Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0014293

Physical Location & Seq

Genomic Coordinates Forward (+)

5850252 .. 5852028

Gene Structure 1777 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00284160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGAAAGACAGGACGATTCTATGAAGAAGAGTTTCAGCATGGGAAATCTCCAGTCTGCCGGAAACGGAGACCAAAACAACAACATCAATGTCGGAGCTGACGATGCCGGCTACCTCTCCGACGGCCTCATCCATAACAAGAAACGCAAAGCTGCCCATGAAAGAAAAAAAGGTTTATCACTATTGCATTTAAATGTGATATTCTCTGTGGTTATGGTTGATGGGAGACCTTGGACTGAGGAAGAGCATAGAGTATTCCTAGCCGGATTGAAAAAGCTTGGGAAAGGCGATTGGAGAGGTATTGCAAGAAATTTTGTGACAACTAGAACCCCAACACAGGTTGCAAGTCATGCACAGAAGTACTTTCTTAGGCAGGCTACCAACGACAAGCGTAAACGAAGAACAAGTCTATTTGATTTGCACTTCAAAGAACTATCTGAACAATGTGCTCATCAAGATTCTCCACTCTCACCGACACCGACAGCCAAAACAGCCGAAGCTTCTTCTTCTTCTTCTTCATCAATAGGTAGCAGCTCTAAAGTTCTGCCGCAAATCACCACAACTACGAACTCGCAACAGGCAAGCATGCCAGGGCAGGTCCTGAACCGATTTCCACATCTATGCTTGGATAGCCCCCCACCTGTTGCTCAAATGCCTGCAGCATCTTGCAGTGTTCCTAATTACGCTCCAGTTATCCCATACATGGTAGGAATGCCTGGGACTGTACCATATACAGCAGCAATGCACTATGGCAGTCCAACGTTCCACTACATGCTTAAGACGCAGGGTGGTAGTTTCGCTACATGTCCACCGGTTATTTCTCACCCATCAGGGATTCCATCATCACCGAAGTCTCTCCCAAGCAGTCCGTCAATGGGAGTTCATCGTAGGAACTCGTCAATCTCTAAGAAGGATGCTTTAGAGCTTAAAATTGGGCAGCCACAACCATCTCAAGGAGCCAATTTGTCATCCTCTTCTTCTGGGGCAATCAGAGTCACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009743 GO:0009744 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0034285 GO:0042221 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

333

Amino Acids

35.9

Weight (kDa)

9.78

Isoelectric Point (pI)

