Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0014293

Physical Location & Seq

Genomic Coordinates Reverse (-)

27526361 .. 27528779

Gene Structure 2419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G271900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGTGAAGGAATCAATGAGAAAGTGTTCGCATTGCGGGCACAACGGGCATAACTCTAGGACGTGCAACAACAATGGCCATGGCCATGGGCAAAATAAAGGGGTTTGCTTGAAGCTTTTTGGCGTAAACATTATGGAGAAAGAAGATGATTCGATGAAGAAGAGTTACAGCATGGGCAATCTGCAGGCGGCAGGCAATGCAGACCACAACAACAACGTTGTTACAATTGATCACGATGCCGGCTATCTCTCCGACGGCCTCATTCACAACAAGAAACACAAAGCCGCCCATGAGAGAAAAAAAGGGAGGCCGTGGACCGAGGAAGAGCACCGGGTGTTTCTAGCTGGTTTGAAGAAGCTTGGGAAAGGAGATTGGAGAGGAATAGCAAGAAATTTTGTCACCACCAGAACCCCAACTCAGGTTGCTAGTCATGCACAAAAATATTTCCTCAGGCAAGCTACATATGATAAGAGAAAACGCAGATCAAGCCTCTTTGACATGCAATTTAAAGAACTCTCTATGGACCTGCAGGATCAGGGTCATCAAGATTCTCCAATTTCACCAACAAGAACAGCTACAGAAACTTCATCAGAGGGTAGCAGCTCTAAAGTTCTGCCACAGAAGATTAATACAGCTAATAGCTCACCACCTAAGGCAAGCGTTCCGTCTCAGATTCTAAACCGATTTCCACATCTATGTTTGGATAGCCCCCCAGCTGCTCCGGTGTCTCCACCTTGTAATGTTCCAAATTACCCTGCCGTCTCATACATGATGGGAATTCCTGAAAATGTCCCATACACCCCAATGATGCACTTTGCCAGACCAAGCTACCACTATATGATCAAAACACATGGTAACTTTGCTACTTGTGCACCTGTTATTTCTCACCCTTCTGGAATTCCATCACCAAGGTCTCTTCCAAGCAGTCCATCTATGGCCGGCCGTATCGGTATGAGCTCACCGGCTGAAAAAGATGCTCTAGAGCTTAAAATTGGGCAGCCTCAACCTTCTCAAGGAGCCAATTTGTCTTCCCCTACTTCTGGTGCCATCAGAGTGACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009743 GO:0009744 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0034285 GO:0042221 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

354

Amino Acids

38.64

Weight (kDa)

9.58

Isoelectric Point (pI)

