AT5G62130

Per1-like family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0008262
Physical Location & Seq
Reverse (-)
24950264 .. 24953362
3099 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G62130.3

Sequence Viewer

Length: 1032 bp
ATGGCGCGAAATCTGCCATGGGTTCTGCTTATTATTGTGGTATCGTGTCTTGTTTCAACACTTGAAGCTAGTGAAGGAGATTCTGATTCTCTTTACAAGTCATGTGTTGATCAATGTCAGAAAACTGGATGCGTGGGGGATACTTGCTTCCAACACTGTAAATTTTCAGCTGATGGAAAAGCCATTGACGGTCCATGGTACATGCAAGAGCCACTTTACCTGAGATGGAAACAATGGGATTGCCAAAGTGATTGTCAGTACGAATGCATGATGACAAGAGAAGAAGAAAGAAAAAGAAACGGAGAGAGACCTACCAAGTATTTCGGTAAATGGCCACTCAAACATGTCTACGGAATTCAGGAACCTGTCTCTGTTGCTTTCTCTGCTCTGGATCTTGCAATGCAGTTTCAAGGATGGGTCTCATATTTCATCCTCGTTTACTATAAATTGCCTCTCCAGCCAAATCGGAAAACGTACTACGAGTACAATGGAATAGTGCATATCTACGCCATCATTGTAATGAATTCACTCTTCTGGAGTAGTATTTGTCATAGCAGAGATGTTGAATTGACGGAGAGGCTAGATTACTCTTCAGCTACTGTATTAGCCGGATTTTCGCTTATTCTAGCAATACTCCGGTCCTTCAGTATTCAAGATCAATCTGTCAAAATCATGGTTACTGCACCTATTCTTGCGGTTGTTGCAACTCATATTCTCTACCTTAATTTCTACAACCTCGATGAAGGGCTTCACTGGAAAGTTATATTCGGGATTGGAGGAATAGAGCTAGTAGTATGGGGATTATGGGCGGCTTTAACGTCACATCCATCAAAGTGGAAGCTAAGAGCTTTCTTGATCTCGAGCATACTCACATTGTGTCTTAGAATGTTCGACTTCCCTCCGTACAAAGGCTACATCGATGCTCATGCTCTTTGGCGCGGTGCAGGGATTCCTCTTTCTTACCTTTGGTGGAGTTTCGTCTGCGATGACGCAGTTTTCAGAACCACCGTTAATCTCAAGAAATCCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Per1

Protein Analysis

343

Amino Acids

39.5

Weight (kDa)

7.91

Isoelectric Point (pI)

