Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0014293

Physical Location & Seq

Genomic Coordinates Reverse (-)

17587643 .. 17589737

Gene Structure 2095 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g18740.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGTGAAGGAATCGGCACGAAAGTGTTCGCATTGTGGTCACAATGGCCACAACTCGAGGACGTGCAACCACAGCCATGTAAATAAAGGGTTTTGCTTGAAGCTTTTCGGCGTGAACATTTTGGAAAACCAGGAGGATTCTATGAAGAAGAGTTACAGCATGGGGAATCTGCATACAGACGGCAACGGAGACCACAACAACAACGCTATTGGGGCTGATCACGATGCTGGCTACCTCTCCGATGGCCTCATTCATAACAAGAGACACAAGGCCGCCCATGAGAGAAAAAAAGGGAGGCCATGGACTGAGGAAGAGCATAGAGTATTTCTAGCTGGTTTGAAGAAGCTTGGGAAAGGTGATTGGAGAGGAATAGCAAGAAACTTTGTGACCACAAGAACCCCAACCCAGGTTGCTAGTCATGCACAGAAGTATTTCCTCAGGCAAGCTACAAATGATAAGAGGAAACGCAGATCAAGCCTCTTTGACATGCACCTTAAAGAACTCTATGATCAGGGTCCTCAAGATTCCTCAGTTACACCTACAAAGTCAGCTGCTGAAACTTCACCACAGGCTAGCAGCTCTAAAACTAGGCAACTGAAAATCAATACAGGCAATAACTCGCCACCGGCTAGCAACGTTCCAACTCAGATTCTTGACAGATTCCCACATCTGTGCTTGGATAGCCCCCCAGCTCCTCCATTGTCTCCAATTTGCACTCTTCCAAATTACCCTGCCATGCCATTTATGATGGGAATTCCAGGAAATGTCTCATACGCCCCAATGATGCACTTTTACAGACCAAGTTACCACCACATGATCAAAAACCATGGTAACTCTCCAACTAGTGCACCTGTCATTTCTCACCCTTCTGGAATCCCATCATCACCAAGGTCCCTCCCAAGCGGTCCATCCATGGCAGCCGGCCGGATCAGCAGCATGACGTCAGCAGCTGAGAAAGATGCTTTAGAGCTTAAAATTGGGCAGCCTCAGCCCTCTCAGGGAGCAAACTTGTCTCCTTCTTCTTCTTCTGGTGCCATCAGAGTCACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009743 GO:0009744 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0034285 GO:0042221 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

350

Amino Acids

38.06

Weight (kDa)

9.73

Isoelectric Point (pI)

