Rh1BG351800
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0014293
Physical Location & Seq
Reverse (-)
48429279 .. 48431181
1903 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG351800.1

Sequence Viewer

Length: 1077 bp
ATGGTGAAGGAATCGGCACGAAAGTGTTCGCATTGCGGTCACAACGGGCACAATTCTAGGACTTGCAACCACATAGGGCATGGGGTTAACAATAACAACAAGGGGGTTTGTTTGAAGCTTTTTGGGGTGAACATAATGGAAAGACAGGACGATTCTATGAAGAAGAGTTTCAGCATGGGAAATCTCCAGTCTGCCGGAAACGGAGACCAAAACAACAACATCAATGTCGGAGCTGACGATGCCGGCTACCTCTCCGACGGCCTCATCCATAACAAGAAACGCAAAGCCGCCCATGAAAGAAAAAAAGGGAGACCTTGGACTGAGGAAGAGCATAGAGTATTCCTAGCCGGATTGAAAAAGCTTGGGAAAGGCGATTGGAGAGGTATTGCAAGAAATTTTGTGACAACTAGAACCCCAACACAGGTTGCAAGTCATGCACAGAAGTACTTTCTTAGGCAGGCTACCAACGACAAGCGTAAACGAAGAACAAGTCTATTTGATTTGCACTTCAAAGAACTATCTGAACAATGTGCTCATCAAGATTCTCCACTCTCACCGACAGCCAAAACAGCCGAAGCTTCTTCTTCTTCTTCATCACCAGGTAGCAGCTCTAAAGTTCTGCCGCAAATCACTACAACTACGAACTCGCAACAGGCAAGCATGCCAGGTCAGGTCCTGAACCGATTTCCACATCTATGCTTGGATAGCCCCCCACCTGTTGCTCAAATGCCTGCAGCATCTTGCAGTGTTCCTAATTACGCTCCAGTTTTCCCATACATGGTAGGAATACCTGGGACTGTACCATATACAGCAGCAATGCACTATGGCAGTCCAACTTTCCACTACATGCTTAAGACGCAGGGTGGTAGTTTCGCTACATGTCCACCGGTGATTTCTCACCCATCAGGGATTCCATCATCACCGAAGTCTCTCCCAAGCAGTCCGTCGATGGGAGTTCATCGTAGGAACTCGTCGATCTCTAAGAAGGATGCCTTAGAGCTTAAAATTGGGCAGCCACAACCATCTCAAGGAGCCAATTTGTCATCCTCTTCTTCTGGGGCAATCAGAGTCACATAG

Protein Analysis

358

Amino Acids

38.64

Weight (kDa)

9.83

Isoelectric Point (pI)