64.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	77 - 122	1.2e-11	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61620
fragaria_vesca	FvH4_7g26850
malus_domestica	MD01G1176700.v1.1 MD07G1247900.v1.1
prunus_persica	Prupe.2G271900_v2.0.a1 Prupe.2G271900_v2.0.a1
pyrus_communis	pycom01g18740
rosa_chinensis	RchiOBHm_Chr1g0373541
rosa_laevigata	RLG00000026817
rosa_roxburghii	Rroxscaffold_4G00284160
rosa_rugosa	Rorug01G0378000 Rorug01G0378000
rosa_samantha	Rh1AG387400 Rh1BG351800 Rh1CG364500 Rh1DG382200
rosa_wichuraiana	Rw1G034790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	586
AciI	CCGC	1 cut(s)	548
AclI	AACGTT	1 cut(s)	761
AcsI	RAATTY	1 cut(s)	310
AfaI	GTAC	2 cut(s)	362, 726
AfiI	CCNNNNNNNGG	4 cut(s)	337, 703, 875, 953
AflII	CTTAAG	1 cut(s)	776
AflIII	ACRYGT	1 cut(s)	803
AgeI	ACCGGT	1 cut(s)	811
AgsI	TTSAA	2 cut(s)	271, 427
AjnI	CCWGG	2 cut(s)	589, 715
AluBI	AGCT	6 cut(s)	98, 152, 277, 500, 534, 925
AluI	AGCT	6 cut(s)	98, 152, 277, 500, 534, 925
Alw21I	GWGCWC	1 cut(s)	451
Alw26I	GTCTC	3 cut(s)	63, 220, 858
AlwNI	CAGNNNCTG	1 cut(s)	601
AoxI	GGCC	1 cut(s)	124
ApeKI	GCWGC	5 cut(s)	152, 531, 659, 737, 937
ApoI	RAATTY	1 cut(s)	310
ArsI	GACNNNNNNTTYG	2 cut(s)	391, 423
AsiGI	ACCGGT	1 cut(s)	811
Asp700I	GAANNNNTTC	1 cut(s)	32
AspS9I	GGNCC	1 cut(s)	598
AsuHPI	GGTGA	4 cut(s)	462, 547, 815, 837
AvaII	GGWCC	1 cut(s)	598
Bbv12I	GWGCWC	1 cut(s)	451
BbvI	GCAGC	5 cut(s)	139, 543, 671, 749, 949
BccI	CCATC	4 cut(s)	215, 835, 847, 955
BceAI	ACGGC	1 cut(s)	139
BciT130I	CCWGG	2 cut(s)	591, 717
BcoDI	GTCTC	3 cut(s)	63, 220, 858
BfaI	CTAG	2 cut(s)	260, 324
BfmI	CTRYAG	1 cut(s)	657
BfrI	CTTAAG	1 cut(s)	776
BfuAI	ACCTGC	1 cut(s)	586
BisI	GCNGC	6 cut(s)	153, 532, 548, 660, 738, 938
BlsI	GCNGC	6 cut(s)	154, 533, 549, 661, 739, 939
BmcAI	AGTACT	1 cut(s)	362
Bme1390I	CCNGG	2 cut(s)	591, 717
Bme18I	GGWCC	1 cut(s)	598
BmgT120I	GGNCC	1 cut(s)	598
BmiI	GGNNCC	1 cut(s)	958
BmrFI	CCNGG	2 cut(s)	591, 717
BmsI	GCATC	3 cut(s)	94, 671, 904
BpmI	CTGGAG	2 cut(s)	35, 672
BpuEI	CTTGAG	1 cut(s)	936
BsaI	GGTCTC	2 cut(s)	63, 220
BsaJI	CCNNGG	3 cut(s)	230, 590, 716
BsaWI	WCCGGW	1 cut(s)	811
Bsc4I	CCNNNNNNNGG	4 cut(s)	337, 703, 875, 953
Bse118I	RCCGGY	2 cut(s)	107, 811
Bse1I	ACTGG	2 cut(s)	52, 689