60.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61620
fragaria_vesca	FvH4_7g26850
malus_domestica	MD01G1176700.v1.1 MD07G1247900.v1.1
prunus_persica	Prupe.2G271900_v2.0.a1 Prupe.2G271900_v2.0.a1
pyrus_communis	pycom01g18740
rosa_chinensis	RchiOBHm_Chr1g0373541
rosa_laevigata	RLG00000026817
rosa_roxburghii	Rroxscaffold_4G00284160
rosa_rugosa	Rorug01G0378000 Rorug01G0378000
rosa_samantha	Rh1AG387400 Rh1BG351800 Rh1CG364500 Rh1DG382200
rosa_wichuraiana	Rw1G034790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	944
AccB1I	GGYRCC	1 cut(s)	1031
AciI	CCGC	2 cut(s)	273, 903
AclI	AACGTT	1 cut(s)	636
AclWI	GGATC	1 cut(s)	935
AcoI	YGGCCR	2 cut(s)	46, 922
AcsI	RAATTY	1 cut(s)	753
AcyI	GRCGYC	1 cut(s)	941
AfiI	CCNNNNNNNGG	2 cut(s)	406, 998
AgsI	TTSAA	2 cut(s)	100, 340
AhlI	ACTAGT	1 cut(s)	842
AjiI	CACGTC	1 cut(s)	63
AjnI	CCWGG	3 cut(s)	129, 405, 757
AleI	CACNNNNGTG	2 cut(s)	22, 670
AluBI	AGCT	9 cut(s)	103, 332, 346, 446, 551, 579, 692, 950, 970
AluI	AGCT	9 cut(s)	103, 332, 346, 446, 551, 579, 692, 950, 970
Alw21I	GWGCWC	1 cut(s)	850
Alw26I	GTCTC	5 cut(s)	183, 256, 708, 772, 1017
Alw44I	GTGCAC	1 cut(s)	846
AlwI	GGATC	1 cut(s)	935
AlwNI	CAGNNNCTG	2 cut(s)	554, 950
Ama87I	CYCGRG	1 cut(s)	55
AoxI	GGCC	5 cut(s)	46, 244, 270, 296, 922
ApaLI	GTGCAC	1 cut(s)	846
ApeKI	GCWGC	6 cut(s)	551, 576, 917, 933, 947, 982
ApoI	RAATTY	1 cut(s)	753
Asp700I	GAANNNNTTC	3 cut(s)	25, 104, 431
AspS9I	GGNCC	3 cut(s)	515, 891, 905
AsuHPI	GGTGA	5 cut(s)	16, 368, 555, 854, 876
AsuNHI	GCTAGC	2 cut(s)	572, 629
AvaI	CYCGRG	1 cut(s)	55
AvaII	GGWCC	3 cut(s)	515, 891, 905
AxyI	CCTNAGG	1 cut(s)	437
BaeGI	GKGCMC	1 cut(s)	850
BalI	TGGCCA	1 cut(s)	48
BanI	GGYRCC	1 cut(s)	1031
BarI	GAAGNNNNNNTAC	2 cut(s)	137, 169
Bbv12I	GWGCWC	1 cut(s)	850
BbvCI	CCTCAGC	1 cut(s)	987
BbvI	GCAGC	6 cut(s)	538, 588, 929, 945, 959, 994
BccI	CCATC	5 cut(s)	236, 742, 886, 916, 1043
BceAI	ACGGC	1 cut(s)	196
BciT130I	CCWGG	3 cut(s)	131, 407, 759
BclI	TGATCA	3 cut(s)	217, 508, 816
BcoDI	GTCTC	5 cut(s)	183, 256, 708, 772, 1017
BcuI	ACTAGT	1 cut(s)	842
BfaI	CTAG	6 cut(s)	329, 414, 573, 588, 630, 843
BisI	GCNGC	7 cut(s)	273, 552, 577, 918, 934, 948, 983
BlsI	GCNGC	7 cut(s)	274, 553, 578, 919, 935, 949, 984
Bme1390I	CCNGG	3 cut(s)	131, 407, 759
Bme18I	GGWCC	3 cut(s)	515, 891, 905
BmeT110I	CYCGRG	1 cut(s)	55
BmgBI	CACGTC	1 cut(s)	63
BmgT120I	GGNCC	3 cut(s)	515, 891, 905
BmiI	GGNNCC	3 cut(s)	516, 893, 1033
BmrFI	CCNGG	3 cut(s)	131, 407, 759
BmsI	GCATC	3 cut(s)	214, 774, 949
BmtI	GCTAGC	2 cut(s)	576, 633
Bpu10I	CCTNAGC	1 cut(s)	987
BpuEI	CTTGAG	1 cut(s)	504
BsaHI	GRCGYC	1 cut(s)	941
BsaI	GGTCTC	1 cut(s)	183
BsaJI	CCNNGG	5 cut(s)	299, 405, 826, 887, 912