62.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61620
fragaria_vesca	FvH4_7g26850
malus_domestica	MD01G1176700.v1.1 MD07G1247900.v1.1
prunus_persica	Prupe.2G271900_v2.0.a1 Prupe.2G271900_v2.0.a1
pyrus_communis	pycom01g18740
rosa_chinensis	RchiOBHm_Chr1g0373541
rosa_laevigata	RLG00000026817
rosa_roxburghii	Rroxscaffold_4G00284160
rosa_rugosa	Rorug01G0378000 Rorug01G0378000
rosa_samantha	Rh1AG387400 Rh1BG351800 Rh1CG364500 Rh1DG382200
rosa_wichuraiana	Rw1G034790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	534
AccB1I	GGYRCC	1 cut(s)	1043
AciI	CCGC	3 cut(s)	36, 188, 285
AclI	AACGTT	1 cut(s)	216
AclWI	GGATC	1 cut(s)	540
AcoI	YGGCCR	4 cut(s)	76, 82, 936, 940
AcsI	RAATTY	3 cut(s)	391, 777, 897
AdeI	CACNNNGTG	1 cut(s)	334
AfiI	CCNNNNNNNGG	3 cut(s)	418, 1013, 1040
AgsI	TTSAA	2 cut(s)	112, 352
AjiI	CACGTC	1 cut(s)	63
Alw21I	GWGCWC	3 cut(s)	330, 874, 959
Alw26I	GTCTC	4 cut(s)	672, 732, 766, 918
Alw44I	GTGCAC	1 cut(s)	870
AlwI	GGATC	1 cut(s)	540
AoxI	GGCC	6 cut(s)	76, 82, 256, 308, 936, 940
ApaLI	GTGCAC	1 cut(s)	870
ApeKI	GCWGC	3 cut(s)	600, 716, 997
ApoI	RAATTY	3 cut(s)	391, 777, 897
AseI	ATTAAT	1 cut(s)	627
Asp700I	GAANNNNTTC	1 cut(s)	25
AspS9I	GGNCC	2 cut(s)	315, 523
AsuC2I	CCSGG	1 cut(s)	332
AsuHPI	GGTGA	7 cut(s)	16, 391, 552, 636, 878, 897, 951
AvaII	GGWCC	2 cut(s)	315, 523
AxyI	CCTNAGG	2 cut(s)	449, 651
BaeGI	GKGCMC	2 cut(s)	42, 874
BalI	TGGCCA	2 cut(s)	78, 84
BanI	GGYRCC	1 cut(s)	1043
BanII	GRGCYC	1 cut(s)	959
BarI	GAAGNNNNNNTAC	2 cut(s)	149, 181
BbsI	GAAGAC	1 cut(s)	1020
Bbv12I	GWGCWC	3 cut(s)	330, 874, 959
BbvI	GCAGC	3 cut(s)	612, 703, 1009
BccI	CCATC	4 cut(s)	766, 910, 937, 1055
BceAI	ACGGC	4 cut(s)	271, 295, 743, 927
BclI	TGATCA	2 cut(s)	229, 840
BcnI	CCSGG	1 cut(s)	332
BcoDI	GTCTC	4 cut(s)	672, 732, 766, 918
BfaI	CTAG	4 cut(s)	57, 341, 426, 980
BfmI	CTRYAG	3 cut(s)	182, 527, 576
BfuAI	ACCTGC	1 cut(s)	534
BisI	GCNGC	5 cut(s)	189, 285, 601, 717, 998
BlsI	GCNGC	5 cut(s)	190, 286, 602, 718, 999
Bme1390I	CCNGG	1 cut(s)	332
Bme18I	GGWCC	2 cut(s)	315, 523
BmgBI	CACGTC	1 cut(s)	63
BmgT120I	GGNCC	2 cut(s)	315, 523
BmiI	GGNNCC	2 cut(s)	1018, 1045
BmrFI	CCNGG	1 cut(s)	332
BmsI	GCATC	3 cut(s)	226, 798, 964
BpiI	GAAGAC	1 cut(s)	1020
BpuEI	CTTGAG	1 cut(s)	996
BpuMI	CCSGG	1 cut(s)	332
BsaI	GGTCTC	1 cut(s)	918
BsaJI	CCNNGG	5 cut(s)	79, 85, 311, 318, 908
BsaWI	WCCGGW	1 cut(s)	721
Bsc4I	CCNNNNNNNGG	3 cut(s)	418, 1013, 1040
Bse118I	RCCGGY	3 cut(s)	239, 938, 961
Bse21I	CCTNAGG	2 cut(s)	449, 651
Bse3DI	GCAATG	2 cut(s)	31, 202
BseDI	CCNNGG	5 cut(s)	79, 85, 311, 318, 908
BseLI	CCNNNNNNNGG	3 cut(s)	418, 1013, 1040
BseMI	GCAATG	2 cut(s)	31, 202
BseMII	CTCAG	3 cut(s)	431, 463, 683
