Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0014293

Physical Location & Seq

Genomic Coordinates Reverse (-)

60341855 .. 60344065

Gene Structure 2211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG382200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGTGAAGGAATCGGCACGAAAGTGTTCGCATTGCGGTCACAACGGGCACAATTCTAGGACTTGCAACCACATAGGGCATTTAACCCCCAATAACAACAAGGGGGTTTGTTTGAAGCTTTTTGGGGTGAACATAATGGAAAGACAGGACGATTCTATGAAGAAGAGTTTCAGCATGGGAAATCTCCAGTCTGCCGGAAACGGAGACCAAAACAACAACATCAATGTCGGAGCTGACGATGCCGGCTACCTCTCCGACGGCCTCATCCATAACAAGAAACGCAAAGCCGCCCATGAAAGAAAAAAAGGGAGACCTTGGACTGAGGAAGAGCATAGAGTATTCCTAGCCGGATTGAAAAAGCTTGGGAAAGGCGATTGGAGAGGTATTGCAAGAAATTTTGTGACAACTAGAACCCCAACACAGGTTGCAAGTCATGCACAGAAGTACTTTCTTAGGCAGGCTACCAACGACAAGCGTAAACGAAGAACAAGTCTATTTGATTTGCACTTCAAAGAACTATCTGAACAATGTGCTCATCAAGATTCTCCACTCTCACCGACAGCCAAAACAGCCGAAGCTTCTTCTTCTTCTTCATCACCAGGTAGCAGCTCTAAAGTTCTGCCGCAAATCACTACAACTACGAACTCGCAACAGGCAAGCATGCCAGGTCAGGTCCTGAACCGATTTCCACATCTATGCTTGGATAGCCCCCCACCTGTTGCTCAAATGCCTGCAGCATCTTGCAGTGTTCCTAATTACGCTTCAGTTATCCCATACATGCAGGTGGGAATGCCTGGGACTGTACCATATACAGCAGCAATGCACTATGGCAGTCCAACTTTCCACTACATGCTTAAGACGCAGGGTGGTAGTTTCGCTACATGTCCACCGGTTATTTCTCATCCATCAGGGATTCCATCATCACCGAAGTCTCTCCCAAGCAGTCCGTCGATGGGAGTTCATCGTAGGAACTCGTCGATATCTAAGAATGATGCTTTAGAGCTTAAAATTGGGCAGCCACAACCATCTCAAGGAGCCAATTTGTCATCCTCTTCTTCTGGGGCAATCAGAGTCACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009743 GO:0009744 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0034285 GO:0042221 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

359

Amino Acids

38.77

Weight (kDa)

9.8

Isoelectric Point (pI)

