Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0014293

Physical Location & Seq

Genomic Coordinates Reverse (-)

20185327 .. 20187466

Gene Structure 2140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g26850.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGTGAAGGAATCTGCAAGAAAGTGTTCGCATTGCGGTCACAACGGCCACAATTCTAGAACCTGCAACCTCTTAGGGCATGGGGTTAACAATAACAACAAGGGGATTTGTTTGAAGCTTTTTGGGGTGAACATAATGGAAAGACAAGAGGATTCTATAAAGAAGAGTTATAGCATGGGTAATCTTCAGGCTGCCGGAAACGGTGACCAAAACAACAATATCAATGTCGGAGCTGACGACGCTGGCTACCTCTCTGACGGTCTCATCCATAACAAGAAACGTAAAGCCGCCCATGAGAGGAAAAAAGGGAGACCATGGACTGAGGAAGAGCACAGAGTATTCCTAGCCGGATTGAAAAAGCTTGGAAAAGGTGATTGGAGAGGAATTGCAAGAAATTTTGTGACAACTAGAACCCCAACACAGGTTGCTAGTCATGCACAGAAGTACTTTCTCAGGCAGGCTACCAATGACAAGCGTAAACGAAGAACAAGTCTATTTGACATGCACTTCAAAGAACTATCTGAACAATATGCTCATCAAGATTCTCCCCTCTCACCGACAGCCAAAACTGCCGAAGCTTCTTCCTGTTCTTCTTCATCACCAGGAAGCACCTCTAAAGTTCTGCCACAGATCACAACAATTACGAACTCGCCTCAGGCAAACATGCCATCGCAGGTCCTGAACCGATTTCCGCATCTATGCTTGGATAGCCCCCCAGCTGTTGCTCAAATGCCTGCATCATCTTGCAGTGTTCCTACTTACGCCCCGGTTATCCCATACATGGTAGGAATGCCTGGGACTGTACCATATACACCAGCAATGCACTATGGCGGCCCAACTTTCCACTATATGCTTAAGACGCAGGGTGGTAATTTCTCTACATGTCAACCAGTTATTTCTCACCCCTCAGGGATTCCATCATCATCTAGATCTGTCCCAAGCAGTCCATTGATGGGAGTTCATCGTACAAACTCGTCGATCACTAAGAAGGATGCTTTAGAGCTTAAAATTGGGCAACCACAACCATCTCAGGGAGCCAATTTGTCATCCTCTTCTTCTGGGGCAATCAGAGTCACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009743 GO:0009744 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0034285 GO:0042221 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

360

Amino Acids

38.88

Weight (kDa)

9.76

Isoelectric Point (pI)