BseSI	GKGCMC	2 cut(s)	42, 874
BseX3I	CGGCCG	1 cut(s)	940
BseXI	GCAGC	3 cut(s)	612, 703, 1009
BseYI	CCCAGC	1 cut(s)	712
Bsh1285I	CGRYCG	1 cut(s)	943
BshFI	GGCC	6 cut(s)	78, 84, 258, 310, 938, 942
BshNI	GGYRCC	1 cut(s)	1043
BsiEI	CGRYCG	1 cut(s)	943
BsiHKAI	GWGCWC	3 cut(s)	330, 874, 959
BsiSI	CCGG	5 cut(s)	240, 331, 722, 939, 962
BslFI	GGGAC	1 cut(s)	776
BslI	CCNNNNNNNGG	3 cut(s)	418, 1013, 1040
BsmAI	GTCTC	4 cut(s)	672, 732, 766, 918
BsmBI	CGTCTC	2 cut(s)	672, 766
BsmFI	GGGAC	1 cut(s)	776
BsnI	GGCC	6 cut(s)	78, 84, 258, 310, 938, 942
Bso31I	GGTCTC	1 cut(s)	918
Bsp1286I	GDGCHC	4 cut(s)	42, 330, 874, 959
Bsp143I	GATC	4 cut(s)	229, 482, 532, 840
Bsp19I	CCATGG	2 cut(s)	79, 85
BspACI	CCGC	3 cut(s)	36, 188, 285
BspANI	GGCC	6 cut(s)	78, 84, 258, 310, 938, 942
BspCNI	CTCAG	3 cut(s)	430, 462, 682
BspLI	GGNNCC	2 cut(s)	1018, 1045
BspMAI	CTGCAG	2 cut(s)	186, 531
BspMI	ACCTGC	1 cut(s)	534
BspPI	GGATC	1 cut(s)	540
BspQI	GCTCTTC	1 cut(s)	318
BspT107I	GGYRCC	1 cut(s)	1043
BspTNI	GGTCTC	1 cut(s)	918
BsrDI	GCAATG	2 cut(s)	31, 202
BsrFI	RCCGGY	3 cut(s)	239, 938, 961
BssAI	RCCGGY	3 cut(s)	239, 938, 961
BssECI	CCNNGG	5 cut(s)	79, 85, 311, 318, 908
BssMI	GATC	4 cut(s)	229, 482, 532, 840
BssT1I	CCWWGG	3 cut(s)	79, 85, 908
Bst6I	CTCTTC	3 cut(s)	155, 318, 921
BstAPI	GCANNNNNTGC	1 cut(s)	197
BstC8I	GCNNGC	7 cut(s)	38, 186, 193, 241, 456, 658, 940
BstDEI	CTNAG	4 cut(s)	417, 449, 651, 669
BstDSI	CCRYGG	3 cut(s)	79, 85, 311
BstENI	CCTNNNNNAGG	1 cut(s)	1011
BstKTI	GATC	4 cut(s)	232, 485, 535, 843
BstMAI	GTCTC	4 cut(s)	672, 732, 766, 918
BstMBI	GATC	4 cut(s)	229, 482, 532, 840
BstMCI	CGRYCG	1 cut(s)	943
BstMWI	GCNNNNNNNGC	6 cut(s)	37, 46, 197, 431, 486, 869
BstNSI	RCATGY	1 cut(s)	502
BstSCI	CCNGG	1 cut(s)	330
BstSFI	CTRYAG	3 cut(s)	182, 527, 576
BstSLI	GKGCMC	2 cut(s)	42, 874
BstV1I	GCAGC	3 cut(s)	612, 703, 1009
BstV2I	GAAGAC	1 cut(s)	1020
BstXI	CCANNNNNNTGG	1 cut(s)	86
BstZI	CGGCCG	1 cut(s)	940
Bsu36I	CCTNAGG	2 cut(s)	449, 651
BsuRI	GGCC	6 cut(s)	78, 84, 258, 310, 938, 942
BtgI	CCRYGG	3 cut(s)	79, 85, 311
BtrI	CACGTC	1 cut(s)	63
BveI	ACCTGC	1 cut(s)	534
Cac8I	GCNNGC	7 cut(s)	38, 186, 193, 241, 456, 658, 940
Cfr10I	RCCGGY	3 cut(s)	239, 938, 961
Cfr13I	GGNCC	2 cut(s)	315, 523
CviAII	CATG	8 cut(s)	80, 86, 172, 290, 431, 499, 769, 851
DdeI	CTNAG	4 cut(s)	417, 449, 651, 669
DpnI	GATC	4 cut(s)	231, 484, 534, 842
DpnII	GATC	4 cut(s)	229, 482, 532, 840
DraI	TTTAAA	1 cut(s)	508
DraIII	CACNNNGTG	1 cut(s)	334
EaeI	YGGCCR	4 cut(s)	76, 82, 936, 940
EagI	CGGCCG	1 cut(s)	940
Eam1104I	CTCTTC	3 cut(s)	155, 318, 921
EarI	CTCTTC	3 cut(s)	155, 318, 921
Ecl136II	GAGCTC	1 cut(s)	957
EclXI	CGGCCG	1 cut(s)	940