65.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	105 - 150	1.3e-11	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014293)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61620
fragaria_vesca	FvH4_7g26850
malus_domestica	MD01G1176700.v1.1 MD07G1247900.v1.1
prunus_persica	Prupe.2G271900_v2.0.a1 Prupe.2G271900_v2.0.a1
pyrus_communis	pycom01g18740
rosa_chinensis	RchiOBHm_Chr1g0373541
rosa_laevigata	RLG00000026817
rosa_roxburghii	Rroxscaffold_4G00284160
rosa_rugosa	Rorug01G0378000 Rorug01G0378000
rosa_samantha	Rh1AG387400 Rh1BG351800 Rh1CG364500 Rh1DG382200
rosa_wichuraiana	Rw1G034790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	772
Acc36I	ACCTGC	1 cut(s)	772
AciI	CCGC	3 cut(s)	36, 288, 623
AcsI	RAATTY	1 cut(s)	394
AcuI	CTGAAG	1 cut(s)	747
AfaI	GTAC	2 cut(s)	446, 804
AfiI	CCNNNNNNNGG	3 cut(s)	421, 953, 1031
AflII	CTTAAG	1 cut(s)	854
AflIII	ACRYGT	1 cut(s)	881
AgeI	ACCGGT	1 cut(s)	889
AgsI	TTSAA	3 cut(s)	115, 355, 511
AjnI	CCWGG	3 cut(s)	598, 664, 793
AleI	CACNNNNGTG	1 cut(s)	22
AluBI	AGCT	6 cut(s)	118, 233, 361, 578, 609, 1003
AluI	AGCT	6 cut(s)	118, 233, 361, 578, 609, 1003
Alw21I	GWGCWC	1 cut(s)	535
Alw26I	GTCTC	3 cut(s)	198, 304, 936
AlwNI	CAGNNNCTG	1 cut(s)	676
AoxI	GGCC	1 cut(s)	259
ApeKI	GCWGC	4 cut(s)	606, 734, 815, 1015
ApoI	RAATTY	1 cut(s)	394
ArsI	GACNNNNNNTTYG	2 cut(s)	475, 507
AsiGI	ACCGGT	1 cut(s)	889
Asp700I	GAANNNNTTC	2 cut(s)	25, 167
AspS9I	GGNCC	1 cut(s)	673
AsuHPI	GGTGA	5 cut(s)	16, 139, 546, 588, 915
AvaII	GGWCC	1 cut(s)	673
BaeGI	GKGCMC	1 cut(s)	51
Bbv12I	GWGCWC	1 cut(s)	535
BbvI	GCAGC	4 cut(s)	618, 746, 827, 1027
BccI	CCATC	4 cut(s)	913, 925, 946, 1033
BceAI	ACGGC	1 cut(s)	274
BciT130I	CCWGG	3 cut(s)	600, 666, 795
BcoDI	GTCTC	3 cut(s)	198, 304, 936
BfaI	CTAG	3 cut(s)	57, 344, 408
BfmI	CTRYAG	1 cut(s)	732
BfrI	CTTAAG	1 cut(s)	854
BfuAI	ACCTGC	1 cut(s)	772
BisI	GCNGC	6 cut(s)	288, 607, 623, 735, 816, 1016
BlsI	GCNGC	6 cut(s)	289, 608, 624, 736, 817, 1017
BmcAI	AGTACT	1 cut(s)	446
Bme1390I	CCNGG	3 cut(s)	600, 666, 795
Bme18I	GGWCC	1 cut(s)	673
BmgT120I	GGNCC	1 cut(s)	673
BmiI	GGNNCC	1 cut(s)	1036
BmrFI	CCNGG	3 cut(s)	600, 666, 795
BmsI	GCATC	3 cut(s)	229, 746, 982
BpmI	CTGGAG	1 cut(s)	170
BpuEI	CTTGAG	1 cut(s)	1014
BsaI	GGTCTC	2 cut(s)	198, 304
BsaJI	CCNNGG	2 cut(s)	314, 794
BsaWI	WCCGGW	1 cut(s)	889
Bsc4I	CCNNNNNNNGG	3 cut(s)	421, 953, 1031
