MD07G1262700.v1.1

post-GPI attachment to proteins factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0008262
Physical Location & Seq
Forward (+)
33188284 .. 33191309
3026 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1262700.v1.1.491

Sequence Viewer

Length: 1029 bp
ATGGCGCAGCTTCGTTGCATTCTCCTCCTCGCTTTGCTCTCCTCTCTGCTTCCTGCTCTTCGCGCCAGTGATGGCGATGCTGATCCGATTTACAAGTCTTGTGTGGCGGAGTGCGAAAAATCTGGGTGTGTAGGGGACACATGCTTTCAACACTGTAAATTTTCTTCAGATGGGAAACCTATTGATGGTCCGTGGTACATGCAAGAGCCCCTCTATTTGCGCTGGAAACAATGGGACTGTCGCAGTGACTGCAGGTACCACTGCATGCTTGCTAGGGAGGAAGAGAGAGAGAAACTCGGCAATAAGCCTGTCAAATACCATGGGAAATGGCCATTGCGACGTGTTTATGGCATCCAGGAACCCATTGCTGTTGCTCTCTGTGCTATCAATCTTGCCATTCAATTTCATGGTTGGATATCTTTTTTCATCCTTGTATACTACAAGTTGCCTTTGAATCCAAATAAGAAGACGTACTACGAGTATACTGGTATGTGGCACATCTATGGGATCTTATCAATGAATGCCTGGTTTTGGAGTGGGGTATTTCACAGCCGAGACGTAGAGTTGACAGAGAAGCTGGATTATTCTTCTTCTGTAGCACTACTTGGATTTTCACTCATTCTGACCCTATTTCGAGCTTTTAATGTGAGAGATGAGGCTGCAAGGGTCATGGTTTCTGCTCCGCTGATTGCTTTCGTGACCACACACATACTGTACCTGAACTTCTATAAACTTGATTACGGTTTGAATGTGAAAGTGTGCATGGCCATGGGTATTGTTCAGCTTCTTACATGGGCAGTTTGGGCTGGTATTAGTTGCCATCCATCGCGCTGGAAGTTGTGGGTGGTAGTGGCAGGAGGAGCCCTTGCCCTGTTCTTCGAGATATACGACCTCCCACCTTACCGAGGCTTTATAGATGCGCACGCTCTCTGGAACGCAATCAACATACCTGTTACATACCTCTGGTGGAGTTTTGTGAGGGATGATGCCGAGTTTGTTACATCAGCTCACCTTAAGAAAGCAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Per1

Protein Analysis

343

Amino Acids

39.39

Weight (kDa)

8.5

Isoelectric Point (pI)

