(s) 51, 535
MluCI AATT 3 cut(s) 52, 394, 754
MmeI TCCRAC 2 cut(s) 208, 279
MnlI CCTC 4 cut(s) 260, 272, 316, 374
MroNI GCCGGC 1 cut(s) 242
MroXI GAANNNNTTC 2 cut(s) 25, 167
MseI TTAA 1 cut(s) 83
MslI CAYNNNNRTG 2 cut(s) 22, 694
MspI CCGG 3 cut(s) 195, 243, 348
MspR9I CCNGG 2 cut(s) 600, 666
MvaI CCWGG 2 cut(s) 600, 666
MwoI GCNNNNNNNGC 4 cut(s) 239, 434, 569, 705
NaeI GCCGGC 1 cut(s) 244
NgoMIV GCCGGC 1 cut(s) 242
NlaIII CATG 5 cut(s) 178, 296, 437, 664, 781
NmuCI GTSAC 2 cut(s) 38, 400
NspI RCATGY 1 cut(s) 664
OliI CACNNNNGTG 1 cut(s) 22
PaeI GCATGC 1 cut(s) 664
PciSI GCTCTTC 1 cut(s) 321
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PdiI GCCGGC 1 cut(s) 244
PdmI GAANNNNTTC 2 cut(s) 25, 167
PfeI GAWTC 3 cut(s) 11, 152, 542
PkrI GCNGC 4 cut(s) 289, 608, 624, 736
PpuMI RGGWCCY 1 cut(s) 673
Psp5II RGGWCCY 1 cut(s) 673
Psp6I CCWGG 2 cut(s) 598, 664
PspGI CCWGG 2 cut(s) 598, 664
PspPI GGNCC 1 cut(s) 673
PspPPI RGGWCCY 1 cut(s) 673
PstI CTGCAG 1 cut(s) 736
PstNI CAGNNNCTG 1 cut(s) 676
RsaI GTAC 1 cut(s) 446
RsaNI GTAC 1 cut(s) 445
RseI CAYNNNNRTG 2 cut(s) 22, 694
SapI GCTCTTC 1 cut(s) 321
SaqAI TTAA 1 cut(s) 83
SatI GCNGC 4 cut(s) 288, 607, 623, 735
Sau96I GGNCC 1 cut(s) 673
ScaI AGTACT 1 cut(s) 446
ScrFI CCNGG 2 cut(s) 600, 666
SduI GDGCHC 2 cut(s) 51, 535
SexAI ACCWGGT 1 cut(s) 598
SfaNI GCATC 2 cut(s) 229, 746
SfcI CTRYAG 1 cut(s) 732
SinI GGWCC 1 cut(s) 673
SmiMI CAYNNNNRTG 2 cut(s) 22, 694
SphI GCATGC 1 cut(s) 664
Sse9I AATT 3 cut(s) 52, 394, 754
SsiI CCGC 3 cut(s) 36, 288, 623
SspMI CTAG 4 cut(s) 57, 344, 408, 802
StyD4I CCNGG 2 cut(s) 598, 664
StyI CCWWGG 1 cut(s) 314
TasI AATT 3 cut(s) 52, 394, 754
TatI WGTACW 1 cut(s) 444
TauI GCSGC 2 cut(s) 290, 625
TfiI GAWTC 3 cut(s) 11, 152, 542
Tru1I TTAA 1 cut(s) 83
Tru9I TTAA 1 cut(s) 83
TscAI CASTG 1 cut(s) 751
TseFI GTSAC 2 cut(s) 38, 400
TseI GCWGC 2 cut(s) 606, 734
Tsp45I GTSAC 2 cut(s) 38, 400
TspDTI ATGAA 3 cut(s) 173, 309, 582
TspGWI ACGGA 1 cut(s) 216
TspRI CASTG 1 cut(s) 751
VpaK11BI GGWCC 1 cut(s) 673
XapI RAATTY 1 cut(s) 394
XceI RCATGY 1 cut(s) 664
XmnI GAANNNNTTC 2 cut(s) 25, 167
XspI CTAG 4 cut(s) 57, 344, 408, 802
ZrmI AGTACT 1 cut(s) 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.