63.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	105 - 150	1.3e-11	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61620
fragaria_vesca	FvH4_7g26850
malus_domestica	MD01G1176700.v1.1 MD07G1247900.v1.1
prunus_persica	Prupe.2G271900_v2.0.a1 Prupe.2G271900_v2.0.a1
pyrus_communis	pycom01g18740
rosa_chinensis	RchiOBHm_Chr1g0373541
rosa_laevigata	RLG00000026817
rosa_roxburghii	Rroxscaffold_4G00284160
rosa_rugosa	Rorug01G0378000 Rorug01G0378000
rosa_samantha	Rh1AG387400 Rh1BG351800 Rh1CG364500 Rh1DG382200
rosa_wichuraiana	Rw1G034790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	71, 664
AciI	CCGC	4 cut(s)	36, 288, 692, 831
AcoI	YGGCCR	1 cut(s)	46
AcsI	RAATTY	1 cut(s)	394
AcuI	CTGAAG	1 cut(s)	170
AfaI	GTAC	3 cut(s)	446, 804, 967
AfiI	CCNNNNNNNGG	5 cut(s)	297, 421, 781, 953, 1031
AflII	CTTAAG	1 cut(s)	854
AflIII	ACRYGT	1 cut(s)	881
AgsI	TTSAA	3 cut(s)	115, 355, 511
AjnI	CCWGG	2 cut(s)	601, 793
AjuI	GAANNNNNNNTTGG	2 cut(s)	358, 390
AluBI	AGCT	6 cut(s)	118, 233, 361, 578, 719, 1003
AluI	AGCT	6 cut(s)	118, 233, 361, 578, 719, 1003
Alw21I	GWGCWC	1 cut(s)	333
Alw26I	GTCTC	2 cut(s)	266, 304
AlwNI	CAGNNNCTG	1 cut(s)	679
AoxI	GGCC	2 cut(s)	46, 832
ApeKI	GCWGC	1 cut(s)	191
ApoI	RAATTY	1 cut(s)	394
ArsI	GACNNNNNNTTYG	2 cut(s)	475, 507
Asp700I	GAANNNNTTC	1 cut(s)	25
AspS9I	GGNCC	2 cut(s)	676, 833
AsuC2I	CCSGG	1 cut(s)	767
AsuHPI	GGTGA	7 cut(s)	16, 139, 215, 383, 546, 591, 893
AvaII	GGWCC	1 cut(s)	676
AxyI	CCTNAGG	2 cut(s)	654, 907
Bbv12I	GWGCWC	1 cut(s)	333
BbvI	GCAGC	1 cut(s)	178
BccI	CCATC	4 cut(s)	676, 925, 946, 1033
BceAI	ACGGC	1 cut(s)	61
BciT130I	CCWGG	2 cut(s)	603, 795
BcnI	CCSGG	1 cut(s)	767
BcoDI	GTCTC	2 cut(s)	266, 304
BfaI	CTAG	5 cut(s)	57, 344, 408, 429, 927
BfrI	CTTAAG	1 cut(s)	854
BfuAI	ACCTGC	2 cut(s)	71, 664
BglII	AGATCT	1 cut(s)	929
BisI	GCNGC	3 cut(s)	192, 288, 832
BlsI	GCNGC	3 cut(s)	193, 289, 833
BmcAI	AGTACT	1 cut(s)	446
Bme1390I	CCNGG	3 cut(s)	603, 767, 795
Bme18I	GGWCC	1 cut(s)	676
BmgT120I	GGNCC	2 cut(s)	676, 833
BmiI	GGNNCC	1 cut(s)	1036
BmrFI	CCNGG	3 cut(s)	603, 767, 795
BmsI	GCATC	3 cut(s)	703, 746, 982
BpuMI	CCSGG	1 cut(s)	767
BsaI	GGTCTC	2 cut(s)	266, 304
BsaJI	CCNNGG	3 cut(s)	314, 765, 794
Bsc4I	CCNNNNNNNGG	5 cut(s)	297, 421, 781, 953, 1031
Bse1I	ACTGG	1 cut(s)	890
Bse21I	CCTNAGG	2 cut(s)	654, 907
Bse3DI	GCAATG	2 cut(s)	31, 825
BseBI	CCWGG	2 cut(s)	603, 795
BseDI	CCNNGG	3 cut(s)	314, 765, 794
BseGI	GGATG	3 cut(s)	264, 997, 1046
