Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0008262

Physical Location & Seq

Genomic Coordinates Forward (+)

28385318 .. 28388409

Gene Structure 3092 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G289300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGCTCCGCTTCGTTGCATTCTCTTCCTCGCTGCACTCTGCTCTCTGATTCCTTCTCTTCACGCTAGCGCTGGCGATGCTGATCCGATTTACAAGTCTTGTGTGGTGCAGTGTGAAAAATCTGGATGTGTAGGAGAGAAATGCTTTCAACACTGTAAATTTTCATCTGATGGGAAACCTATTGATGGTCCATGGTACATGCAAGAACCGCTTTATTTGCGCTGGAAACAATGGGACTGCCGCAGTGACTGCAGGTATCACTGCATGCTTGCTAGGGAGGAAGAGAGAGAGAAACTTGGTGATAAGCCTGTCAAGTATCATGGAAAATGGCCATTTCAGCGTGTTTATGGCATCCAGGAACCTGTTGCTGTTGCTCTTTCTGCTCTCAATCTTGCCATGCAATTTCATGGTTGGATATCTTTTTTCATCCTTGTATACTACAAATTGCCTTTGAATCCAAATAAGAGGACTTACTACGAATATACTGGCCTGTGGCACATCTATGGGATCTTATCAATGAACTCTAGGTTTTGGAGTGGTGTATTTCACAGCCGAGATGTGGAGTTAACAGAGAAGCTAGACATTTCTTCTGCTGTAGCACTACTTGGATTCTCACTCATTCTAGCATTACTTCGAGCTTTTAATGTGAGAGATGAGGCTGCCAGAGTCATGGTTTCTGCTCCGCTGATTGCATTCGTGACCACACACGTACTGTACCTGAACTTCTATAAACTTGATTACGGTTTGAACATGAAAGTGTGCATGGCCATGGGCATTGCTCAGCTTCTTACATGGGCAGTTTGGGCTGGTGTTACTCGACATCCGTCACGCTGGAAGTTGTGGGTGGTGGTGGCAGGAGGAGGCCTTGCCATGGTCTTCGAGATATATGACTTCCCACCTTACCGGGGTTATATAGATGCGCTTGCTCTCTGGAATGCAATCAACATACCTCTTACATACCTTTGGTGGAGTTTTGTCAGGGATGATGCTGAGTTTATGACATCGGCCCTCCTGAAGAAAGCAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Per1

Protein Analysis

343

Amino Acids

39.29

Weight (kDa)

8.75

Isoelectric Point (pI)