Bse118I	RCCGGY	2 cut(s)	242, 889
Bse1I	ACTGG	1 cut(s)	187
Bse3DI	GCAATG	2 cut(s)	31, 825
BseBI	CCWGG	3 cut(s)	600, 666, 795
BseDI	CCNNGG	2 cut(s)	314, 794
BseGI	GGATG	3 cut(s)	264, 901, 1046
BseLI	CCNNNNNNNGG	3 cut(s)	421, 953, 1031
BseMI	GCAATG	2 cut(s)	31, 825
BseMII	CTCAG	1 cut(s)	312
BseNI	ACTGG	1 cut(s)	187
BseSI	GKGCMC	1 cut(s)	51
BseXI	GCAGC	4 cut(s)	618, 746, 827, 1027
BshFI	GGCC	1 cut(s)	261
BshTI	ACCGGT	1 cut(s)	889
BsiHKAI	GWGCWC	1 cut(s)	535
BsiSI	CCGG	4 cut(s)	195, 243, 348, 890
BslFI	GGGAC	1 cut(s)	811
BslI	CCNNNNNNNGG	3 cut(s)	421, 953, 1031
BsmAI	GTCTC	3 cut(s)	198, 304, 936
BsmFI	GGGAC	1 cut(s)	811
BsmI	GAATGC	1 cut(s)	795
BsnI	GGCC	1 cut(s)	261
Bso31I	GGTCTC	2 cut(s)	198, 304
Bsp1286I	GDGCHC	2 cut(s)	51, 535
BspACI	CCGC	3 cut(s)	36, 288, 623
BspANI	GGCC	1 cut(s)	261
BspCNI	CTCAG	1 cut(s)	313
BspLI	GGNNCC	1 cut(s)	1036
BspMAI	CTGCAG	1 cut(s)	736
BspMI	ACCTGC	1 cut(s)	772
BspQI	GCTCTTC	1 cut(s)	321
BspTI	CTTAAG	1 cut(s)	854
BspTNI	GGTCTC	2 cut(s)	198, 304
BsrDI	GCAATG	2 cut(s)	31, 825
BsrFI	RCCGGY	2 cut(s)	242, 889
BsrI	ACTGG	1 cut(s)	187
BssAI	RCCGGY	2 cut(s)	242, 889
BssECI	CCNNGG	2 cut(s)	314, 794
BssT1I	CCWWGG	1 cut(s)	314
Bst2UI	CCWGG	3 cut(s)	600, 666, 795
Bst4CI	ACNGT	1 cut(s)	802
Bst6I	CTCTTC	3 cut(s)	158, 321, 1057
BstAFI	CTTAAG	1 cut(s)	854
BstAPI	GCANNNNNTGC	1 cut(s)	434
BstC8I	GCNNGC	5 cut(s)	244, 459, 658, 662, 732
BstDEI	CTNAG	3 cut(s)	321, 452, 984
BstF5I	GGATG	3 cut(s)	264, 901, 1046
BstMAI	GTCTC	3 cut(s)	198, 304, 936
BstMWI	GCNNNNNNNGC	5 cut(s)	239, 434, 569, 705, 859
BstNI	CCWGG	3 cut(s)	600, 666, 795
BstNSI	RCATGY	4 cut(s)	664, 781, 853, 885
BstSCI	CCNGG	3 cut(s)	598, 664, 793
BstSFI	CTRYAG	1 cut(s)	732
BstSLI	GKGCMC	1 cut(s)	51
BstV1I	GCAGC	4 cut(s)	618, 746, 827, 1027
BsuRI	GGCC	1 cut(s)	261
BtsCI	GGATG	3 cut(s)	264, 901, 1046
BtsI	GCAGTG	1 cut(s)	751
BtsIMutI	CAGTG	1 cut(s)	751
BveI	ACCTGC	1 cut(s)	772
Cac8I	GCNNGC	5 cut(s)	244, 459, 658, 662, 732
CaiI	CAGNNNCTG	1 cut(s)	676
Cfr10I	RCCGGY	2 cut(s)	242, 889
Cfr13I	GGNCC	1 cut(s)	673
CseI	GACGC	1 cut(s)	868
CsiI	ACCWGGT	1 cut(s)	598
Csp6I	GTAC	2 cut(s)	445, 803
CspAI	ACCGGT	1 cut(s)	889
CviAII	CATG	7 cut(s)	175, 293, 434, 661, 778, 850, 882
CviQI	GTAC	2 cut(s)	445, 803
DdeI	CTNAG	3 cut(s)	321, 452, 984
Eam1104I	CTCTTC	3 cut(s)	158, 321, 1057
EarI	CTCTTC	3 cut(s)	158, 321, 1057