42.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Per1 PF04080 70 - 330 4.2e-89 Per1-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 921
Acc36I ACCTGC 1 cut(s) 243
Acc65I GGTACC 1 cut(s) 255
AccB1I GGYRCC 1 cut(s) 255
AccI GTMKAC 2 cut(s) 435, 482
AccII CGCG 2 cut(s) 63, 829
AciI CCGC 2 cut(s) 107, 683
AclWI GGATC 2 cut(s) 77, 515
AcoI YGGCCR 2 cut(s) 329, 765
AcsI RAATTY 1 cut(s) 158
AcuI CTGAAG 1 cut(s) 150
AfaI GTAC 4 cut(s) 197, 257, 473, 716
AfiI CCNNNNNNNGG 3 cut(s) 185, 531, 905
AflII CTTAAG 1 cut(s) 1013
AflIII ACRYGT 1 cut(s) 340
AgsI TTSAA 4 cut(s) 149, 401, 454, 748
AjiI CACGTC 1 cut(s) 341
AjnI CCWGG 2 cut(s) 354, 524
AluBI AGCT 5 cut(s) 10, 577, 638, 784, 1007
AluI AGCT 5 cut(s) 10, 577, 638, 784, 1007
Alw26I GTCTC 1 cut(s) 549
AlwI GGATC 2 cut(s) 77, 515
AlwNI CAGNNNCTG 1 cut(s) 249
AoxI GGCC 2 cut(s) 329, 765
ApeKI GCWGC 2 cut(s) 7, 659
ApoI RAATTY 1 cut(s) 158
Asp718I GGTACC 1 cut(s) 255
AspLEI GCGC 5 cut(s) 7, 65, 222, 831, 922
AspS9I GGNCC 1 cut(s) 188
AsuHPI GGTGA 1 cut(s) 1001
AvaII GGWCC 1 cut(s) 188
BalI TGGCCA 2 cut(s) 331, 767
BanI GGYRCC 1 cut(s) 255
BanII GRGCYC 2 cut(s) 210, 865
BarI GAAGNNNNNNTAC 6 cut(s) 148, 180, 458, 490, 707, 739
BbsI GAAGAC 1 cut(s) 473
BbvI GCAGC 2 cut(s) 19, 646
BccI CCATC 5 cut(s) 65, 164, 179, 828, 832
BciT130I CCWGG 2 cut(s) 356, 526
BcoDI GTCTC 1 cut(s) 549
BfaI CTAG 1 cut(s) 273
BfmI CTRYAG 2 cut(s) 250, 594
BfrI CTTAAG 1 cut(s) 1013
BfuAI ACCTGC 1 cut(s) 243
BisI GCNGC 2 cut(s) 8, 660
BlsI GCNGC 2 cut(s) 9, 661
Bme1390I CCNGG 2 cut(s) 356, 526
Bme18I GGWCC 1 cut(s) 188
BmgBI CACGTC 1 cut(s) 341
BmgT120I GGNCC 1 cut(s) 188
BmiI GGNNCC 3 cut(s) 257, 360, 862
BmrFI CCNGG 2 cut(s) 356, 526
BmsI GCATC 4 cut(s) 67, 360, 907, 976
BpiI GAAGAC 1 cut(s) 473
BplI GAGNNNNNCTC 2 cut(s) 279, 311
BsaBI GATNNNNATC 1 cut(s) 81
BsaJI CCNNGG 4 cut(s) 191, 319, 768, 904
Bsc4I CCNNNNNNNGG 3 cut(s) 185, 531, 905
Bse1I ACTGG 2 cut(s) 66, 490
Bse3DI GCAATG 2 cut(s) 332, 363
Bse8I GATNNNNATC 1 cut(s) 81
BseBI CCWGG 2 cut(s) 356, 526
BseDI CCNNGG 4 cut(s) 191, 319, 768, 904
BseGI GGATG 4 cut(s) 351, 426, 820, 988
BseJI GATNNNNATC 1 cut(s) 81
BseLI CCNNNNNNNGG 3 cut(s) 185, 531, 905
BseMI GCAATG 2 cut(s) 332, 363
BseNI ACTGG 2 cut(s) 66, 490
BseRI GAGGAG 4 cut(s) 14, 17, 31, 873
BseXI GCAGC 2 cut(s) 19, 646
Bsh1236I CGCG 2 cut(s) 63, 829