Bse3DI	GCAATG	1 cut(s)	747
BseBI	CCWGG	2 cut(s)	591, 717
BseDI	CCNNGG	3 cut(s)	230, 590, 716
BseGI	GGATG	3 cut(s)	129, 919, 968
BseLI	CCNNNNNNNGG	4 cut(s)	337, 703, 875, 953
BseMI	GCAATG	1 cut(s)	747
BseMII	CTCAG	1 cut(s)	228
BseNI	ACTGG	2 cut(s)	52, 689
BseXI	GCAGC	5 cut(s)	139, 543, 671, 749, 949
BshFI	GGCC	1 cut(s)	126
BshTI	ACCGGT	1 cut(s)	811
BsiHKAI	GWGCWC	1 cut(s)	451
BsiSI	CCGG	4 cut(s)	60, 108, 264, 812
BslFI	GGGAC	1 cut(s)	733
BslI	CCNNNNNNNGG	4 cut(s)	337, 703, 875, 953
BsmAI	GTCTC	3 cut(s)	63, 220, 858
BsmFI	GGGAC	1 cut(s)	733
BsmI	GAATGC	1 cut(s)	717
BsnI	GGCC	1 cut(s)	126
Bso31I	GGTCTC	2 cut(s)	63, 220
Bsp1286I	GDGCHC	1 cut(s)	451
BspACI	CCGC	1 cut(s)	548
BspANI	GGCC	1 cut(s)	126
BspCNI	CTCAG	1 cut(s)	229
BspLI	GGNNCC	1 cut(s)	958
BspMAI	CTGCAG	1 cut(s)	661
BspMI	ACCTGC	1 cut(s)	586
BspQI	GCTCTTC	1 cut(s)	237
BspTI	CTTAAG	1 cut(s)	776
BspTNI	GGTCTC	2 cut(s)	63, 220
BsrDI	GCAATG	1 cut(s)	747
BsrFI	RCCGGY	2 cut(s)	107, 811
BsrI	ACTGG	2 cut(s)	52, 689
BssAI	RCCGGY	2 cut(s)	107, 811
BssECI	CCNNGG	3 cut(s)	230, 590, 716
BssT1I	CCWWGG	1 cut(s)	230
Bst2UI	CCWGG	2 cut(s)	591, 717
Bst4CI	ACNGT	1 cut(s)	724
Bst6I	CTCTTC	3 cut(s)	23, 237, 979
BstAFI	CTTAAG	1 cut(s)	776
BstAPI	GCANNNNNTGC	1 cut(s)	350
BstC8I	GCNNGC	5 cut(s)	109, 375, 583, 587, 657
BstDEI	CTNAG	3 cut(s)	237, 368, 906
BstF5I	GGATG	3 cut(s)	129, 919, 968
BstMAI	GTCTC	3 cut(s)	63, 220, 858
BstMWI	GCNNNNNNNGC	5 cut(s)	104, 350, 491, 630, 781
BstNI	CCWGG	2 cut(s)	591, 717
BstNSI	RCATGY	3 cut(s)	589, 775, 807
BstSCI	CCNGG	2 cut(s)	589, 715
BstSFI	CTRYAG	1 cut(s)	657
BstV1I	GCAGC	5 cut(s)	139, 543, 671, 749, 949
BsuRI	GGCC	1 cut(s)	126
BtsCI	GGATG	3 cut(s)	129, 919, 968
BtsI	GCAGTG	1 cut(s)	676
BtsIMutI	CAGTG	1 cut(s)	676
BveI	ACCTGC	1 cut(s)	586
Cac8I	GCNNGC	5 cut(s)	109, 375, 583, 587, 657
CaiI	CAGNNNCTG	1 cut(s)	601
Cfr10I	RCCGGY	2 cut(s)	107, 811
Cfr13I	GGNCC	1 cut(s)	598
CseI	GACGC	1 cut(s)	790
Csp6I	GTAC	2 cut(s)	361, 725
CspAI	ACCGGT	1 cut(s)	811
CviAII	CATG	7 cut(s)	40, 158, 350, 586, 703, 772, 804
CviQI	GTAC	2 cut(s)	361, 725
DdeI	CTNAG	3 cut(s)	237, 368, 906
DraI	TTTAAA	1 cut(s)	192
Eam1104I	CTCTTC	3 cut(s)	23, 237, 979
EarI	CTCTTC	3 cut(s)	23, 237, 979
Eco130I	CCWWGG	1 cut(s)	230