42.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Per1 PF04080 4 - 264 2.6e-83 Per1-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 348
AccII CGCG 2 cut(s) 7, 939
AciI CCGC 3 cut(s) 695, 809, 939
AclWI GGATC 1 cut(s) 399
AcoI YGGCCR 1 cut(s) 332
AcsI RAATTY 3 cut(s) 161, 354, 523
AcuI CTGAAG 2 cut(s) 576, 628
AdeI CACNNNGTG 1 cut(s) 876
AfaI GTAC 5 cut(s) 200, 260, 476, 485, 905
AfiI CCNNNNNNNGG 1 cut(s) 908
AflIII ACRYGT 1 cut(s) 343
AgsI TTSAA 5 cut(s) 57, 65, 410, 566, 653
AluBI AGCT 6 cut(s) 68, 170, 596, 787, 841, 848
AluI AGCT 6 cut(s) 68, 170, 596, 787, 841, 848
Alw26I GTCTC 3 cut(s) 301, 373, 424
AlwI GGATC 1 cut(s) 399
AlwNI CAGNNNCTG 1 cut(s) 599
Ama87I CYCGRG 1 cut(s) 859
AoxI GGCC 1 cut(s) 332
ApoI RAATTY 3 cut(s) 161, 354, 523
ArsI GACNNNNNNTTYG 2 cut(s) 238, 270
Asp700I GAANNNNTTC 1 cut(s) 747
AspLEI GCGC 2 cut(s) 7, 939
AspS9I GGNCC 2 cut(s) 191, 639
AvaI CYCGRG 1 cut(s) 859
AvaII GGWCC 2 cut(s) 191, 639
BalI TGGCCA 1 cut(s) 334
BccI CCATC 5 cut(s) 167, 219, 408, 518, 835
BcgI CGANNNNNNTGC 2 cut(s) 908, 942
BciVI GTATCC 1 cut(s) 133
BclI TGATCA 1 cut(s) 109
BcoDI GTCTC 3 cut(s) 301, 373, 424
BfaI CTAG 4 cut(s) 69, 581, 626, 788
BfuI GTATCC 1 cut(s) 133
BisI GCNGC 1 cut(s) 810
BlsI GCNGC 1 cut(s) 811
Bme18I GGWCC 2 cut(s) 191, 639
BmeT110I CYCGRG 1 cut(s) 859
BmgT120I GGNCC 2 cut(s) 191, 639
BmiI GGNNCC 1 cut(s) 363
BmsI GCATC 2 cut(s) 119, 910
BpmI CTGGAG 2 cut(s) 440, 556
BpuEI CTTGAG 1 cut(s) 1001
Bsa29I ATCGAT 1 cut(s) 918
BsaI GGTCTC 2 cut(s) 301, 424
BsaJI CCNNGG 2 cut(s) 17, 194
BsaWI WCCGGW 1 cut(s) 636
Bsc4I CCNNNNNNNGG 1 cut(s) 908
Bse1I ACTGG 2 cut(s) 130, 758
Bse3DI GCAATG 1 cut(s) 405
BseCI ATCGAT 1 cut(s) 918
BseDI CCNNGG 2 cut(s) 17, 194
BseGI GGATG 4 cut(s) 134, 419, 429, 823
BseLI CCNNNNNNNGG 1 cut(s) 908
BseMI GCAATG 1 cut(s) 405
BseMII CTCAG 1 cut(s) 212
BseNI ACTGG 2 cut(s) 130, 758
BsgI GTGCAG 2 cut(s) 666, 963
Bsh1236I CGCG 2 cut(s) 7, 939
BshFI GGCC 1 cut(s) 334
BshVI ATCGAT 1 cut(s) 918
BsiHKCI CYCGRG 1 cut(s) 859
BsiSI CCGG 2 cut(s) 609, 637
BslI CCNNNNNNNGG 1 cut(s) 908
BsmAI GTCTC 3 cut(s) 301, 373, 424
BsmI GAATGC 1 cut(s) 269
BsnI GGCC 1 cut(s) 334
Bso31I GGTCTC 2 cut(s) 301, 424
BsoBI CYCGRG 1 cut(s) 859
Bsp143I GATC 4 cut(s) 109, 391, 655, 855
Bsp19I CCATGG 2 cut(s) 17, 194
BspACI CCGC 3 cut(s) 695, 809, 939
BspANI GGCC 1 cut(s) 334
BspCNI CTCAG 1 cut(s) 213
BspDI ATCGAT 1 cut(s) 918
BspFNI CGCG 2 cut(s) 7, 939
BspLI GGNNCC 1 cut(s) 363
BspPI GGATC 1 cut(s) 399
BspTNI GGTCTC 2 cut(s) 301, 424
BsrDI GCAATG 1 cut(s) 405
BsrI ACTGG 2 cut(s) 130, 758
BssECI CCNNGG 2 cut(s) 17, 194
BssMI GATC 4 cut(s) 109, 391, 655, 855
BssT1I CCWWGG 2 cut(s) 17, 194
Bst4CI ACNGT 4 cut(s) 158, 191, 601, 1009
Bst6I CTCTTC 2 cut(s) 536, 595
BstDEI CTNAG 3 cut(s) 221, 842, 881