BshFI GGCC 2 cut(s) 331, 767
BshNI GGYRCC 1 cut(s) 255
BslFI GGGAC 2 cut(s) 149, 248
BslI CCNNNNNNNGG 3 cut(s) 185, 531, 905
BsmAI GTCTC 1 cut(s) 549
BsmBI CGTCTC 1 cut(s) 549
BsmFI GGGAC 2 cut(s) 149, 248
BsmI GAATGC 2 cut(s) 18, 526
BsnI GGCC 2 cut(s) 331, 767
Bsp1286I GDGCHC 2 cut(s) 210, 865
Bsp143I GATC 2 cut(s) 82, 507
Bsp19I CCATGG 2 cut(s) 319, 768
BspACI CCGC 2 cut(s) 107, 683
BspANI GGCC 2 cut(s) 331, 767
BspFNI CGCG 2 cut(s) 63, 829
BspLI GGNNCC 3 cut(s) 257, 360, 862
BspMAI CTGCAG 1 cut(s) 254
BspMI ACCTGC 1 cut(s) 243
BspPI GGATC 2 cut(s) 77, 515
BspQI GCTCTTC 1 cut(s) 63
BspT107I GGYRCC 1 cut(s) 255
BspTI CTTAAG 1 cut(s) 1013
BsrDI GCAATG 2 cut(s) 332, 363
BsrI ACTGG 2 cut(s) 66, 490
BssECI CCNNGG 4 cut(s) 191, 319, 768, 904
BssMI GATC 2 cut(s) 82, 507
BssNAI GTATAC 2 cut(s) 436, 483
BssT1I CCWWGG 2 cut(s) 319, 768
Bst1107I GTATAC 2 cut(s) 436, 483
Bst2UI CCWGG 2 cut(s) 356, 526
Bst4CI ACNGT 4 cut(s) 155, 239, 714, 743
Bst6I CTCTTC 2 cut(s) 63, 276
BstAFI CTTAAG 1 cut(s) 1013
BstAPI GCANNNNNTGC 1 cut(s) 249
BstC8I GCNNGC 3 cut(s) 266, 270, 924
BstDSI CCRYGG 3 cut(s) 191, 319, 768
BstENI CCTNNNNNAGG 1 cut(s) 903
BstF5I GGATG 4 cut(s) 351, 426, 820, 988
BstFNI CGCG 2 cut(s) 63, 829
BstHHI GCGC 5 cut(s) 7, 65, 222, 831, 922
BstKTI GATC 2 cut(s) 85, 510
BstMAI GTCTC 1 cut(s) 549
BstMBI GATC 2 cut(s) 82, 507
BstMWI GCNNNNNNNGC 5 cut(s) 62, 249, 380, 803, 860
BstNI CCWGG 2 cut(s) 356, 526
BstNSI RCATGY 3 cut(s) 144, 202, 268
BstSCI CCNGG 2 cut(s) 354, 524
BstSFI CTRYAG 2 cut(s) 250, 594
BstUI CGCG 2 cut(s) 63, 829
BstV1I GCAGC 2 cut(s) 19, 646
BstV2I GAAGAC 1 cut(s) 473
BstX2I RGATCY 1 cut(s) 507
BstXI CCANNNNNNTGG 1 cut(s) 831
BstYI RGATCY 1 cut(s) 507
BstZ17I GTATAC 2 cut(s) 436, 483
BsuRI GGCC 2 cut(s) 331, 767
BtgI CCRYGG 3 cut(s) 191, 319, 768
BtgZI GCGATG 2 cut(s) 90, 810
BtrI CACGTC 1 cut(s) 341
BtsCI GGATG 4 cut(s) 351, 426, 820, 988
BtsI GCAGTG 2 cut(s) 250, 259
BtsIMutI CAGTG 4 cut(s) 73, 151, 250, 259
BveI ACCTGC 1 cut(s) 243
Cac8I GCNNGC 3 cut(s) 266, 270, 924
CaiI CAGNNNCTG 1 cut(s) 249
CfoI GCGC 5 cut(s) 7, 65, 222, 831, 922
Cfr13I GGNCC 1 cut(s) 188
Csp6I GTAC 4 cut(s) 196, 256, 472, 715
CviAII CATG 9 cut(s) 141, 199, 265, 320, 407, 670, 763, 769, 792
CviQI GTAC 4 cut(s) 196, 256, 472, 715
DpnI GATC 2 cut(s) 84, 509
DpnII GATC 2 cut(s) 82, 507
EaeI YGGCCR 2 cut(s) 329, 765