Eco130I	CCWWGG	1 cut(s)	314
Eco31I	GGTCTC	2 cut(s)	198, 304
Eco32I	GATATC	1 cut(s)	981
Eco47I	GGWCC	1 cut(s)	673
Eco57I	CTGAAG	1 cut(s)	747
EcoO109I	RGGNCCY	1 cut(s)	673
EcoRII	CCWGG	3 cut(s)	598, 664, 793
EcoRV	GATATC	1 cut(s)	981
EcoT14I	CCWWGG	1 cut(s)	314
ErhI	CCWWGG	1 cut(s)	314
FaeI	CATG	7 cut(s)	178, 296, 437, 664, 781, 853, 885
FaqI	GGGAC	1 cut(s)	811
FatI	CATG	7 cut(s)	174, 292, 433, 660, 777, 849, 881
Fnu4HI	GCNGC	6 cut(s)	288, 607, 623, 735, 816, 1016
FokI	GGATG	3 cut(s)	251, 888, 1033
Fsp4HI	GCNGC	6 cut(s)	288, 607, 623, 735, 816, 1016
FspBI	CTAG	3 cut(s)	57, 344, 408
GluI	GCNGC	6 cut(s)	288, 607, 623, 735, 816, 1016
GsuI	CTGGAG	1 cut(s)	170
HaeIII	GGCC	1 cut(s)	261
HapII	CCGG	4 cut(s)	195, 243, 348, 890
HgaI	GACGC	1 cut(s)	868
Hin1II	CATG	7 cut(s)	178, 296, 437, 664, 781, 853, 885
HindIII	AAGCTT	3 cut(s)	116, 359, 576
HinfI	GANTC	5 cut(s)	11, 152, 542, 913, 1071
HpaII	CCGG	4 cut(s)	195, 243, 348, 890
HphI	GGTGA	5 cut(s)	16, 139, 546, 588, 915
Hpy166II	GTNNAC	3 cut(s)	130, 479, 887
Hpy188I	TCNGA	4 cut(s)	230, 256, 523, 1070
Hpy188III	TCNNGA	2 cut(s)	539, 676
Hpy8I	GTNNAC	3 cut(s)	130, 479, 887
Hpy99I	CGWCG	3 cut(s)	260, 952, 979
HpyCH4III	ACNGT	1 cut(s)	802
HpyCH4V	TGCA	9 cut(s)	66, 389, 428, 437, 505, 734, 744, 781, 823
HpyF10VI	GCNNNNNNNGC	5 cut(s)	239, 434, 569, 705, 859
HpyF3I	CTNAG	3 cut(s)	321, 452, 984
Hsp92II	CATG	7 cut(s)	178, 296, 437, 664, 781, 853, 885
KroI	GCCGGC	1 cut(s)	242
KroNI	GCCGGC	1 cut(s)	244
LguI	GCTCTTC	1 cut(s)	321
LmnI	GCTCC	2 cut(s)	230, 1034
Lsp1109I	GCAGC	4 cut(s)	618, 746, 827, 1027
LweI	GCATC	3 cut(s)	229, 746, 982
MabI	ACCWGGT	1 cut(s)	598
MaeI	CTAG	3 cut(s)	57, 344, 408
MaeIII	GTNAC	3 cut(s)	38, 400, 1072
MhlI	GDGCHC	2 cut(s)	51, 535
MluCI	AATT	5 cut(s)	52, 394, 754, 1008, 1039
MlyI	GAGTC	1 cut(s)	1080
MmeI	TCCRAC	3 cut(s)	208, 279, 860
MnlI	CCTC	5 cut(s)	260, 272, 316, 374, 1060
MroNI	GCCGGC	1 cut(s)	242
MroXI	GAANNNNTTC	2 cut(s)	25, 167
MseI	TTAA	3 cut(s)	83, 855, 1005
MslI	CAYNNNNRTG	3 cut(s)	22, 694, 782
MspCI	CTTAAG	1 cut(s)	854
MspI	CCGG	4 cut(s)	195, 243, 348, 890
MspR9I	CCNGG	3 cut(s)	600, 666, 795
Mva1269I	GAATGC	1 cut(s)	795
MvaI	CCWGG	3 cut(s)	600, 666, 795
MwoI	GCNNNNNNNGC	5 cut(s)	239, 434, 569, 705, 859
NaeI	GCCGGC	1 cut(s)	244
NgoMIV	GCCGGC	1 cut(s)	242
NlaIII	CATG	7 cut(s)	178, 296, 437, 664, 781, 853, 885