BstDSI CCRYGG 2 cut(s) 17, 194
BstF5I GGATG 4 cut(s) 134, 419, 429, 823
BstFNI CGCG 2 cut(s) 7, 939
BstHHI GCGC 2 cut(s) 7, 939
BstKTI GATC 4 cut(s) 112, 394, 658, 858
BstMAI GTCTC 3 cut(s) 301, 373, 424
BstMBI GATC 4 cut(s) 109, 391, 655, 855
BstMWI GCNNNNNNNGC 4 cut(s) 13, 383, 457, 701
BstNSI RCATGY 2 cut(s) 205, 347
BstUI CGCG 2 cut(s) 7, 939
BstX2I RGATCY 1 cut(s) 391
BstXI CCANNNNNNTGG 1 cut(s) 834
BstYI RGATCY 1 cut(s) 391
Bsu15I ATCGAT 1 cut(s) 918
BsuI GTATCC 1 cut(s) 133
BsuRI GGCC 1 cut(s) 334
BsuTUI ATCGAT 1 cut(s) 918
BtgI CCRYGG 2 cut(s) 17, 194
BtgZI GCGATG 1 cut(s) 999
BtsCI GGATG 4 cut(s) 134, 419, 429, 823
BtsIMutI CAGTG 2 cut(s) 154, 751
CaiI CAGNNNCTG 1 cut(s) 599
CfoI GCGC 2 cut(s) 7, 939
Cfr13I GGNCC 2 cut(s) 191, 639
ClaI ATCGAT 1 cut(s) 918
CseI GACGC 1 cut(s) 998
Csp6I GTAC 5 cut(s) 199, 259, 475, 484, 904
CviAII CATG 8 cut(s) 18, 102, 195, 202, 268, 344, 673, 926
CviQI GTAC 5 cut(s) 199, 259, 475, 484, 904
DdeI CTNAG 3 cut(s) 221, 842, 881
DpnI GATC 4 cut(s) 111, 393, 657, 857
DpnII GATC 4 cut(s) 109, 391, 655, 855
DraIII CACNNNGTG 1 cut(s) 876
EaeI YGGCCR 1 cut(s) 332
Eam1104I CTCTTC 2 cut(s) 536, 595
EarI CTCTTC 2 cut(s) 536, 595
Eco130I CCWWGG 2 cut(s) 17, 194
Eco31I GGTCTC 2 cut(s) 301, 424
Eco47I GGWCC 2 cut(s) 191, 639
Eco57I CTGAAG 2 cut(s) 576, 628
Eco88I CYCGRG 1 cut(s) 859
EcoRI GAATTC 2 cut(s) 354, 523
EcoT14I CCWWGG 2 cut(s) 17, 194
EcoT22I ATGCAT 1 cut(s) 269
ErhI CCWWGG 2 cut(s) 17, 194
FaeI CATG 8 cut(s) 21, 105, 198, 205, 271, 347, 676, 929
FalI AAGNNNNNCTT 2 cut(s) 198, 230
FatI CATG 8 cut(s) 17, 101, 194, 201, 267, 343, 672, 925
FbaI TGATCA 1 cut(s) 109
FblI GTMKAC 1 cut(s) 348
Fnu4HI GCNGC 1 cut(s) 810
FokI GGATG 4 cut(s) 141, 416, 426, 810
Fsp4HI GCNGC 1 cut(s) 810
FspBI CTAG 4 cut(s) 69, 581, 626, 788
GlaI GCGC 2 cut(s) 6, 938
GluI GCNGC 1 cut(s) 810
GsuI CTGGAG 2 cut(s) 440, 556
HaeIII GGCC 1 cut(s) 334
HapII CCGG 2 cut(s) 609, 637
HgaI GACGC 1 cut(s) 998
HhaI GCGC 2 cut(s) 7, 939
Hin1II CATG 8 cut(s) 21, 105, 198, 205, 271, 347, 676, 929
Hin6I GCGC 2 cut(s) 5, 937
HinP1I GCGC 2 cut(s) 5, 937
HinfI GANTC 3 cut(s) 80, 86, 949
HpaII CCGG 2 cut(s) 609, 637
Hpy166II GTNNAC 2 cut(s) 349, 439
Hpy188I TCNGA 4 cut(s) 85, 120, 468, 1001
Hpy188III TCNNGA 8 cut(s) 359, 389, 535, 653, 769, 853, 859, 1018
Hpy8I GTNNAC 2 cut(s) 349, 439
HpyAV CCTTC 3 cut(s) 68, 652, 737
HpyCH4III ACNGT 4 cut(s) 158, 191, 601, 1009
HpyCH4IV ACGT 2 cut(s) 473, 818
HpyCH4V TGCA 8 cut(s) 205, 267, 398, 403, 499, 683, 704, 944
HpyF10VI GCNNNNNNNGC 4 cut(s) 13, 383, 457, 701
HpyF3I CTNAG 3 cut(s) 221, 842, 881
HpySE526I ACGT 2 cut(s) 473, 818
Hsp92II CATG 8 cut(s) 21, 105, 198, 205, 271, 347, 676, 929
HspAI GCGC 2 cut(s) 5, 937
Ksp22I TGATCA 1 cut(s) 109
Kzo9I GATC 4 cut(s) 109, 391, 655, 855
