Rw1G034790
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0014293
Physical Location & Seq
Forward (+)
62678867 .. 62680832
1966 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G034790.1

Sequence Viewer

Length: 1041 bp
ATGGTGAAGGAATCGGCACGAAAGTGTTCGCATTGCGGTCACAACGGGCACAATTCTAGGACTTGCAACCACATAGGGCATTTAACCCCCAATAACAGCAAGGGGGTTTGTTTGAAGCTTTTTGGGGTGAACATAATGGAAAGACAGGACGATTCTATGAAGAAGAGTTTCAGCATGGGAAATCTCCAGTCTGCTGGAAACGGAGACCAAAACAACAACATCAATGTCGGAGCTGACGATGCCGGCTACCTCTCTGACGGCCTCATCCATAACAAGAAACGCAAAGCCGCCCATGAAAGAAAAAAAGGGAGACCTTGGACTGAGGAAGAGCATAGAGTATTCCTAGCCGGATTGAAAAAGCTTGGGAAAGGCGATTGGAGAGGTATTGCAAGAAATTTTGTGACAACTAGAACCCCAACACAGGTTGCAAGTCATGCACAGAAGTACTTTCTTAGGCAGGCTACCAACGACAAGCGTAAACGAAGAACAAGTCTATTTGATTTGCACTTCAAAGAACTATCTGAACAATGTGCTCATCAAGATTCTCCACTCTCACCGACAGCCAAAACAGCCGAAGCTTCTTCTTCTTCTTCTTCATCACCAGGTAGCAGCTCTAAAGTTCTCATGCCAGGTCAGGTCCTGAACCGATTTCCACATCTATGCTTGGATAGCCCCCCACCTGTTGCTCAAATGCCTGCAGCATCTTGCAGTGTTCCTAATTACGCTCCAGTTATCCCATACATGGTGGGAATGCCTGGGACTGTACCATATACAGCAGCAATGCACTATGGCAGTCCAACTTTCCACTACATTCTTAAGACGCAGGGTGGTAGTTTCGCTACATGTCCACCGGTTATTTCTCACCCATCAGGGATTCCATCATCACCGAAGTCTCTCCCAAGCAGTCCGTCGATGGGAGTTCATCGTAGGAACTCGTCGATCTCTAAGAAGGATGCTTTAGAGCTTAAAATTGGGCAGCCACAACCATCTCAAGGAGCCAATTTATCATCCTCTTCTTCTGGGGCAATCAGAGTCACATAG

Protein Analysis

346

Amino Acids

37.35

Weight (kDa)

9.83

Isoelectric Point (pI)