Bsc4I	CCNNNNNNNGG	2 cut(s)	406, 998
Bse118I	RCCGGY	2 cut(s)	625, 920
Bse21I	CCTNAGG	1 cut(s)	437
BseBI	CCWGG	3 cut(s)	131, 407, 759
BseDI	CCNNGG	5 cut(s)	299, 405, 826, 887, 912
BseGI	GGATG	1 cut(s)	908
BseLI	CCNNNNNNNGG	2 cut(s)	406, 998
BseMII	CTCAG	7 cut(s)	297, 451, 543, 659, 942, 1001, 1010
BseRI	GAGGAG	1 cut(s)	684
BseSI	GKGCMC	1 cut(s)	850
BseX3I	CGGCCG	1 cut(s)	922
BseXI	GCAGC	6 cut(s)	538, 588, 929, 945, 959, 994
BseYI	CCCAGC	1 cut(s)	688
Bsh1285I	CGRYCG	1 cut(s)	925
BshFI	GGCC	5 cut(s)	48, 246, 272, 298, 924
BshNI	GGYRCC	1 cut(s)	1031
BsiEI	CGRYCG	1 cut(s)	925
BsiHKAI	GWGCWC	1 cut(s)	850
BsiHKCI	CYCGRG	1 cut(s)	55
BsiSI	CCGG	3 cut(s)	626, 921, 925
BslFI	GGGAC	1 cut(s)	877
BslI	CCNNNNNNNGG	2 cut(s)	406, 998
BsmAI	GTCTC	5 cut(s)	183, 256, 708, 772, 1017
BsmFI	GGGAC	1 cut(s)	877
BsnI	GGCC	5 cut(s)	48, 246, 272, 298, 924
Bso31I	GGTCTC	1 cut(s)	183
BsoBI	CYCGRG	1 cut(s)	55
Bsp1286I	GDGCHC	1 cut(s)	850
Bsp143I	GATC	5 cut(s)	217, 470, 508, 816, 927
Bsp19I	CCATGG	3 cut(s)	299, 826, 912
BspACI	CCGC	2 cut(s)	273, 903
BspANI	GGCC	5 cut(s)	48, 246, 272, 298, 924
BspCNI	CTCAG	7 cut(s)	298, 450, 542, 658, 943, 1000, 1009
BspLI	GGNNCC	3 cut(s)	516, 893, 1033
BspOI	GCTAGC	2 cut(s)	576, 633
BspPI	GGATC	1 cut(s)	935
BspQI	GCTCTTC	1 cut(s)	306
BspT107I	GGYRCC	1 cut(s)	1031
BspTNI	GGTCTC	1 cut(s)	183
BsrFI	RCCGGY	2 cut(s)	625, 920
BssAI	RCCGGY	2 cut(s)	625, 920
BssECI	CCNNGG	5 cut(s)	299, 405, 826, 887, 912
BssMI	GATC	5 cut(s)	217, 470, 508, 816, 927
BssNI	GRCGYC	1 cut(s)	941
BssT1I	CCWWGG	4 cut(s)	299, 826, 887, 912
Bst2UI	CCWGG	3 cut(s)	131, 407, 759
Bst6I	CTCTTC	3 cut(s)	143, 306, 723
BstACI	GRCGYC	1 cut(s)	941
BstC8I	GCNNGC	5 cut(s)	229, 444, 574, 631, 922
BstDEI	CTNAG	7 cut(s)	306, 437, 529, 645, 951, 987, 996
BstDSI	CCRYGG	3 cut(s)	299, 826, 912
BstF5I	GGATG	1 cut(s)	908
BstKTI	GATC	5 cut(s)	220, 473, 511, 819, 930
BstMAI	GTCTC	5 cut(s)	183, 256, 708, 772, 1017
BstMBI	GATC	5 cut(s)	217, 470, 508, 816, 927
BstMCI	CGRYCG	1 cut(s)	925
BstMWI	GCNNNNNNNGC	7 cut(s)	72, 212, 419, 474, 681, 930, 988
BstNI	CCWGG	3 cut(s)	131, 407, 759
BstNSI	RCATGY	1 cut(s)	490
BstSCI	CCNGG	3 cut(s)	129, 405, 757
BstSLI	GKGCMC	1 cut(s)	850
BstV1I	GCAGC	6 cut(s)	538, 588, 929, 945, 959, 994
BstZI	CGGCCG	1 cut(s)	922
Bsu36I	CCTNAGG	1 cut(s)	437
BsuRI	GGCC	5 cut(s)	48, 246, 272, 298, 924
BtgI	CCRYGG	3 cut(s)	299, 826, 912
BtrI	CACGTC	1 cut(s)	63
BtsCI	GGATG	1 cut(s)	908
Cac8I	GCNNGC	5 cut(s)	229, 444, 574, 631, 922
CaiI	CAGNNNCTG	2 cut(s)	554, 950
Cfr10I	RCCGGY	2 cut(s)	625, 920
Cfr13I	GGNCC	3 cut(s)	515, 891, 905
DdeI	CTNAG	7 cut(s)	306, 437, 529, 645, 951, 987, 996