NlaIV	GGNNCC	1 cut(s)	1036
NmuCI	GTSAC	3 cut(s)	38, 400, 1072
NspI	RCATGY	4 cut(s)	664, 781, 853, 885
OliI	CACNNNNGTG	1 cut(s)	22
PaeI	GCATGC	1 cut(s)	664
PaqCI	CACCTGC	1 cut(s)	772
PciI	ACATGT	1 cut(s)	881
PciSI	GCTCTTC	1 cut(s)	321
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PctI	GAATGC	1 cut(s)	795
PdiI	GCCGGC	1 cut(s)	244
PdmI	GAANNNNTTC	2 cut(s)	25, 167
PfeI	GAWTC	4 cut(s)	11, 152, 542, 913
PinAI	ACCGGT	1 cut(s)	889
PkrI	GCNGC	6 cut(s)	289, 608, 624, 736, 817, 1017
PleI	GAGTC	1 cut(s)	1079
PpsI	GAGTC	1 cut(s)	1079
PpuMI	RGGWCCY	1 cut(s)	673
PscI	ACATGT	1 cut(s)	881
Psp5II	RGGWCCY	1 cut(s)	673
Psp6I	CCWGG	3 cut(s)	598, 664, 793
PspGI	CCWGG	3 cut(s)	598, 664, 793
PspN4I	GGNNCC	1 cut(s)	1036
PspPI	GGNCC	1 cut(s)	673
PspPPI	RGGWCCY	1 cut(s)	673
PstI	CTGCAG	1 cut(s)	736
PstNI	CAGNNNCTG	1 cut(s)	676
RsaI	GTAC	2 cut(s)	446, 804
RsaNI	GTAC	2 cut(s)	445, 803
RseI	CAYNNNNRTG	3 cut(s)	22, 694, 782
SapI	GCTCTTC	1 cut(s)	321
SaqAI	TTAA	3 cut(s)	83, 855, 1005
SatI	GCNGC	6 cut(s)	288, 607, 623, 735, 816, 1016
Sau96I	GGNCC	1 cut(s)	673
ScaI	AGTACT	1 cut(s)	446
SchI	GAGTC	1 cut(s)	1080
ScrFI	CCNGG	3 cut(s)	600, 666, 795
SduI	GDGCHC	2 cut(s)	51, 535
SexAI	ACCWGGT	1 cut(s)	598
SfaNI	GCATC	3 cut(s)	229, 746, 982
SfcI	CTRYAG	1 cut(s)	732
SinI	GGWCC	1 cut(s)	673
SmiMI	CAYNNNNRTG	3 cut(s)	22, 694, 782
SmlI	CTYRAG	2 cut(s)	854, 1029
SmoI	CTYRAG	2 cut(s)	854, 1029
SphI	GCATGC	1 cut(s)	664
Sse9I	AATT	5 cut(s)	52, 394, 754, 1008, 1039
SsiI	CCGC	3 cut(s)	36, 288, 623
SspMI	CTAG	3 cut(s)	57, 344, 408
StyD4I	CCNGG	3 cut(s)	598, 664, 793
StyI	CCWWGG	1 cut(s)	314
TaaI	ACNGT	1 cut(s)	802
TaqI	TCGA	2 cut(s)	950, 977
TasI	AATT	5 cut(s)	52, 394, 754, 1008, 1039
TatI	WGTACW	1 cut(s)	444
TauI	GCSGC	2 cut(s)	290, 625
TfiI	GAWTC	4 cut(s)	11, 152, 542, 913
Tru1I	TTAA	3 cut(s)	83, 855, 1005
Tru9I	TTAA	3 cut(s)	83, 855, 1005
TscAI	CASTG	1 cut(s)	751
TseFI	GTSAC	3 cut(s)	38, 400, 1072
TseI	GCWGC	4 cut(s)	606, 734, 815, 1015
Tsp45I	GTSAC	3 cut(s)	38, 400, 1072
TspDTI	ATGAA	4 cut(s)	173, 309, 582, 950
TspGWI	ACGGA	2 cut(s)	216, 936
TspRI	CASTG	1 cut(s)	751
Vha464I	CTTAAG	1 cut(s)	854
VpaK11BI	GGWCC	1 cut(s)	673
XapI	RAATTY	1 cut(s)	394
XceI	RCATGY	4 cut(s)	664, 781, 853, 885
XmnI	GAANNNNTTC	2 cut(s)	25, 167
XspI	CTAG	3 cut(s)	57, 344, 408
ZrmI	AGTACT	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.