65.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 105 - 150 1.3e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014293)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G61620
fragaria_vesca FvH4_7g26850
malus_domestica MD01G1176700.v1.1 MD07G1247900.v1.1
prunus_persica Prupe.2G271900_v2.0.a1 Prupe.2G271900_v2.0.a1
pyrus_communis pycom01g18740
rosa_chinensis RchiOBHm_Chr1g0373541
rosa_laevigata RLG00000026817
rosa_roxburghii Rroxscaffold_4G00284160
rosa_rugosa Rorug01G0378000 Rorug01G0378000
rosa_samantha Rh1AG387400 Rh1BG351800 Rh1CG364500 Rh1DG382200
rosa_wichuraiana Rw1G034790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 36, 288, 623
AcsI RAATTY 1 cut(s) 394
AfaI GTAC 2 cut(s) 446, 801
AfiI CCNNNNNNNGG 4 cut(s) 421, 778, 950, 1028
AflII CTTAAG 1 cut(s) 851
AflIII ACRYGT 1 cut(s) 878
AgeI ACCGGT 1 cut(s) 886
AgsI TTSAA 3 cut(s) 115, 355, 511
AjnI CCWGG 3 cut(s) 598, 664, 790
AleI CACNNNNGTG 1 cut(s) 22
AluBI AGCT 6 cut(s) 118, 233, 361, 578, 609, 1000
AluI AGCT 6 cut(s) 118, 233, 361, 578, 609, 1000
Alw21I GWGCWC 1 cut(s) 535
Alw26I GTCTC 3 cut(s) 198, 304, 933
AlwNI CAGNNNCTG 1 cut(s) 676
AoxI GGCC 1 cut(s) 259
ApeKI GCWGC 4 cut(s) 606, 734, 812, 1012
ApoI RAATTY 1 cut(s) 394
ArsI GACNNNNNNTTYG 2 cut(s) 475, 507
AsiGI ACCGGT 1 cut(s) 886
Asp700I GAANNNNTTC 2 cut(s) 25, 167
AspS9I GGNCC 1 cut(s) 673
AsuHPI GGTGA 7 cut(s) 16, 139, 546, 588, 890, 901, 912
AvaII GGWCC 1 cut(s) 673
BaeGI GKGCMC 1 cut(s) 51
Bbv12I GWGCWC 1 cut(s) 535
BbvI GCAGC 4 cut(s) 618, 746, 824, 1024
BccI CCATC 4 cut(s) 910, 922, 943, 1030
BceAI ACGGC 1 cut(s) 274
BciT130I CCWGG 3 cut(s) 600, 666, 792
BcoDI GTCTC 3 cut(s) 198, 304, 933
BfaI CTAG 3 cut(s) 57, 344, 408
BfmI CTRYAG 1 cut(s) 732
BfrI CTTAAG 1 cut(s) 851
BisI GCNGC 6 cut(s) 288, 607, 623, 735, 813, 1013
BlsI GCNGC 6 cut(s) 289, 608, 624, 736, 814, 1014
BmcAI AGTACT 1 cut(s) 446
Bme1390I CCNGG 3 cut(s) 600, 666, 792
Bme18I GGWCC 1 cut(s) 673
BmgT120I GGNCC 1 cut(s) 673
BmiI GGNNCC 1 cut(s) 1033
BmrFI CCNGG 3 cut(s) 600, 666, 792
BmsI GCATC 3 cut(s) 229, 746, 979
BpmI CTGGAG 2 cut(s) 170, 747
BpuEI CTTGAG 1 cut(s) 1011
BsaI GGTCTC 2 cut(s) 198, 304
BsaJI CCNNGG 2 cut(s) 314, 791
BsaWI WCCGGW 1 cut(s) 886
Bsc4I CCNNNNNNNGG 4 cut(s) 421, 778, 950, 1028
Bse118I RCCGGY 2 cut(s) 242, 886
Bse1I ACTGG 2 cut(s) 187, 764
Bse3DI GCAATG 2 cut(s) 31, 822
BseBI CCWGG 3 cut(s) 600, 666, 792