DpnI	GATC	5 cut(s)	219, 472, 510, 818, 929
DpnII	GATC	5 cut(s)	217, 470, 508, 816, 927
EaeI	YGGCCR	2 cut(s)	46, 922
EagI	CGGCCG	1 cut(s)	922
Eam1104I	CTCTTC	3 cut(s)	143, 306, 723
EarI	CTCTTC	3 cut(s)	143, 306, 723
EclXI	CGGCCG	1 cut(s)	922
Eco130I	CCWWGG	4 cut(s)	299, 826, 887, 912
Eco31I	GGTCTC	1 cut(s)	183
Eco47I	GGWCC	3 cut(s)	515, 891, 905
Eco52I	CGGCCG	1 cut(s)	922
Eco81I	CCTNAGG	1 cut(s)	437
Eco88I	CYCGRG	1 cut(s)	55
EcoO109I	RGGNCCY	2 cut(s)	515, 891
EcoRI	GAATTC	1 cut(s)	753
EcoRII	CCWGG	3 cut(s)	129, 405, 757
EcoT14I	CCWWGG	4 cut(s)	299, 826, 887, 912
ErhI	CCWWGG	4 cut(s)	299, 826, 887, 912
FaqI	GGGAC	1 cut(s)	877
FbaI	TGATCA	3 cut(s)	217, 508, 816
Fnu4HI	GCNGC	7 cut(s)	273, 552, 577, 918, 934, 948, 983
FokI	GGATG	1 cut(s)	895
Fsp4HI	GCNGC	7 cut(s)	273, 552, 577, 918, 934, 948, 983
FspBI	CTAG	6 cut(s)	329, 414, 573, 588, 630, 843
GluI	GCNGC	7 cut(s)	273, 552, 577, 918, 934, 948, 983
GsaI	CCCAGC	1 cut(s)	692
HaeIII	GGCC	5 cut(s)	48, 246, 272, 298, 924
HapII	CCGG	3 cut(s)	626, 921, 925
Hin1I	GRCGYC	1 cut(s)	941
HindIII	AAGCTT	2 cut(s)	101, 344
HinfI	GANTC	8 cut(s)	11, 137, 166, 524, 649, 660, 873, 1041
HpaII	CCGG	3 cut(s)	626, 921, 925
HphI	GGTGA	5 cut(s)	16, 368, 555, 854, 876
Hpy166II	GTNNAC	2 cut(s)	115, 848
Hpy188I	TCNGA	3 cut(s)	241, 648, 1040
Hpy188III	TCNNGA	4 cut(s)	221, 521, 653, 870
Hpy8I	GTNNAC	2 cut(s)	115, 848
HpyAV	CCTTC	2 cut(s)	876, 1026
HpyCH4IV	ACGT	3 cut(s)	62, 636, 941
HpyCH4V	TGCA	7 cut(s)	66, 172, 422, 490, 714, 787, 848
HpyF10VI	GCNNNNNNNGC	7 cut(s)	72, 212, 419, 474, 681, 930, 988
HpyF3I	CTNAG	7 cut(s)	306, 437, 529, 645, 951, 987, 996
HpySE526I	ACGT	3 cut(s)	62, 636, 941
Hsp92I	GRCGYC	1 cut(s)	941
KroI	GCCGGC	1 cut(s)	920
KroNI	GCCGGC	1 cut(s)	922
Ksp22I	TGATCA	3 cut(s)	217, 508, 816
Kzo9I	GATC	5 cut(s)	217, 470, 508, 816, 927
LguI	GCTCTTC	1 cut(s)	306
LmnI	GCTCC	2 cut(s)	697, 1001
Lsp1109I	GCAGC	6 cut(s)	538, 588, 929, 945, 959, 994
LweI	GCATC	3 cut(s)	214, 774, 949
MaeI	CTAG	6 cut(s)	329, 414, 573, 588, 630, 843
MaeII	ACGT	3 cut(s)	62, 636, 941
MaeIII	GTNAC	7 cut(s)	38, 152, 385, 532, 803, 830, 1042
MalI	GATC	5 cut(s)	219, 472, 510, 818, 929
MboI	GATC	5 cut(s)	217, 470, 508, 816, 927
MboII	GAAGA	8 cut(s)	157, 160, 323, 352, 710, 1011, 1014, 1017
MhlI	GDGCHC	1 cut(s)	850
MlsI	TGGCCA	1 cut(s)	48
MluCI	AATT	4 cut(s)	708, 724, 753, 975
MluNI	TGGCCA	1 cut(s)	48
MlyI	GAGTC	1 cut(s)	1050
MmeI	TCCRAC	2 cut(s)	665, 863
Mox20I	TGGCCA	1 cut(s)	48
MroNI	GCCGGC	1 cut(s)	920
MroXI	GAANNNNTTC	3 cut(s)	25, 104, 431
MscI	TGGCCA	1 cut(s)	48
MseI	TTAA	2 cut(s)	495, 972
MslI	CAYNNNNRTG	3 cut(s)	22, 75, 670
Msp20I	TGGCCA	1 cut(s)	48
MspA1I	CMGCKG	2 cut(s)	551, 950