66.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 105 - 150 1.2e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014293)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G61620
fragaria_vesca FvH4_7g26850
malus_domestica MD01G1176700.v1.1 MD07G1247900.v1.1
prunus_persica Prupe.2G271900_v2.0.a1 Prupe.2G271900_v2.0.a1
pyrus_communis pycom01g18740
rosa_chinensis RchiOBHm_Chr1g0373541
rosa_laevigata RLG00000026817
rosa_roxburghii Rroxscaffold_4G00284160
rosa_rugosa Rorug01G0378000 Rorug01G0378000
rosa_samantha Rh1AG387400 Rh1BG351800 Rh1CG364500 Rh1DG382200
rosa_wichuraiana Rw1G034790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 36, 288
AcsI RAATTY 1 cut(s) 394
AfaI GTAC 2 cut(s) 446, 765
AfiI CCNNNNNNNGG 4 cut(s) 421, 742, 914, 992
AflII CTTAAG 1 cut(s) 815
AflIII ACRYGT 1 cut(s) 842
AgeI ACCGGT 1 cut(s) 850
AgsI TTSAA 3 cut(s) 115, 355, 511
AjnI CCWGG 3 cut(s) 601, 628, 754
AleI CACNNNNGTG 1 cut(s) 22
AluBI AGCT 6 cut(s) 118, 233, 361, 578, 612, 964
AluI AGCT 6 cut(s) 118, 233, 361, 578, 612, 964
Alw21I GWGCWC 1 cut(s) 535
Alw26I GTCTC 3 cut(s) 198, 304, 897
AlwNI CAGNNNCTG 1 cut(s) 640
AoxI GGCC 1 cut(s) 259
ApeKI GCWGC 4 cut(s) 609, 698, 776, 976
ApoI RAATTY 1 cut(s) 394
ArsI GACNNNNNNTTYG 2 cut(s) 475, 507
AsiGI ACCGGT 1 cut(s) 850
Asp700I GAANNNNTTC 2 cut(s) 25, 167
AspS9I GGNCC 1 cut(s) 637
AsuHPI GGTGA 6 cut(s) 16, 139, 546, 591, 854, 876
AvaII GGWCC 1 cut(s) 637
BaeGI GKGCMC 1 cut(s) 51
Bbv12I GWGCWC 1 cut(s) 535
BbvI GCAGC 4 cut(s) 621, 710, 788, 988
BccI CCATC 4 cut(s) 874, 886, 907, 994
BceAI ACGGC 1 cut(s) 274
BciT130I CCWGG 3 cut(s) 603, 630, 756
BcoDI GTCTC 3 cut(s) 198, 304, 897
BfaI CTAG 3 cut(s) 57, 344, 408
BfmI CTRYAG 1 cut(s) 696
BfrI CTTAAG 1 cut(s) 815
BisI GCNGC 5 cut(s) 288, 610, 699, 777, 977
BlsI GCNGC 5 cut(s) 289, 611, 700, 778, 978
BmcAI AGTACT 1 cut(s) 446
Bme1390I CCNGG 3 cut(s) 603, 630, 756
Bme18I GGWCC 1 cut(s) 637
BmgT120I GGNCC 1 cut(s) 637
BmiI GGNNCC 1 cut(s) 997
BmrFI CCNGG 3 cut(s) 603, 630, 756
BmsI GCATC 3 cut(s) 229, 710, 943
BpmI CTGGAG 2 cut(s) 170, 711
BpuEI CTTGAG 1 cut(s) 975
BsaI GGTCTC 2 cut(s) 198, 304
BsaJI CCNNGG 2 cut(s) 314, 755
BsaWI WCCGGW 1 cut(s) 850
Bsc4I CCNNNNNNNGG 4 cut(s) 421, 742, 914, 992
Bse118I RCCGGY 2 cut(s) 242, 850
Bse1I ACTGG 2 cut(s) 187, 728