BseLI	CCNNNNNNNGG	5 cut(s)	297, 421, 781, 953, 1031
BseMI	GCAATG	2 cut(s)	31, 825
BseMII	CTCAG	5 cut(s)	312, 466, 668, 921, 1043
BseNI	ACTGG	1 cut(s)	890
BseXI	GCAGC	1 cut(s)	178
BseYI	CCCAGC	1 cut(s)	715
BshFI	GGCC	2 cut(s)	48, 834
BsiHKAI	GWGCWC	1 cut(s)	333
BsiSI	CCGG	3 cut(s)	195, 348, 767
BslFI	GGGAC	2 cut(s)	811, 920
BslI	CCNNNNNNNGG	5 cut(s)	297, 421, 781, 953, 1031
BsmAI	GTCTC	2 cut(s)	266, 304
BsmFI	GGGAC	2 cut(s)	811, 920
BsmI	GAATGC	1 cut(s)	795
BsnI	GGCC	2 cut(s)	48, 834
Bso31I	GGTCTC	2 cut(s)	266, 304
Bsp1286I	GDGCHC	1 cut(s)	333
Bsp143I	GATC	3 cut(s)	630, 929, 978
Bsp19I	CCATGG	1 cut(s)	314
BspACI	CCGC	4 cut(s)	36, 288, 692, 831
BspANI	GGCC	2 cut(s)	48, 834
BspCNI	CTCAG	5 cut(s)	313, 465, 667, 920, 1042
BspLI	GGNNCC	1 cut(s)	1036
BspMI	ACCTGC	2 cut(s)	71, 664
BspQI	GCTCTTC	1 cut(s)	321
BspTI	CTTAAG	1 cut(s)	854
BspTNI	GGTCTC	2 cut(s)	266, 304
BsrDI	GCAATG	2 cut(s)	31, 825
BsrI	ACTGG	1 cut(s)	890
BssECI	CCNNGG	3 cut(s)	314, 765, 794
BssMI	GATC	3 cut(s)	630, 929, 978
BssT1I	CCWWGG	1 cut(s)	314
Bst2UI	CCWGG	2 cut(s)	603, 795
Bst4CI	ACNGT	3 cut(s)	203, 260, 802
Bst6I	CTCTTC	3 cut(s)	158, 321, 1057
BstAFI	CTTAAG	1 cut(s)	854
BstC8I	GCNNGC	3 cut(s)	244, 459, 735
BstDEI	CTNAG	7 cut(s)	73, 321, 452, 654, 907, 984, 1029
BstDSI	CCRYGG	1 cut(s)	314
BstEII	GGTNACC	1 cut(s)	203
BstF5I	GGATG	3 cut(s)	264, 997, 1046
BstKTI	GATC	3 cut(s)	633, 932, 981
BstMAI	GTCTC	2 cut(s)	266, 304
BstMBI	GATC	3 cut(s)	630, 929, 978
BstMWI	GCNNNNNNNGC	5 cut(s)	239, 434, 569, 708, 859
BstNI	CCWGG	2 cut(s)	603, 795
BstNSI	RCATGY	3 cut(s)	505, 667, 885
BstPI	GGTNACC	1 cut(s)	203
BstSCI	CCNGG	3 cut(s)	601, 765, 793
BstV1I	GCAGC	1 cut(s)	178
BstX2I	RGATCY	1 cut(s)	929
BstYI	RGATCY	1 cut(s)	929
Bsu36I	CCTNAGG	2 cut(s)	654, 907
BsuRI	GGCC	2 cut(s)	48, 834
BtgI	CCRYGG	1 cut(s)	314
BtgZI	GCGATG	1 cut(s)	654
BtsCI	GGATG	3 cut(s)	264, 997, 1046
BtsI	GCAGTG	1 cut(s)	754
BtsIMutI	CAGTG	1 cut(s)	754
BveI	ACCTGC	2 cut(s)	71, 664
Cac8I	GCNNGC	3 cut(s)	244, 459, 735
CaiI	CAGNNNCTG	1 cut(s)	679
Cfr13I	GGNCC	2 cut(s)	676, 833
CseI	GACGC	2 cut(s)	248, 868
Csp6I	GTAC	3 cut(s)	445, 803, 966
CviAII	CATG	9 cut(s)	80, 175, 293, 315, 434, 502, 664, 781, 882
CviQI	GTAC	3 cut(s)	445, 803, 966
DdeI	CTNAG	7 cut(s)	73, 321, 452, 654, 907, 984, 1029
DpnI	GATC	3 cut(s)	632, 931, 980
DpnII	GATC	3 cut(s)	630, 929, 978
EaeI	YGGCCR	1 cut(s)	46
Eam1104I	CTCTTC	3 cut(s)	158, 321, 1057
EarI	CTCTTC	3 cut(s)	158, 321, 1057