Eam1104I CTCTTC 2 cut(s) 63, 276
EarI CTCTTC 2 cut(s) 63, 276
EciI GGCGGA 1 cut(s) 122
Eco130I CCWWGG 2 cut(s) 319, 768
Eco24I GRGCYC 2 cut(s) 210, 865
Eco32I GATATC 1 cut(s) 417
Eco47I GGWCC 1 cut(s) 188
Eco57I CTGAAG 1 cut(s) 150
EcoNI CCTNNNNNAGG 1 cut(s) 903
EcoRII CCWGG 2 cut(s) 354, 524
EcoRV GATATC 1 cut(s) 417
EcoT14I CCWWGG 2 cut(s) 319, 768
EcoT38I GRGCYC 2 cut(s) 210, 865
ErhI CCWWGG 2 cut(s) 319, 768
Esp3I CGTCTC 1 cut(s) 549
FaeI CATG 9 cut(s) 144, 202, 268, 323, 410, 673, 766, 772, 795
FaqI GGGAC 2 cut(s) 149, 248
FatI CATG 9 cut(s) 140, 198, 264, 319, 406, 669, 762, 768, 791
FblI GTMKAC 2 cut(s) 435, 482
Fnu4HI GCNGC 2 cut(s) 8, 660
FokI GGATG 4 cut(s) 338, 413, 807, 995
FriOI GRGCYC 2 cut(s) 210, 865
Fsp4HI GCNGC 2 cut(s) 8, 660
FspAI RTGCGCAY 1 cut(s) 921
FspBI CTAG 1 cut(s) 273
FspI TGCGCA 1 cut(s) 921
GlaI GCGC 5 cut(s) 6, 64, 221, 830, 921
GluI GCNGC 2 cut(s) 8, 660
HaeIII GGCC 2 cut(s) 331, 767
HhaI GCGC 5 cut(s) 7, 65, 222, 831, 922
Hin1II CATG 9 cut(s) 144, 202, 268, 323, 410, 673, 766, 772, 795
Hin6I GCGC 5 cut(s) 5, 63, 220, 829, 920
HinP1I GCGC 5 cut(s) 5, 63, 220, 829, 920
HincII GTYRAC 1 cut(s) 567
HindII GTYRAC 1 cut(s) 567
HinfI GANTC 1 cut(s) 454
HphI GGTGA 1 cut(s) 1001
Hpy166II GTNNAC 3 cut(s) 436, 483, 567
Hpy188I TCNGA 3 cut(s) 87, 169, 624
Hpy188III TCNNGA 3 cut(s) 697, 880, 931
Hpy8I GTNNAC 3 cut(s) 436, 483, 567
Hpy99I CGWCG 1 cut(s) 342
HpyCH4III ACNGT 4 cut(s) 155, 239, 714, 743
HpyCH4IV ACGT 3 cut(s) 340, 470, 558
HpyCH4V TGCA 6 cut(s) 18, 202, 252, 264, 662, 762
HpyF10VI GCNNNNNNNGC 5 cut(s) 62, 249, 380, 803, 860
HpySE526I ACGT 3 cut(s) 340, 470, 558
Hsp92II CATG 9 cut(s) 144, 202, 268, 323, 410, 673, 766, 772, 795
HspAI GCGC 5 cut(s) 5, 63, 220, 829, 920
KpnI GGTACC 1 cut(s) 259
Kzo9I GATC 2 cut(s) 82, 507
LguI GCTCTTC 1 cut(s) 63
LmnI GCTCC 2 cut(s) 685, 860
Lsp1109I GCAGC 2 cut(s) 19, 646
LweI GCATC 4 cut(s) 67, 360, 907, 976
MaeI CTAG 1 cut(s) 273
MaeII ACGT 3 cut(s) 340, 470, 558
MaeIII GTNAC 4 cut(s) 245, 697, 952, 997
MalI GATC 2 cut(s) 84, 509
MboI GATC 2 cut(s) 82, 507
MboII GAAGA 7 cut(s) 50, 156, 293, 478, 579, 582, 868
MflI RGATCY 1 cut(s) 507
MhlI GDGCHC 2 cut(s) 210, 865
MlsI TGGCCA 2 cut(s) 331, 767
MluCI AATT 2 cut(s) 158, 401
MluNI TGGCCA 2 cut(s) 331, 767
MmeI TCCRAC 1 cut(s) 392
Mox20I TGGCCA 2 cut(s) 331, 767
MscI TGGCCA 2 cut(s) 331, 767