LweI GCATC 2 cut(s) 119, 910
MaeI CTAG 4 cut(s) 69, 581, 626, 788
MaeII ACGT 2 cut(s) 473, 818
MaeIII GTNAC 2 cut(s) 676, 819
MalI GATC 4 cut(s) 111, 393, 657, 857
MboI GATC 4 cut(s) 109, 391, 655, 855
MboII GAAGA 4 cut(s) 293, 296, 523, 582
MflI RGATCY 1 cut(s) 391
MlsI TGGCCA 1 cut(s) 334
MluCI AATT 6 cut(s) 161, 354, 446, 523, 566, 724
MluNI TGGCCA 1 cut(s) 334
MmeI TCCRAC 1 cut(s) 175
MnlI CCTC 7 cut(s) 443, 462, 570, 746, 770, 909, 963
Mox20I TGGCCA 1 cut(s) 334
Mph1103I ATGCAT 1 cut(s) 269
MroXI GAANNNNTTC 1 cut(s) 747
MscI TGGCCA 1 cut(s) 334
MseI TTAA 3 cut(s) 723, 815, 1011
MslI CAYNNNNRTG 2 cut(s) 518, 832
Msp20I TGGCCA 1 cut(s) 334
MspA1I CMGCKG 1 cut(s) 170
MspI CCGG 2 cut(s) 609, 637
Mva1269I GAATGC 1 cut(s) 269
MvnI CGCG 2 cut(s) 7, 939
MwoI GCNNNNNNNGC 4 cut(s) 13, 383, 457, 701
NcoI CCATGG 2 cut(s) 17, 194
NdeII GATC 4 cut(s) 109, 391, 655, 855
NlaIII CATG 8 cut(s) 21, 105, 198, 205, 271, 347, 676, 929
NlaIV GGNNCC 1 cut(s) 363
NmuCI GTSAC 1 cut(s) 819
NsiI ATGCAT 1 cut(s) 269
NspI RCATGY 2 cut(s) 205, 347
PaeR7I CTCGAG 1 cut(s) 859
PciI ACATGT 1 cut(s) 343
PctI GAATGC 1 cut(s) 269
PdmI GAANNNNTTC 1 cut(s) 747
PfeI GAWTC 3 cut(s) 80, 86, 949
PkrI GCNGC 1 cut(s) 811
PscI ACATGT 1 cut(s) 343
PspN4I GGNNCC 1 cut(s) 363
PspPI GGNCC 2 cut(s) 191, 639
PstNI CAGNNNCTG 1 cut(s) 599
PsuI RGATCY 1 cut(s) 391
PvuII CAGCTG 1 cut(s) 170
RsaI GTAC 5 cut(s) 200, 260, 476, 485, 905
RsaNI GTAC 5 cut(s) 199, 259, 475, 484, 904
RseI CAYNNNNRTG 2 cut(s) 518, 832
SaqAI TTAA 3 cut(s) 723, 815, 1011
SatI GCNGC 1 cut(s) 810
Sau3AI GATC 4 cut(s) 109, 391, 655, 855
Sau96I GGNCC 2 cut(s) 191, 639
SfaNI GCATC 2 cut(s) 119, 910
Sfr274I CTCGAG 1 cut(s) 859
SinI GGWCC 2 cut(s) 191, 639
SlaI CTCGAG 1 cut(s) 859
SmiMI CAYNNNNRTG 2 cut(s) 518, 832
SmlI CTYRAG 2 cut(s) 859, 1016
SmoI CTYRAG 2 cut(s) 859, 1016
Sse9I AATT 6 cut(s) 161, 354, 446, 523, 566, 724
SsiI CCGC 3 cut(s) 695, 809, 939
SspMI CTAG 4 cut(s) 69, 581, 626, 788
StyI CCWWGG 2 cut(s) 17, 194
TaaI ACNGT 4 cut(s) 158, 191, 601, 1009
TaiI ACGT 2 cut(s) 476, 821
TaqI TCGA 4 cut(s) 738, 860, 891, 918
TasI AATT 6 cut(s) 161, 354, 446, 523, 566, 724
TatI WGTACW 1 cut(s) 483
TauI GCSGC 1 cut(s) 812
TfiI GAWTC 3 cut(s) 80, 86, 949
Tru1I TTAA 3 cut(s) 723, 815, 1011
Tru9I TTAA 3 cut(s) 723, 815, 1011
TscAI CASTG 2 cut(s) 161, 758
TseFI GTSAC 1 cut(s) 819
Tsp45I GTSAC 1 cut(s) 819
TspDTI ATGAA 3 cut(s) 418, 536, 756
TspGWI ACGGA 4 cut(s) 315, 366, 587, 891
TspRI CASTG 2 cut(s) 161, 758
VpaK11BI GGWCC 2 cut(s) 191, 639
XapI RAATTY 3 cut(s) 161, 354, 523
XceI RCATGY 2 cut(s) 205, 347
XhoI CTCGAG 1 cut(s) 859
XmiI GTMKAC 1 cut(s) 348
XmnI GAANNNNTTC 1 cut(s) 747
XspI CTAG 4 cut(s) 69, 581, 626, 788
Zsp2I ATGCAT 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.