Bse3DI GCAATG 2 cut(s) 31, 786
BseBI CCWGG 3 cut(s) 603, 630, 756
BseDI CCNNGG 2 cut(s) 314, 755
BseGI GGATG 3 cut(s) 264, 958, 1007
BseLI CCNNNNNNNGG 4 cut(s) 421, 742, 914, 992
BseMI GCAATG 2 cut(s) 31, 786
BseMII CTCAG 1 cut(s) 312
BseNI ACTGG 2 cut(s) 187, 728
BseSI GKGCMC 1 cut(s) 51
BseXI GCAGC 4 cut(s) 621, 710, 788, 988
BshFI GGCC 1 cut(s) 261
BshTI ACCGGT 1 cut(s) 850
BsiHKAI GWGCWC 1 cut(s) 535
BsiSI CCGG 3 cut(s) 243, 348, 851
BslFI GGGAC 1 cut(s) 772
BslI CCNNNNNNNGG 4 cut(s) 421, 742, 914, 992
BsmAI GTCTC 3 cut(s) 198, 304, 897
BsmFI GGGAC 1 cut(s) 772
BsmI GAATGC 1 cut(s) 756
BsnI GGCC 1 cut(s) 261
Bso31I GGTCTC 2 cut(s) 198, 304
Bsp1286I GDGCHC 2 cut(s) 51, 535
Bsp143I GATC 1 cut(s) 939
BspACI CCGC 2 cut(s) 36, 288
BspANI GGCC 1 cut(s) 261
BspCNI CTCAG 1 cut(s) 313
BspLI GGNNCC 1 cut(s) 997
BspMAI CTGCAG 1 cut(s) 700
BspQI GCTCTTC 1 cut(s) 321
BspTI CTTAAG 1 cut(s) 815
BspTNI GGTCTC 2 cut(s) 198, 304
BsrDI GCAATG 2 cut(s) 31, 786
BsrFI RCCGGY 2 cut(s) 242, 850
BsrI ACTGG 2 cut(s) 187, 728
BssAI RCCGGY 2 cut(s) 242, 850
BssECI CCNNGG 2 cut(s) 314, 755
BssMI GATC 1 cut(s) 939
BssT1I CCWWGG 1 cut(s) 314
Bst2UI CCWGG 3 cut(s) 603, 630, 756
Bst4CI ACNGT 1 cut(s) 763
Bst6I CTCTTC 3 cut(s) 158, 321, 1018
BstAFI CTTAAG 1 cut(s) 815
BstAPI GCANNNNNTGC 1 cut(s) 434
BstC8I GCNNGC 3 cut(s) 244, 459, 696
BstDEI CTNAG 3 cut(s) 321, 452, 945
BstF5I GGATG 3 cut(s) 264, 958, 1007
BstKTI GATC 1 cut(s) 942
BstMAI GTCTC 3 cut(s) 198, 304, 897
BstMBI GATC 1 cut(s) 939
BstMWI GCNNNNNNNGC 4 cut(s) 239, 434, 569, 669
BstNI CCWGG 3 cut(s) 603, 630, 756
BstNSI RCATGY 1 cut(s) 846
BstSCI CCNGG 3 cut(s) 601, 628, 754
BstSFI CTRYAG 1 cut(s) 696
BstSLI GKGCMC 1 cut(s) 51
BstV1I GCAGC 4 cut(s) 621, 710, 788, 988
BstXI CCANNNNNNTGG 1 cut(s) 194
BsuRI GGCC 1 cut(s) 261
BtsCI GGATG 3 cut(s) 264, 958, 1007
BtsI GCAGTG 1 cut(s) 715
BtsIMutI CAGTG 1 cut(s) 715
Cac8I GCNNGC 3 cut(s) 244, 459, 696
CaiI CAGNNNCTG 1 cut(s) 640
Cfr10I RCCGGY 2 cut(s) 242, 850
Cfr13I GGNCC 1 cut(s) 637
CseI GACGC 1 cut(s) 829
CsiI ACCWGGT 1 cut(s) 601
Csp6I GTAC 2 cut(s) 445, 764
CspAI ACCGGT 1 cut(s) 850
CviAII CATG 6 cut(s) 175, 293, 434, 625, 742, 843
CviQI GTAC 2 cut(s) 445, 764
DdeI CTNAG 3 cut(s) 321, 452, 945
DpnI GATC 1 cut(s) 941
DpnII GATC 1 cut(s) 939