Eco31I	GGTCTC	2 cut(s)	63, 220
Eco47I	GGWCC	1 cut(s)	598
EcoO109I	RGGNCCY	1 cut(s)	598
EcoRII	CCWGG	2 cut(s)	589, 715
EcoT14I	CCWWGG	1 cut(s)	230
ErhI	CCWWGG	1 cut(s)	230
FaeI	CATG	7 cut(s)	43, 161, 353, 589, 706, 775, 807
FaqI	GGGAC	1 cut(s)	733
FatI	CATG	7 cut(s)	39, 157, 349, 585, 702, 771, 803
Fnu4HI	GCNGC	6 cut(s)	153, 532, 548, 660, 738, 938
FokI	GGATG	3 cut(s)	116, 926, 955
Fsp4HI	GCNGC	6 cut(s)	153, 532, 548, 660, 738, 938
FspBI	CTAG	2 cut(s)	260, 324
GluI	GCNGC	6 cut(s)	153, 532, 548, 660, 738, 938
GsuI	CTGGAG	2 cut(s)	35, 672
HaeIII	GGCC	1 cut(s)	126
HapII	CCGG	4 cut(s)	60, 108, 264, 812
HgaI	GACGC	1 cut(s)	790
Hin1II	CATG	7 cut(s)	43, 161, 353, 589, 706, 775, 807
HindIII	AAGCTT	2 cut(s)	275, 498
HinfI	GANTC	4 cut(s)	17, 458, 835, 993
HpaII	CCGG	4 cut(s)	60, 108, 264, 812
HphI	GGTGA	4 cut(s)	462, 547, 815, 837
Hpy166II	GTNNAC	2 cut(s)	395, 809
Hpy188I	TCNGA	4 cut(s)	95, 121, 439, 992
Hpy188III	TCNNGA	2 cut(s)	455, 601
Hpy8I	GTNNAC	2 cut(s)	395, 809
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	1 cut(s)	904
HpyCH4III	ACNGT	1 cut(s)	724
HpyCH4IV	ACGT	1 cut(s)	761
HpyCH4V	TGCA	8 cut(s)	187, 305, 344, 353, 421, 659, 669, 745
HpyF10VI	GCNNNNNNNGC	5 cut(s)	104, 350, 491, 630, 781
HpyF3I	CTNAG	3 cut(s)	237, 368, 906
HpySE526I	ACGT	1 cut(s)	761
Hsp92II	CATG	7 cut(s)	43, 161, 353, 589, 706, 775, 807
KroI	GCCGGC	1 cut(s)	107
KroNI	GCCGGC	1 cut(s)	109
LguI	GCTCTTC	1 cut(s)	237
LmnI	GCTCC	3 cut(s)	95, 691, 956
Lsp1109I	GCAGC	5 cut(s)	139, 543, 671, 749, 949
LweI	GCATC	3 cut(s)	94, 671, 904
MaeI	CTAG	2 cut(s)	260, 324
MaeII	ACGT	1 cut(s)	761
MaeIII	GTNAC	2 cut(s)	316, 994
MhlI	GDGCHC	1 cut(s)	451
MluCI	AATT	4 cut(s)	310, 679, 930, 961
MlyI	GAGTC	1 cut(s)	1002
MmeI	TCCRAC	3 cut(s)	73, 144, 782
MnlI	CCTC	5 cut(s)	125, 137, 232, 290, 982
MroNI	GCCGGC	1 cut(s)	107
MroXI	GAANNNNTTC	1 cut(s)	32
MseI	TTAA	3 cut(s)	191, 777, 927
MslI	CAYNNNNRTG	2 cut(s)	192, 619
MspCI	CTTAAG	1 cut(s)	776
MspI	CCGG	4 cut(s)	60, 108, 264, 812
MspR9I	CCNGG	2 cut(s)	591, 717
Mva1269I	GAATGC	1 cut(s)	717
MvaI	CCWGG	2 cut(s)	591, 717
MwoI	GCNNNNNNNGC	5 cut(s)	104, 350, 491, 630, 781
NaeI	GCCGGC	1 cut(s)	109
NgoMIV	GCCGGC	1 cut(s)	107
NlaIII	CATG	7 cut(s)	43, 161, 353, 589, 706, 775, 807