BseDI CCNNGG 2 cut(s) 314, 791
BseGI GGATG 3 cut(s) 264, 994, 1043
BseLI CCNNNNNNNGG 4 cut(s) 421, 778, 950, 1028
BseMI GCAATG 2 cut(s) 31, 822
BseMII CTCAG 1 cut(s) 312
BseNI ACTGG 2 cut(s) 187, 764
BseSI GKGCMC 1 cut(s) 51
BseXI GCAGC 4 cut(s) 618, 746, 824, 1024
BshFI GGCC 1 cut(s) 261
BshTI ACCGGT 1 cut(s) 886
BsiHKAI GWGCWC 1 cut(s) 535
BsiSI CCGG 4 cut(s) 195, 243, 348, 887
BslFI GGGAC 1 cut(s) 808
BslI CCNNNNNNNGG 4 cut(s) 421, 778, 950, 1028
BsmAI GTCTC 3 cut(s) 198, 304, 933
BsmFI GGGAC 1 cut(s) 808
BsnI GGCC 1 cut(s) 261
Bso31I GGTCTC 2 cut(s) 198, 304
Bsp1286I GDGCHC 2 cut(s) 51, 535
Bsp143I GATC 1 cut(s) 975
BspACI CCGC 3 cut(s) 36, 288, 623
BspANI GGCC 1 cut(s) 261
BspCNI CTCAG 1 cut(s) 313
BspLI GGNNCC 1 cut(s) 1033
BspMAI CTGCAG 1 cut(s) 736
BspQI GCTCTTC 1 cut(s) 321
BspTI CTTAAG 1 cut(s) 851
BspTNI GGTCTC 2 cut(s) 198, 304
BsrDI GCAATG 2 cut(s) 31, 822
BsrFI RCCGGY 2 cut(s) 242, 886
BsrI ACTGG 2 cut(s) 187, 764
BssAI RCCGGY 2 cut(s) 242, 886
BssECI CCNNGG 2 cut(s) 314, 791
BssMI GATC 1 cut(s) 975
BssT1I CCWWGG 1 cut(s) 314
Bst2UI CCWGG 3 cut(s) 600, 666, 792
Bst4CI ACNGT 1 cut(s) 799
Bst6I CTCTTC 3 cut(s) 158, 321, 1054
BstAFI CTTAAG 1 cut(s) 851
BstAPI GCANNNNNTGC 1 cut(s) 434
BstC8I GCNNGC 5 cut(s) 244, 459, 658, 662, 732
BstDEI CTNAG 4 cut(s) 321, 452, 981, 994
BstF5I GGATG 3 cut(s) 264, 994, 1043
BstKTI GATC 1 cut(s) 978
BstMAI GTCTC 3 cut(s) 198, 304, 933
BstMBI GATC 1 cut(s) 975
BstMWI GCNNNNNNNGC 5 cut(s) 239, 434, 569, 705, 856
BstNI CCWGG 3 cut(s) 600, 666, 792
BstNSI RCATGY 3 cut(s) 664, 850, 882
BstSCI CCNGG 3 cut(s) 598, 664, 790
BstSFI CTRYAG 1 cut(s) 732
BstSLI GKGCMC 1 cut(s) 51
BstV1I GCAGC 4 cut(s) 618, 746, 824, 1024
BsuRI GGCC 1 cut(s) 261
BtsCI GGATG 3 cut(s) 264, 994, 1043
BtsI GCAGTG 1 cut(s) 751
BtsIMutI CAGTG 1 cut(s) 751
Cac8I GCNNGC 5 cut(s) 244, 459, 658, 662, 732
CaiI CAGNNNCTG 1 cut(s) 676
Cfr10I RCCGGY 2 cut(s) 242, 886
Cfr13I GGNCC 1 cut(s) 673
CseI GACGC 1 cut(s) 865
CsiI ACCWGGT 1 cut(s) 598
Csp6I GTAC 2 cut(s) 445, 800
CspAI ACCGGT 1 cut(s) 886
CviAII CATG 8 cut(s) 80, 175, 293, 434, 661, 778, 847, 879
CviQI GTAC 2 cut(s) 445, 800
DdeI CTNAG 4 cut(s) 321, 452, 981, 994
DpnI GATC 1 cut(s) 977
DpnII GATC 1 cut(s) 975
Eam1104I CTCTTC 3 cut(s) 158, 321, 1054
EarI CTCTTC 3 cut(s) 158, 321, 1054
Eco130I CCWWGG 1 cut(s) 314
Eco31I GGTCTC 2 cut(s) 198, 304
Eco47I GGWCC 1 cut(s) 673