Eam1104I CTCTTC 3 cut(s) 158, 321, 1018
EarI CTCTTC 3 cut(s) 158, 321, 1018
Eco130I CCWWGG 1 cut(s) 314
Eco31I GGTCTC 2 cut(s) 198, 304
Eco47I GGWCC 1 cut(s) 637
EcoO109I RGGNCCY 1 cut(s) 637
EcoRII CCWGG 3 cut(s) 601, 628, 754
EcoT14I CCWWGG 1 cut(s) 314
ErhI CCWWGG 1 cut(s) 314
FaeI CATG 6 cut(s) 178, 296, 437, 628, 745, 846
FaqI GGGAC 1 cut(s) 772
FatI CATG 6 cut(s) 174, 292, 433, 624, 741, 842
Fnu4HI GCNGC 5 cut(s) 288, 610, 699, 777, 977
FokI GGATG 3 cut(s) 251, 965, 994
Fsp4HI GCNGC 5 cut(s) 288, 610, 699, 777, 977
FspBI CTAG 3 cut(s) 57, 344, 408
GluI GCNGC 5 cut(s) 288, 610, 699, 777, 977
GsuI CTGGAG 2 cut(s) 170, 711
HaeIII GGCC 1 cut(s) 261
HapII CCGG 3 cut(s) 243, 348, 851
HgaI GACGC 1 cut(s) 829
Hin1II CATG 6 cut(s) 178, 296, 437, 628, 745, 846
HindIII AAGCTT 3 cut(s) 116, 359, 576
HinfI GANTC 5 cut(s) 11, 152, 542, 874, 1032
HpaII CCGG 3 cut(s) 243, 348, 851
HphI GGTGA 6 cut(s) 16, 139, 546, 591, 854, 876
Hpy166II GTNNAC 3 cut(s) 130, 479, 848
Hpy188I TCNGA 4 cut(s) 230, 256, 523, 1031
Hpy188III TCNNGA 2 cut(s) 539, 640
Hpy8I GTNNAC 3 cut(s) 130, 479, 848
Hpy99I CGWCG 2 cut(s) 913, 940
HpyAV CCTTC 1 cut(s) 943
HpyCH4III ACNGT 1 cut(s) 763
HpyCH4V TGCA 8 cut(s) 66, 389, 428, 437, 505, 698, 708, 784
HpyF10VI GCNNNNNNNGC 4 cut(s) 239, 434, 569, 669
HpyF3I CTNAG 3 cut(s) 321, 452, 945
Hsp92II CATG 6 cut(s) 178, 296, 437, 628, 745, 846
KroI GCCGGC 1 cut(s) 242
KroNI GCCGGC 1 cut(s) 244
Kzo9I GATC 1 cut(s) 939
LguI GCTCTTC 1 cut(s) 321
LmnI GCTCC 3 cut(s) 230, 730, 995
Lsp1109I GCAGC 4 cut(s) 621, 710, 788, 988
LweI GCATC 3 cut(s) 229, 710, 943
MabI ACCWGGT 1 cut(s) 601
MaeI CTAG 3 cut(s) 57, 344, 408
MaeIII GTNAC 3 cut(s) 38, 400, 1033
MalI GATC 1 cut(s) 941
MboI GATC 1 cut(s) 939
MhlI GDGCHC 2 cut(s) 51, 535
MluCI AATT 5 cut(s) 52, 394, 718, 969, 1000
MlyI GAGTC 1 cut(s) 1041
MmeI TCCRAC 2 cut(s) 208, 821
MnlI CCTC 5 cut(s) 260, 272, 316, 374, 1021
MroNI GCCGGC 1 cut(s) 242
MroXI GAANNNNTTC 2 cut(s) 25, 167
MseI TTAA 3 cut(s) 83, 816, 966
MslI CAYNNNNRTG 2 cut(s) 22, 658
MspCI CTTAAG 1 cut(s) 815
MspI CCGG 3 cut(s) 243, 348, 851
MspR9I CCNGG 3 cut(s) 603, 630, 756
Mva1269I GAATGC 1 cut(s) 756
MvaI CCWGG 3 cut(s) 603, 630, 756
MwoI GCNNNNNNNGC 4 cut(s) 239, 434, 569, 669
NaeI GCCGGC 1 cut(s) 244
NdeII GATC 1 cut(s) 939