NlaIV	GGNNCC	1 cut(s)	958
NmuCI	GTSAC	2 cut(s)	316, 994
NspI	RCATGY	3 cut(s)	589, 775, 807
PaeI	GCATGC	1 cut(s)	589
PciI	ACATGT	1 cut(s)	803
PciSI	GCTCTTC	1 cut(s)	237
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PctI	GAATGC	1 cut(s)	717
PdiI	GCCGGC	1 cut(s)	109
PdmI	GAANNNNTTC	1 cut(s)	32
PfeI	GAWTC	3 cut(s)	17, 458, 835
PinAI	ACCGGT	1 cut(s)	811
PkrI	GCNGC	6 cut(s)	154, 533, 549, 661, 739, 939
PleI	GAGTC	1 cut(s)	1001
PpsI	GAGTC	1 cut(s)	1001
PpuMI	RGGWCCY	1 cut(s)	598
PscI	ACATGT	1 cut(s)	803
Psp1406I	AACGTT	1 cut(s)	761
Psp5II	RGGWCCY	1 cut(s)	598
Psp6I	CCWGG	2 cut(s)	589, 715
PspGI	CCWGG	2 cut(s)	589, 715
PspN4I	GGNNCC	1 cut(s)	958
PspPI	GGNCC	1 cut(s)	598
PspPPI	RGGWCCY	1 cut(s)	598
PstI	CTGCAG	1 cut(s)	661
PstNI	CAGNNNCTG	1 cut(s)	601
RsaI	GTAC	2 cut(s)	362, 726
RsaNI	GTAC	2 cut(s)	361, 725
RseI	CAYNNNNRTG	2 cut(s)	192, 619
SapI	GCTCTTC	1 cut(s)	237
SaqAI	TTAA	3 cut(s)	191, 777, 927
SatI	GCNGC	6 cut(s)	153, 532, 548, 660, 738, 938
Sau96I	GGNCC	1 cut(s)	598
ScaI	AGTACT	1 cut(s)	362
SchI	GAGTC	1 cut(s)	1002
ScrFI	CCNGG	2 cut(s)	591, 717
SduI	GDGCHC	1 cut(s)	451
SfaNI	GCATC	3 cut(s)	94, 671, 904
SfcI	CTRYAG	1 cut(s)	657
SinI	GGWCC	1 cut(s)	598
SmiI	ATTTAAAT	1 cut(s)	192
SmiMI	CAYNNNNRTG	2 cut(s)	192, 619
SmlI	CTYRAG	2 cut(s)	776, 951
SmoI	CTYRAG	2 cut(s)	776, 951
SphI	GCATGC	1 cut(s)	589
Sse9I	AATT	4 cut(s)	310, 679, 930, 961
SsiI	CCGC	1 cut(s)	548
SspMI	CTAG	2 cut(s)	260, 324
StyD4I	CCNGG	2 cut(s)	589, 715
StyI	CCWWGG	1 cut(s)	230
SwaI	ATTTAAAT	1 cut(s)	192
TaaI	ACNGT	1 cut(s)	724
TaiI	ACGT	1 cut(s)	764
TasI	AATT	4 cut(s)	310, 679, 930, 961
TatI	WGTACW	1 cut(s)	360
TauI	GCSGC	1 cut(s)	550
TfiI	GAWTC	3 cut(s)	17, 458, 835
Tru1I	TTAA	3 cut(s)	191, 777, 927
Tru9I	TTAA	3 cut(s)	191, 777, 927
TscAI	CASTG	1 cut(s)	676
TseFI	GTSAC	2 cut(s)	316, 994
TseI	GCWGC	5 cut(s)	152, 531, 659, 737, 937
Tsp45I	GTSAC	2 cut(s)	316, 994
TspDTI	ATGAA	4 cut(s)	38, 174, 507, 872
TspGWI	ACGGA	2 cut(s)	81, 858
TspRI	CASTG	1 cut(s)	676
Vha464I	CTTAAG	1 cut(s)	776
VpaK11BI	GGWCC	1 cut(s)	598
XapI	RAATTY	1 cut(s)	310
XceI	RCATGY	3 cut(s)	589, 775, 807
XmnI	GAANNNNTTC	1 cut(s)	32
XspI	CTAG	2 cut(s)	260, 324
ZrmI	AGTACT	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.