Eco130I	CCWWGG	3 cut(s)	79, 85, 908
Eco24I	GRGCYC	1 cut(s)	959
Eco31I	GGTCTC	1 cut(s)	918
Eco47I	GGWCC	2 cut(s)	315, 523
Eco52I	CGGCCG	1 cut(s)	940
Eco53kI	GAGCTC	1 cut(s)	957
Eco81I	CCTNAGG	2 cut(s)	449, 651
EcoICRI	GAGCTC	1 cut(s)	957
EcoNI	CCTNNNNNAGG	1 cut(s)	1011
EcoRI	GAATTC	2 cut(s)	777, 897
EcoT14I	CCWWGG	3 cut(s)	79, 85, 908
EcoT38I	GRGCYC	1 cut(s)	959
ErhI	CCWWGG	3 cut(s)	79, 85, 908
Esp3I	CGTCTC	2 cut(s)	672, 766
FaeI	CATG	8 cut(s)	83, 89, 175, 293, 434, 502, 772, 854
FaqI	GGGAC	1 cut(s)	776
FatI	CATG	8 cut(s)	79, 85, 171, 289, 430, 498, 768, 850
FauI	CCCGC	1 cut(s)	29
FauNDI	CATATG	1 cut(s)	463
FbaI	TGATCA	2 cut(s)	229, 840
Fnu4HI	GCNGC	5 cut(s)	189, 285, 601, 717, 998
FriOI	GRGCYC	1 cut(s)	959
FseI	GGCCGGCC	1 cut(s)	942
Fsp4HI	GCNGC	5 cut(s)	189, 285, 601, 717, 998
FspBI	CTAG	4 cut(s)	57, 341, 426, 980
GluI	GCNGC	5 cut(s)	189, 285, 601, 717, 998
GsaI	CCCAGC	1 cut(s)	716
HaeIII	GGCC	6 cut(s)	78, 84, 258, 310, 938, 942
HapII	CCGG	5 cut(s)	240, 331, 722, 939, 962
Hin1II	CATG	8 cut(s)	83, 89, 175, 293, 434, 502, 772, 854
HindIII	AAGCTT	2 cut(s)	113, 356
HinfI	GANTC	4 cut(s)	11, 149, 548, 673
HpaII	CCGG	5 cut(s)	240, 331, 722, 939, 962
HphI	GGTGA	7 cut(s)	16, 391, 552, 636, 878, 897, 951
Hpy166II	GTNNAC	3 cut(s)	127, 315, 872
Hpy188I	TCNGA	4 cut(s)	253, 592, 672, 1052
Hpy188III	TCNNGA	5 cut(s)	233, 545, 782, 894, 980
Hpy8I	GTNNAC	3 cut(s)	127, 315, 872
Hpy99I	CGWCG	1 cut(s)	257
HpyAV	CCTTC	2 cut(s)	900, 1017
HpyCH4IV	ACGT	2 cut(s)	62, 216
HpyCH4V	TGCA	8 cut(s)	66, 184, 200, 434, 502, 529, 811, 872
HpyF10VI	GCNNNNNNNGC	6 cut(s)	37, 46, 197, 431, 486, 869
HpyF3I	CTNAG	4 cut(s)	417, 449, 651, 669
HpySE526I	ACGT	2 cut(s)	62, 216
Hsp92II	CATG	8 cut(s)	83, 89, 175, 293, 434, 502, 772, 854
KroI	GCCGGC	2 cut(s)	239, 938
KroNI	GCCGGC	2 cut(s)	241, 940
Ksp22I	TGATCA	2 cut(s)	229, 840
Kzo9I	GATC	4 cut(s)	229, 482, 532, 840
LguI	GCTCTTC	1 cut(s)	318
LmnI	GCTCC	2 cut(s)	724, 1016
Lsp1109I	GCAGC	3 cut(s)	612, 703, 1009
LweI	GCATC	3 cut(s)	226, 798, 964
MaeI	CTAG	4 cut(s)	57, 341, 426, 980
MaeII	ACGT	2 cut(s)	62, 216
MaeIII	GTNAC	5 cut(s)	164, 220, 397, 854, 1054
MalI	GATC	4 cut(s)	231, 484, 534, 842
MboI	GATC	4 cut(s)	229, 482, 532, 840
MboII	GAAGA	8 cut(s)	155, 169, 172, 335, 364, 634, 908, 1020
MfeI	CAATTG	1 cut(s)	225
MhlI	GDGCHC	4 cut(s)	42, 330, 874, 959
MlsI	TGGCCA	2 cut(s)	78, 84
MluCI	AATT	9 cut(s)	225, 391, 503, 555, 748, 777, 897, 990, 1021
MluNI	TGGCCA	2 cut(s)	78, 84
MmeI	TCCRAC	1 cut(s)	276
MnlI	CCTC	8 cut(s)	269, 300, 313, 371, 458, 500, 586, 1011
Mox20I	TGGCCA	2 cut(s)	78, 84
MroNI	GCCGGC	2 cut(s)	239, 938
MroXI	GAANNNNTTC	1 cut(s)	25
MscI	TGGCCA	2 cut(s)	78, 84