NgoMIV GCCGGC 1 cut(s) 242
NlaIII CATG 6 cut(s) 178, 296, 437, 628, 745, 846
NlaIV GGNNCC 1 cut(s) 997
NmuCI GTSAC 3 cut(s) 38, 400, 1033
NspI RCATGY 1 cut(s) 846
OliI CACNNNNGTG 1 cut(s) 22
PciI ACATGT 1 cut(s) 842
PciSI GCTCTTC 1 cut(s) 321
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PctI GAATGC 1 cut(s) 756
PdiI GCCGGC 1 cut(s) 244
PdmI GAANNNNTTC 2 cut(s) 25, 167
PfeI GAWTC 4 cut(s) 11, 152, 542, 874
PinAI ACCGGT 1 cut(s) 850
PkrI GCNGC 5 cut(s) 289, 611, 700, 778, 978
PleI GAGTC 1 cut(s) 1040
PpsI GAGTC 1 cut(s) 1040
PpuMI RGGWCCY 1 cut(s) 637
PscI ACATGT 1 cut(s) 842
Psp5II RGGWCCY 1 cut(s) 637
Psp6I CCWGG 3 cut(s) 601, 628, 754
PspGI CCWGG 3 cut(s) 601, 628, 754
PspN4I GGNNCC 1 cut(s) 997
PspPI GGNCC 1 cut(s) 637
PspPPI RGGWCCY 1 cut(s) 637
PstI CTGCAG 1 cut(s) 700
PstNI CAGNNNCTG 1 cut(s) 640
RsaI GTAC 2 cut(s) 446, 765
RsaNI GTAC 2 cut(s) 445, 764
RseI CAYNNNNRTG 2 cut(s) 22, 658
SapI GCTCTTC 1 cut(s) 321
SaqAI TTAA 3 cut(s) 83, 816, 966
SatI GCNGC 5 cut(s) 288, 610, 699, 777, 977
Sau3AI GATC 1 cut(s) 939
Sau96I GGNCC 1 cut(s) 637
ScaI AGTACT 1 cut(s) 446
SchI GAGTC 1 cut(s) 1041
ScrFI CCNGG 3 cut(s) 603, 630, 756
SduI GDGCHC 2 cut(s) 51, 535
SexAI ACCWGGT 1 cut(s) 601
SfaNI GCATC 3 cut(s) 229, 710, 943
SfcI CTRYAG 1 cut(s) 696
SinI GGWCC 1 cut(s) 637
SmiMI CAYNNNNRTG 2 cut(s) 22, 658
SmlI CTYRAG 2 cut(s) 815, 990
SmoI CTYRAG 2 cut(s) 815, 990
Sse9I AATT 5 cut(s) 52, 394, 718, 969, 1000
SsiI CCGC 2 cut(s) 36, 288
SspMI CTAG 3 cut(s) 57, 344, 408
StyD4I CCNGG 3 cut(s) 601, 628, 754
StyI CCWWGG 1 cut(s) 314
TaaI ACNGT 1 cut(s) 763
TaqI TCGA 2 cut(s) 911, 938
TasI AATT 5 cut(s) 52, 394, 718, 969, 1000
TatI WGTACW 1 cut(s) 444
TauI GCSGC 1 cut(s) 290
TfiI GAWTC 4 cut(s) 11, 152, 542, 874
Tru1I TTAA 3 cut(s) 83, 816, 966
Tru9I TTAA 3 cut(s) 83, 816, 966
TscAI CASTG 1 cut(s) 715
TseFI GTSAC 3 cut(s) 38, 400, 1033
TseI GCWGC 4 cut(s) 609, 698, 776, 976
Tsp45I GTSAC 3 cut(s) 38, 400, 1033
TspDTI ATGAA 4 cut(s) 173, 309, 585, 911
TspGWI ACGGA 2 cut(s) 216, 897
TspRI CASTG 1 cut(s) 715
Vha464I CTTAAG 1 cut(s) 815
VpaK11BI GGWCC 1 cut(s) 637
XapI RAATTY 1 cut(s) 394
XceI RCATGY 1 cut(s) 846
XmnI GAANNNNTTC 2 cut(s) 25, 167
XspI CTAG 3 cut(s) 57, 344, 408
ZrmI AGTACT 1 cut(s) 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.