MspI	CCGG	3 cut(s)	626, 921, 925
MspR9I	CCNGG	3 cut(s)	131, 407, 759
MvaI	CCWGG	3 cut(s)	131, 407, 759
MwoI	GCNNNNNNNGC	7 cut(s)	72, 212, 419, 474, 681, 930, 988
NaeI	GCCGGC	1 cut(s)	922
NcoI	CCATGG	3 cut(s)	299, 826, 912
NdeII	GATC	5 cut(s)	217, 470, 508, 816, 927
NgoMIV	GCCGGC	1 cut(s)	920
NheI	GCTAGC	2 cut(s)	572, 629
NlaIV	GGNNCC	3 cut(s)	516, 893, 1033
NmuCI	GTSAC	3 cut(s)	38, 385, 1042
NspI	RCATGY	1 cut(s)	490
OliI	CACNNNNGTG	2 cut(s)	22, 670
PaeR7I	CTCGAG	1 cut(s)	55
PciSI	GCTCTTC	1 cut(s)	306
PdiI	GCCGGC	1 cut(s)	922
PdmI	GAANNNNTTC	3 cut(s)	25, 104, 431
PfeI	GAWTC	7 cut(s)	11, 137, 166, 524, 649, 660, 873
PfoI	TCCNGGA	1 cut(s)	757
PkrI	GCNGC	7 cut(s)	274, 553, 578, 919, 935, 949, 984
PleI	GAGTC	1 cut(s)	1049
PpsI	GAGTC	1 cut(s)	1049
PpuMI	RGGWCCY	2 cut(s)	515, 891
Psp1406I	AACGTT	1 cut(s)	636
Psp5II	RGGWCCY	2 cut(s)	515, 891
Psp6I	CCWGG	3 cut(s)	129, 405, 757
PspFI	CCCAGC	1 cut(s)	688
PspGI	CCWGG	3 cut(s)	129, 405, 757
PspN4I	GGNNCC	3 cut(s)	516, 893, 1033
PspPI	GGNCC	3 cut(s)	515, 891, 905
PspPPI	RGGWCCY	2 cut(s)	515, 891
PspXI	VCTCGAGB	1 cut(s)	55
PstNI	CAGNNNCTG	2 cut(s)	554, 950
PvuII	CAGCTG	2 cut(s)	551, 950
RseI	CAYNNNNRTG	3 cut(s)	22, 75, 670
SapI	GCTCTTC	1 cut(s)	306
SaqAI	TTAA	2 cut(s)	495, 972
SatI	GCNGC	7 cut(s)	273, 552, 577, 918, 934, 948, 983
Sau3AI	GATC	5 cut(s)	217, 470, 508, 816, 927
Sau96I	GGNCC	3 cut(s)	515, 891, 905
SchI	GAGTC	1 cut(s)	1050
ScrFI	CCNGG	3 cut(s)	131, 407, 759
SduI	GDGCHC	1 cut(s)	850
SfaNI	GCATC	3 cut(s)	214, 774, 949
Sfr274I	CTCGAG	1 cut(s)	55
SinI	GGWCC	3 cut(s)	515, 891, 905
SlaI	CTCGAG	1 cut(s)	55
SmiMI	CAYNNNNRTG	3 cut(s)	22, 75, 670
SmlI	CTYRAG	2 cut(s)	55, 519
SmoI	CTYRAG	2 cut(s)	55, 519
SpeI	ACTAGT	1 cut(s)	842
Sse9I	AATT	4 cut(s)	708, 724, 753, 975
SsiI	CCGC	2 cut(s)	273, 903
SspMI	CTAG	6 cut(s)	329, 414, 573, 588, 630, 843
StyD4I	CCNGG	3 cut(s)	129, 405, 757
StyI	CCWWGG	4 cut(s)	299, 826, 887, 912
TaiI	ACGT	3 cut(s)	65, 639, 944
TaqI	TCGA	1 cut(s)	56
TasI	AATT	4 cut(s)	708, 724, 753, 975
TauI	GCSGC	1 cut(s)	275
TfiI	GAWTC	7 cut(s)	11, 137, 166, 524, 649, 660, 873
Tru1I	TTAA	2 cut(s)	495, 972
Tru9I	TTAA	2 cut(s)	495, 972
TseFI	GTSAC	3 cut(s)	38, 385, 1042
TseI	GCWGC	6 cut(s)	551, 576, 917, 933, 947, 982
Tsp45I	GTSAC	3 cut(s)	38, 385, 1042
TspDTI	ATGAA	2 cut(s)	158, 242
TspGWI	ACGGA	1 cut(s)	201
VneI	GTGCAC	1 cut(s)	846
VpaK11BI	GGWCC	3 cut(s)	515, 891, 905
XapI	RAATTY	1 cut(s)	753
XceI	RCATGY	1 cut(s)	490
XhoI	CTCGAG	1 cut(s)	55
XmnI	GAANNNNTTC	3 cut(s)	25, 104, 431
XspI	CTAG	6 cut(s)	329, 414, 573, 588, 630, 843
ZraI	GACGTC	1 cut(s)	942

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.