EcoO109I RGGNCCY 1 cut(s) 673
EcoRII CCWGG 3 cut(s) 598, 664, 790
EcoT14I CCWWGG 1 cut(s) 314
ErhI CCWWGG 1 cut(s) 314
FaeI CATG 8 cut(s) 83, 178, 296, 437, 664, 781, 850, 882
FalI AAGNNNNNCTT 2 cut(s) 977, 1009
FaqI GGGAC 1 cut(s) 808
FatI CATG 8 cut(s) 79, 174, 292, 433, 660, 777, 846, 878
Fnu4HI GCNGC 6 cut(s) 288, 607, 623, 735, 813, 1013
FokI GGATG 3 cut(s) 251, 1001, 1030
Fsp4HI GCNGC 6 cut(s) 288, 607, 623, 735, 813, 1013
FspBI CTAG 3 cut(s) 57, 344, 408
GluI GCNGC 6 cut(s) 288, 607, 623, 735, 813, 1013
GsuI CTGGAG 2 cut(s) 170, 747
HaeIII GGCC 1 cut(s) 261
HapII CCGG 4 cut(s) 195, 243, 348, 887
HgaI GACGC 1 cut(s) 865
Hin1II CATG 8 cut(s) 83, 178, 296, 437, 664, 781, 850, 882
HincII GTYRAC 1 cut(s) 88
HindII GTYRAC 1 cut(s) 88
HindIII AAGCTT 3 cut(s) 116, 359, 576
HinfI GANTC 5 cut(s) 11, 152, 542, 910, 1068
HpaI GTTAAC 1 cut(s) 88
HpaII CCGG 4 cut(s) 195, 243, 348, 887
HphI GGTGA 7 cut(s) 16, 139, 546, 588, 890, 901, 912
Hpy166II GTNNAC 4 cut(s) 88, 130, 479, 884
Hpy188I TCNGA 4 cut(s) 230, 256, 523, 1067
Hpy188III TCNNGA 2 cut(s) 539, 676
Hpy8I GTNNAC 4 cut(s) 88, 130, 479, 884
Hpy99I CGWCG 3 cut(s) 260, 949, 976
HpyAV CCTTC 1 cut(s) 979
HpyCH4III ACNGT 1 cut(s) 799
HpyCH4V TGCA 8 cut(s) 66, 389, 428, 437, 505, 734, 744, 820
HpyF10VI GCNNNNNNNGC 5 cut(s) 239, 434, 569, 705, 856
HpyF3I CTNAG 4 cut(s) 321, 452, 981, 994
Hsp92II CATG 8 cut(s) 83, 178, 296, 437, 664, 781, 850, 882
KroI GCCGGC 1 cut(s) 242
KroNI GCCGGC 1 cut(s) 244
KspAI GTTAAC 1 cut(s) 88
Kzo9I GATC 1 cut(s) 975
LguI GCTCTTC 1 cut(s) 321
LmnI GCTCC 3 cut(s) 230, 766, 1031
Lsp1109I GCAGC 4 cut(s) 618, 746, 824, 1024
LweI GCATC 3 cut(s) 229, 746, 979
MabI ACCWGGT 1 cut(s) 598
MaeI CTAG 3 cut(s) 57, 344, 408
MaeIII GTNAC 3 cut(s) 38, 400, 1069
MalI GATC 1 cut(s) 977
MboI GATC 1 cut(s) 975
MhlI GDGCHC 2 cut(s) 51, 535
MluCI AATT 5 cut(s) 52, 394, 754, 1005, 1036
MlyI GAGTC 1 cut(s) 1077
MmeI TCCRAC 3 cut(s) 208, 279, 857
MnlI CCTC 5 cut(s) 260, 272, 316, 374, 1057
MroNI GCCGGC 1 cut(s) 242
MroXI GAANNNNTTC 2 cut(s) 25, 167
MseI TTAA 3 cut(s) 87, 852, 1002
MslI CAYNNNNRTG 2 cut(s) 22, 694
MspCI CTTAAG 1 cut(s) 851
MspI CCGG 4 cut(s) 195, 243, 348, 887
MspR9I CCNGG 3 cut(s) 600, 666, 792
MvaI CCWGG 3 cut(s) 600, 666, 792
MwoI GCNNNNNNNGC 5 cut(s) 239, 434, 569, 705, 856
NaeI GCCGGC 1 cut(s) 244
NdeII GATC 1 cut(s) 975
NgoMIV GCCGGC 1 cut(s) 242