MseI TTAA 2 cut(s) 642, 1014
MslI CAYNNNNRTG 2 cut(s) 501, 767
Msp20I TGGCCA 2 cut(s) 331, 767
MspA1I CMGCKG 1 cut(s) 685
MspCI CTTAAG 1 cut(s) 1013
MspR9I CCNGG 2 cut(s) 356, 526
Mva1269I GAATGC 2 cut(s) 18, 526
MvaI CCWGG 2 cut(s) 356, 526
MvnI CGCG 2 cut(s) 63, 829
MwoI GCNNNNNNNGC 5 cut(s) 62, 249, 380, 803, 860
NcoI CCATGG 2 cut(s) 319, 768
NdeII GATC 2 cut(s) 82, 507
NlaIII CATG 9 cut(s) 144, 202, 268, 323, 410, 673, 766, 772, 795
NlaIV GGNNCC 3 cut(s) 257, 360, 862
NmeAIII GCCGAG 3 cut(s) 276, 578, 1015
NmuCI GTSAC 2 cut(s) 245, 697
NsbI TGCGCA 1 cut(s) 921
NspI RCATGY 3 cut(s) 144, 202, 268
PaeI GCATGC 1 cut(s) 268
PciSI GCTCTTC 1 cut(s) 63
PcsI WCGNNNNNNNCGW 1 cut(s) 885
PctI GAATGC 2 cut(s) 18, 526
PfeI GAWTC 1 cut(s) 454
PfoI TCCNGGA 1 cut(s) 354
PkrI GCNGC 2 cut(s) 9, 661
Psp6I CCWGG 2 cut(s) 354, 524
PspGI CCWGG 2 cut(s) 354, 524
PspN4I GGNNCC 3 cut(s) 257, 360, 862
PspPI GGNCC 1 cut(s) 188
PstI CTGCAG 1 cut(s) 254
PstNI CAGNNNCTG 1 cut(s) 249
PsuI RGATCY 1 cut(s) 507
RsaI GTAC 4 cut(s) 197, 257, 473, 716
RsaNI GTAC 4 cut(s) 196, 256, 472, 715
RseI CAYNNNNRTG 2 cut(s) 501, 767
SapI GCTCTTC 1 cut(s) 63
SaqAI TTAA 2 cut(s) 642, 1014
SatI GCNGC 2 cut(s) 8, 660
Sau3AI GATC 2 cut(s) 82, 507
Sau96I GGNCC 1 cut(s) 188
ScrFI CCNGG 2 cut(s) 356, 526
SduI GDGCHC 2 cut(s) 210, 865
SfaNI GCATC 4 cut(s) 67, 360, 907, 976
SfcI CTRYAG 2 cut(s) 250, 594
SinI GGWCC 1 cut(s) 188
SmiMI CAYNNNNRTG 2 cut(s) 501, 767
SmlI CTYRAG 1 cut(s) 1013
SmoI CTYRAG 1 cut(s) 1013
SphI GCATGC 1 cut(s) 268
Sse9I AATT 2 cut(s) 158, 401
SsiI CCGC 2 cut(s) 107, 683
SspMI CTAG 1 cut(s) 273
StyD4I CCNGG 2 cut(s) 354, 524
StyI CCWWGG 2 cut(s) 319, 768
TaaI ACNGT 4 cut(s) 155, 239, 714, 743
TaiI ACGT 3 cut(s) 343, 473, 561
TaqI TCGA 2 cut(s) 634, 879
TasI AATT 2 cut(s) 158, 401
TfiI GAWTC 1 cut(s) 454
Tru1I TTAA 2 cut(s) 642, 1014
Tru9I TTAA 2 cut(s) 642, 1014
TscAI CASTG 4 cut(s) 73, 158, 250, 266
TseFI GTSAC 2 cut(s) 245, 697
TseI GCWGC 2 cut(s) 7, 659
Tsp45I GTSAC 2 cut(s) 245, 697
TspDTI ATGAA 3 cut(s) 395, 415, 533
TspGWI ACGGA 1 cut(s) 180
TspRI CASTG 4 cut(s) 73, 158, 250, 266
Vha464I CTTAAG 1 cut(s) 1013
VpaK11BI GGWCC 1 cut(s) 188
XagI CCTNNNNNAGG 1 cut(s) 903
XapI RAATTY 1 cut(s) 158
XceI RCATGY 3 cut(s) 144, 202, 268
XmiI GTMKAC 2 cut(s) 435, 482
XspI CTAG 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.