Eco130I	CCWWGG	1 cut(s)	314
Eco31I	GGTCTC	2 cut(s)	266, 304
Eco47I	GGWCC	1 cut(s)	676
Eco57I	CTGAAG	1 cut(s)	170
Eco81I	CCTNAGG	2 cut(s)	654, 907
Eco91I	GGTNACC	1 cut(s)	203
EcoO109I	RGGNCCY	1 cut(s)	676
EcoO65I	GGTNACC	1 cut(s)	203
EcoRII	CCWGG	2 cut(s)	601, 793
EcoT14I	CCWWGG	1 cut(s)	314
ErhI	CCWWGG	1 cut(s)	314
FaeI	CATG	9 cut(s)	83, 178, 296, 318, 437, 505, 667, 784, 885
FaqI	GGGAC	2 cut(s)	811, 920
FatI	CATG	9 cut(s)	79, 174, 292, 314, 433, 501, 663, 780, 881
Fnu4HI	GCNGC	3 cut(s)	192, 288, 832
FokI	GGATG	3 cut(s)	251, 1004, 1033
Fsp4HI	GCNGC	3 cut(s)	192, 288, 832
FspBI	CTAG	5 cut(s)	57, 344, 408, 429, 927
GluI	GCNGC	3 cut(s)	192, 288, 832
GsaI	CCCAGC	1 cut(s)	719
HaeIII	GGCC	2 cut(s)	48, 834
HapII	CCGG	3 cut(s)	195, 348, 767
HgaI	GACGC	2 cut(s)	248, 868
Hin1II	CATG	9 cut(s)	83, 178, 296, 318, 437, 505, 667, 784, 885
HincII	GTYRAC	2 cut(s)	88, 887
HindII	GTYRAC	2 cut(s)	88, 887
HindIII	AAGCTT	3 cut(s)	116, 359, 576
HinfI	GANTC	5 cut(s)	11, 152, 542, 913, 1071
HpaI	GTTAAC	1 cut(s)	88
HpaII	CCGG	3 cut(s)	195, 348, 767
HphI	GGTGA	7 cut(s)	16, 139, 215, 383, 546, 591, 893
Hpy166II	GTNNAC	4 cut(s)	88, 130, 479, 887
Hpy188I	TCNGA	4 cut(s)	230, 256, 523, 1070
Hpy188III	TCNNGA	4 cut(s)	57, 539, 679, 927
Hpy8I	GTNNAC	4 cut(s)	88, 130, 479, 887
Hpy99I	CGWCG	2 cut(s)	242, 979
HpyAV	CCTTC	1 cut(s)	982
HpyCH4III	ACNGT	3 cut(s)	203, 260, 802
HpyCH4IV	ACGT	1 cut(s)	280
HpyCH4V	TGCA	8 cut(s)	17, 66, 389, 437, 505, 737, 747, 823
HpyF10VI	GCNNNNNNNGC	5 cut(s)	239, 434, 569, 708, 859
HpyF3I	CTNAG	7 cut(s)	73, 321, 452, 654, 907, 984, 1029
HpySE526I	ACGT	1 cut(s)	280
Hsp92II	CATG	9 cut(s)	83, 178, 296, 318, 437, 505, 667, 784, 885
KspAI	GTTAAC	1 cut(s)	88
Kzo9I	GATC	3 cut(s)	630, 929, 978
LguI	GCTCTTC	1 cut(s)	321
LmnI	GCTCC	2 cut(s)	230, 1034
Lsp1109I	GCAGC	1 cut(s)	178
LweI	GCATC	3 cut(s)	703, 746, 982
MaeI	CTAG	5 cut(s)	57, 344, 408, 429, 927
MaeII	ACGT	1 cut(s)	280
MaeIII	GTNAC	4 cut(s)	38, 203, 400, 1072
MalI	GATC	3 cut(s)	632, 931, 980
MboI	GATC	3 cut(s)	630, 929, 978
MboII	GAAGA	9 cut(s)	175, 176, 338, 495, 573, 582, 585, 1044, 1047
MflI	RGATCY	1 cut(s)	929
MhlI	GDGCHC	1 cut(s)	333
MluCI	AATT	7 cut(s)	52, 384, 394, 639, 871, 1008, 1039
MlyI	GAGTC	1 cut(s)	1080
MmeI	TCCRAC	1 cut(s)	208
MroXI	GAANNNNTTC	1 cut(s)	25
MseI	TTAA	3 cut(s)	87, 855, 1005
MspA1I	CMGCKG	1 cut(s)	719
MspCI	CTTAAG	1 cut(s)	854
MspI	CCGG	3 cut(s)	195, 348, 767
MspR9I	CCNGG	3 cut(s)	603, 767, 795