NlaIII CATG 8 cut(s) 83, 178, 296, 437, 664, 781, 850, 882
NlaIV GGNNCC 1 cut(s) 1033
NmuCI GTSAC 3 cut(s) 38, 400, 1069
NspI RCATGY 3 cut(s) 664, 850, 882
OliI CACNNNNGTG 1 cut(s) 22
PaeI GCATGC 1 cut(s) 664
PciI ACATGT 1 cut(s) 878
PciSI GCTCTTC 1 cut(s) 321
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PdiI GCCGGC 1 cut(s) 244
PdmI GAANNNNTTC 2 cut(s) 25, 167
PfeI GAWTC 4 cut(s) 11, 152, 542, 910
PinAI ACCGGT 1 cut(s) 886
PkrI GCNGC 6 cut(s) 289, 608, 624, 736, 814, 1014
PleI GAGTC 1 cut(s) 1076
PpsI GAGTC 1 cut(s) 1076
PpuMI RGGWCCY 1 cut(s) 673
PscI ACATGT 1 cut(s) 878
Psp5II RGGWCCY 1 cut(s) 673
Psp6I CCWGG 3 cut(s) 598, 664, 790
PspGI CCWGG 3 cut(s) 598, 664, 790
PspN4I GGNNCC 1 cut(s) 1033
PspPI GGNCC 1 cut(s) 673
PspPPI RGGWCCY 1 cut(s) 673
PstI CTGCAG 1 cut(s) 736
PstNI CAGNNNCTG 1 cut(s) 676
RsaI GTAC 2 cut(s) 446, 801
RsaNI GTAC 2 cut(s) 445, 800
RseI CAYNNNNRTG 2 cut(s) 22, 694
SapI GCTCTTC 1 cut(s) 321
SaqAI TTAA 3 cut(s) 87, 852, 1002
SatI GCNGC 6 cut(s) 288, 607, 623, 735, 813, 1013
Sau3AI GATC 1 cut(s) 975
Sau96I GGNCC 1 cut(s) 673
ScaI AGTACT 1 cut(s) 446
SchI GAGTC 1 cut(s) 1077
ScrFI CCNGG 3 cut(s) 600, 666, 792
SduI GDGCHC 2 cut(s) 51, 535
SexAI ACCWGGT 1 cut(s) 598
SfaNI GCATC 3 cut(s) 229, 746, 979
SfcI CTRYAG 1 cut(s) 732
SgrAI CRCCGGYG 1 cut(s) 886
SinI GGWCC 1 cut(s) 673
SmiMI CAYNNNNRTG 2 cut(s) 22, 694
SmlI CTYRAG 2 cut(s) 851, 1026
SmoI CTYRAG 2 cut(s) 851, 1026
SphI GCATGC 1 cut(s) 664
Sse9I AATT 5 cut(s) 52, 394, 754, 1005, 1036
SsiI CCGC 3 cut(s) 36, 288, 623
SspMI CTAG 3 cut(s) 57, 344, 408
StyD4I CCNGG 3 cut(s) 598, 664, 790
StyI CCWWGG 1 cut(s) 314
TaaI ACNGT 1 cut(s) 799
TaqI TCGA 2 cut(s) 947, 974
TasI AATT 5 cut(s) 52, 394, 754, 1005, 1036
TatI WGTACW 1 cut(s) 444
TauI GCSGC 2 cut(s) 290, 625
TfiI GAWTC 4 cut(s) 11, 152, 542, 910
Tru1I TTAA 3 cut(s) 87, 852, 1002
Tru9I TTAA 3 cut(s) 87, 852, 1002
TscAI CASTG 1 cut(s) 751
TseFI GTSAC 3 cut(s) 38, 400, 1069
TseI GCWGC 4 cut(s) 606, 734, 812, 1012
Tsp45I GTSAC 3 cut(s) 38, 400, 1069
TspDTI ATGAA 4 cut(s) 173, 309, 582, 947
TspGWI ACGGA 2 cut(s) 216, 933
TspRI CASTG 1 cut(s) 751
Vha464I CTTAAG 1 cut(s) 851
VpaK11BI GGWCC 1 cut(s) 673
XapI RAATTY 1 cut(s) 394
XceI RCATGY 3 cut(s) 664, 850, 882
XcmI CCANNNNNNNNNTGG 1 cut(s) 77
XmnI GAANNNNTTC 2 cut(s) 25, 167
XspI CTAG 3 cut(s) 57, 344, 408
ZrmI AGTACT 1 cut(s) 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.