MseI	TTAA	3 cut(s)	507, 627, 987
MslI	CAYNNNNRTG	4 cut(s)	84, 694, 803, 1052
Msp20I	TGGCCA	2 cut(s)	78, 84
MspA1I	CMGCKG	1 cut(s)	716
MspI	CCGG	5 cut(s)	240, 331, 722, 939, 962
MspR9I	CCNGG	1 cut(s)	332
MunI	CAATTG	1 cut(s)	225
MwoI	GCNNNNNNNGC	6 cut(s)	37, 46, 197, 431, 486, 869
NaeI	GCCGGC	2 cut(s)	241, 940
NciI	CCSGG	1 cut(s)	332
NcoI	CCATGG	2 cut(s)	79, 85
NdeI	CATATG	1 cut(s)	463
NdeII	GATC	4 cut(s)	229, 482, 532, 840
NgoMIV	GCCGGC	2 cut(s)	239, 938
NlaIII	CATG	8 cut(s)	83, 89, 175, 293, 434, 502, 772, 854
NlaIV	GGNNCC	2 cut(s)	1018, 1045
NmuCI	GTSAC	2 cut(s)	397, 1054
NspI	RCATGY	1 cut(s)	502
PciSI	GCTCTTC	1 cut(s)	318
PdiI	GCCGGC	2 cut(s)	241, 940
PdmI	GAANNNNTTC	1 cut(s)	25
PfeI	GAWTC	4 cut(s)	11, 149, 548, 673
PkrI	GCNGC	5 cut(s)	190, 286, 602, 718, 999
PshBI	ATTAAT	1 cut(s)	627
Psp124BI	GAGCTC	1 cut(s)	959
Psp1406I	AACGTT	1 cut(s)	216
PspFI	CCCAGC	1 cut(s)	712
PspN4I	GGNNCC	2 cut(s)	1018, 1045
PspPI	GGNCC	2 cut(s)	315, 523
PstI	CTGCAG	2 cut(s)	186, 531
PvuII	CAGCTG	1 cut(s)	716
RigI	GGCCGGCC	1 cut(s)	942
RseI	CAYNNNNRTG	4 cut(s)	84, 694, 803, 1052
SacI	GAGCTC	1 cut(s)	959
SapI	GCTCTTC	1 cut(s)	318
SaqAI	TTAA	3 cut(s)	507, 627, 987
SatI	GCNGC	5 cut(s)	189, 285, 601, 717, 998
Sau3AI	GATC	4 cut(s)	229, 482, 532, 840
Sau96I	GGNCC	2 cut(s)	315, 523
SbfI	CCTGCAGG	1 cut(s)	531
ScrFI	CCNGG	1 cut(s)	332
SdaI	CCTGCAGG	1 cut(s)	531
SduI	GDGCHC	4 cut(s)	42, 330, 874, 959
SfaNI	GCATC	3 cut(s)	226, 798, 964
SfcI	CTRYAG	3 cut(s)	182, 527, 576
SinI	GGWCC	2 cut(s)	315, 523
SmiMI	CAYNNNNRTG	4 cut(s)	84, 694, 803, 1052
SmlI	CTYRAG	1 cut(s)	1011
SmoI	CTYRAG	1 cut(s)	1011
Sse8387I	CCTGCAGG	1 cut(s)	531
Sse9I	AATT	9 cut(s)	225, 391, 503, 555, 748, 777, 897, 990, 1021
SsiI	CCGC	3 cut(s)	36, 188, 285
SspI	AATATT	1 cut(s)	443
SspMI	CTAG	4 cut(s)	57, 341, 426, 980
SstI	GAGCTC	1 cut(s)	959
StyD4I	CCNGG	1 cut(s)	330
StyI	CCWWGG	3 cut(s)	79, 85, 908
TaiI	ACGT	2 cut(s)	65, 219
TaqI	TCGA	1 cut(s)	152
TaqII	GACCGA	1 cut(s)	332
TasI	AATT	9 cut(s)	225, 391, 503, 555, 748, 777, 897, 990, 1021
TauI	GCSGC	2 cut(s)	191, 287
TfiI	GAWTC	4 cut(s)	11, 149, 548, 673
Tru1I	TTAA	3 cut(s)	507, 627, 987
Tru9I	TTAA	3 cut(s)	507, 627, 987
TseFI	GTSAC	2 cut(s)	397, 1054
TseI	GCWGC	3 cut(s)	600, 716, 997
Tsp45I	GTSAC	2 cut(s)	397, 1054
TspDTI	ATGAA	2 cut(s)	170, 576
TspGWI	ACGGA	1 cut(s)	654
VneI	GTGCAC	1 cut(s)	870
VpaK11BI	GGWCC	2 cut(s)	315, 523
VspI	ATTAAT	1 cut(s)	627
XagI	CCTNNNNNAGG	1 cut(s)	1011
XapI	RAATTY	3 cut(s)	391, 777, 897
XbaI	TCTAGA	1 cut(s)	979
XceI	RCATGY	1 cut(s)	502
XmnI	GAANNNNTTC	1 cut(s)	25
XspI	CTAG	4 cut(s)	57, 341, 426, 980

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.