Mva1269I	GAATGC	1 cut(s)	795
MvaI	CCWGG	2 cut(s)	603, 795
MwoI	GCNNNNNNNGC	5 cut(s)	239, 434, 569, 708, 859
NciI	CCSGG	1 cut(s)	767
NcoI	CCATGG	1 cut(s)	314
NdeII	GATC	3 cut(s)	630, 929, 978
NlaIII	CATG	9 cut(s)	83, 178, 296, 318, 437, 505, 667, 784, 885
NlaIV	GGNNCC	1 cut(s)	1036
NmuCI	GTSAC	4 cut(s)	38, 203, 400, 1072
NspI	RCATGY	3 cut(s)	505, 667, 885
PciI	ACATGT	1 cut(s)	881
PciSI	GCTCTTC	1 cut(s)	321
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PctI	GAATGC	1 cut(s)	795
PdmI	GAANNNNTTC	1 cut(s)	25
PfeI	GAWTC	4 cut(s)	11, 152, 542, 913
PkrI	GCNGC	3 cut(s)	193, 289, 833
PleI	GAGTC	1 cut(s)	1079
PpsI	GAGTC	1 cut(s)	1079
PpuMI	RGGWCCY	1 cut(s)	676
PscI	ACATGT	1 cut(s)	881
Psp5II	RGGWCCY	1 cut(s)	676
Psp6I	CCWGG	2 cut(s)	601, 793
PspEI	GGTNACC	1 cut(s)	203
PspFI	CCCAGC	1 cut(s)	715
PspGI	CCWGG	2 cut(s)	601, 793
PspN4I	GGNNCC	1 cut(s)	1036
PspPI	GGNCC	2 cut(s)	676, 833
PspPPI	RGGWCCY	1 cut(s)	676
PstNI	CAGNNNCTG	1 cut(s)	679
PsuI	RGATCY	1 cut(s)	929
PvuII	CAGCTG	1 cut(s)	719
RsaI	GTAC	3 cut(s)	446, 804, 967
RsaNI	GTAC	3 cut(s)	445, 803, 966
SapI	GCTCTTC	1 cut(s)	321
SaqAI	TTAA	3 cut(s)	87, 855, 1005
SatI	GCNGC	3 cut(s)	192, 288, 832
Sau3AI	GATC	3 cut(s)	630, 929, 978
Sau96I	GGNCC	2 cut(s)	676, 833
ScaI	AGTACT	1 cut(s)	446
SchI	GAGTC	1 cut(s)	1080
ScrFI	CCNGG	3 cut(s)	603, 767, 795
SduI	GDGCHC	1 cut(s)	333
SfaNI	GCATC	3 cut(s)	703, 746, 982
SinI	GGWCC	1 cut(s)	676
SmlI	CTYRAG	1 cut(s)	854
SmoI	CTYRAG	1 cut(s)	854
Sse9I	AATT	7 cut(s)	52, 384, 394, 639, 871, 1008, 1039
SsiI	CCGC	4 cut(s)	36, 288, 692, 831
SspMI	CTAG	5 cut(s)	57, 344, 408, 429, 927
StyD4I	CCNGG	3 cut(s)	601, 765, 793
StyI	CCWWGG	1 cut(s)	314
TaaI	ACNGT	3 cut(s)	203, 260, 802
TaiI	ACGT	1 cut(s)	283
TaqI	TCGA	1 cut(s)	977
TasI	AATT	7 cut(s)	52, 384, 394, 639, 871, 1008, 1039
TatI	WGTACW	1 cut(s)	444
TauI	GCSGC	2 cut(s)	290, 834
TfiI	GAWTC	4 cut(s)	11, 152, 542, 913
Tru1I	TTAA	3 cut(s)	87, 855, 1005
Tru9I	TTAA	3 cut(s)	87, 855, 1005
TscAI	CASTG	1 cut(s)	754
TseFI	GTSAC	4 cut(s)	38, 203, 400, 1072
TseI	GCWGC	1 cut(s)	191
Tsp45I	GTSAC	4 cut(s)	38, 203, 400, 1072
TspDTI	ATGAA	2 cut(s)	585, 950
TspRI	CASTG	1 cut(s)	754
Vha464I	CTTAAG	1 cut(s)	854
VpaK11BI	GGWCC	1 cut(s)	676
XapI	RAATTY	1 cut(s)	394
XbaI	TCTAGA	2 cut(s)	56, 926
XceI	RCATGY	3 cut(s)	505, 667, 885
XmnI	GAANNNNTTC	1 cut(s)	25
XspI	CTAG	5 cut(s)	57, 344, 408, 429, 927
ZrmI	AGTACT	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.