37.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008262)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62130 AT5G62130 AT5G62130 AT5G62130
fragaria_vesca	FvH4_7g28930 FvH4_7g28930
malus_domestica	MD01G1195900.v1.1 MD07G1262700.v1.1
prunus_persica	Prupe.2G289300_v2.0.a1
pyrus_communis	pycom01g20650 pycom07g24180
rosa_chinensis	RchiOBHm_Chr1g0376601
rosa_laevigata	RLG00000026594
rosa_multiflora	Rmu_co8329573.1_g000001 Rmu_sc0001308.1_g000001 Rmu_sc0025342.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281950
rosa_rugosa	Rorug01G0396700
rosa_samantha	Rh1AG413300 Rh1BG373000 Rh1CG386900 Rh1DG403900
rosa_wichuraiana	Rw1G036240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	243
AccI	GTMKAC	1 cut(s)	435
AciI	CCGC	4 cut(s)	8, 209, 241, 683
AclWI	GGATC	2 cut(s)	77, 515
AcoI	YGGCCR	2 cut(s)	329, 765
AcsI	RAATTY	1 cut(s)	158
AfaI	GTAC	3 cut(s)	197, 711, 716
AfeI	AGCGCT	1 cut(s)	70
AfiI	CCNNNNNNNGG	4 cut(s)	185, 559, 871, 905
AflIII	ACRYGT	1 cut(s)	706
AgsI	TTSAA	3 cut(s)	149, 454, 748
AjnI	CCWGG	1 cut(s)	354
AluBI	AGCT	3 cut(s)	577, 638, 784
AluI	AGCT	3 cut(s)	577, 638, 784
AlwI	GGATC	2 cut(s)	77, 515
AlwNI	CAGNNNCTG	1 cut(s)	249
Aor51HI	AGCGCT	1 cut(s)	70
AoxI	GGCC	5 cut(s)	329, 487, 765, 862, 1005
ApeKI	GCWGC	2 cut(s)	32, 659
ApoI	RAATTY	1 cut(s)	158
AspLEI	GCGC	3 cut(s)	71, 222, 922
AspS9I	GGNCC	2 cut(s)	188, 1006
AsuC2I	CCSGG	1 cut(s)	905
AsuHPI	GGTGA	1 cut(s)	311
AsuNHI	GCTAGC	1 cut(s)	65
AvaII	GGWCC	1 cut(s)	188
BalI	TGGCCA	2 cut(s)	331, 767
BarI	GAAGNNNNNNTAC	2 cut(s)	707, 739
BbsI	GAAGAC	1 cut(s)	868
BbvI	GCAGC	2 cut(s)	19, 646
BccI	CCATC	2 cut(s)	164, 179
BciT130I	CCWGG	1 cut(s)	356
BcnI	CCSGG	1 cut(s)	905
BfaI	CTAG	5 cut(s)	66, 273, 525, 578, 623
BfmI	CTRYAG	2 cut(s)	250, 594
BfoI	RGCGCY	1 cut(s)	72
BfuAI	ACCTGC	1 cut(s)	243
BisI	GCNGC	3 cut(s)	33, 241, 660
BlpI	GCTNAGC	1 cut(s)	780
BlsI	GCNGC	3 cut(s)	34, 242, 661
Bme1390I	CCNGG	2 cut(s)	356, 905
Bme18I	GGWCC	1 cut(s)	188
BmgT120I	GGNCC	2 cut(s)	188, 1006
BmiI	GGNNCC	2 cut(s)	6, 360
BmrFI	CCNGG	2 cut(s)	356, 905
BmsI	GCATC	4 cut(s)	67, 360, 907, 976
BmtI	GCTAGC	1 cut(s)	69
BoxI	GACNNNNGTC	1 cut(s)	823
BpiI	GAAGAC	1 cut(s)	868
Bpu1102I	GCTNAGC	1 cut(s)	780
BpuMI	CCSGG	1 cut(s)	905
BsaAI	YACGTR	1 cut(s)	709
BsaBI	GATNNNNATC	1 cut(s)	81
BsaJI	CCNNGG	4 cut(s)	191, 768, 870, 904
Bsc4I	CCNNNNNNNGG	4 cut(s)	185, 559, 871, 905
Bse1I	ACTGG	1 cut(s)	490
Bse3DI	GCAATG	1 cut(s)	774
Bse8I	GATNNNNATC	1 cut(s)	81
BseBI	CCWGG	1 cut(s)	356
BseDI	CCNNGG	4 cut(s)	191, 768, 870, 904
BseGI	GGATG	5 cut(s)	131, 351, 426, 820, 988
BseJI	GATNNNNATC	1 cut(s)	81
BseLI	CCNNNNNNNGG	4 cut(s)	185, 559, 871, 905
BseMI	GCAATG	1 cut(s)	774
BseMII	CTCAG	2 cut(s)	794, 981
BseNI	ACTGG	1 cut(s)	490
BseRI	GAGGAG	1 cut(s)	873
BseXI	GCAGC	2 cut(s)	19, 646
BsgI	GTGCAG	2 cut(s)	18, 128
BshFI	GGCC	5 cut(s)	331, 489, 767, 864, 1007
BsiSI	CCGG	1 cut(s)	904
BslFI	GGGAC	1 cut(s)	248
BslI	CCNNNNNNNGG	4 cut(s)	185, 559, 871, 905
BsmFI	GGGAC	1 cut(s)	248
BsmI	GAATGC	3 cut(s)	18, 692, 940
BsnI	GGCC	5 cut(s)	331, 489, 767, 864, 1007
Bsp143I	GATC	2 cut(s)	82, 507
Bsp1720I	GCTNAGC	1 cut(s)	780
Bsp19I	CCATGG	3 cut(s)	191, 768, 870
BspACI	CCGC	4 cut(s)	8, 209, 241, 683
BspANI	GGCC	5 cut(s)	331, 489, 767, 864, 1007
BspCNI	CTCAG	2 cut(s)	793, 982
BspLI	GGNNCC	2 cut(s)	6, 360
BspMAI	CTGCAG	1 cut(s)	254
BspMI	ACCTGC	1 cut(s)	243
BspOI	GCTAGC	1 cut(s)	69
BspPI	GGATC	2 cut(s)	77, 515
BsrDI	GCAATG	1 cut(s)	774
BsrI	ACTGG	1 cut(s)	490
BssECI	CCNNGG	4 cut(s)	191, 768, 870, 904
BssMI	GATC	2 cut(s)	82, 507
BssNAI	GTATAC	1 cut(s)	436
BssT1I	CCWWGG	3 cut(s)	191, 768, 870
Bst1107I	GTATAC	1 cut(s)	436
Bst2UI	CCWGG	1 cut(s)	356
Bst4CI	ACNGT	3 cut(s)	155, 714, 743
Bst6I	CTCTTC	3 cut(s)	29, 63, 276
BstAPI	GCANNNNNTGC	1 cut(s)	249
BstBAI	YACGTR	1 cut(s)	709
BstC8I	GCNNGC	5 cut(s)	67, 73, 266, 270, 924
BstDEI	CTNAG	2 cut(s)	780, 990
BstDSI	CCRYGG	3 cut(s)	191, 768, 870
BstF5I	GGATG	5 cut(s)	131, 351, 426, 820, 988
BstH2I	RGCGCY	1 cut(s)	72
BstHHI	GCGC	3 cut(s)	71, 222, 922
BstKTI	GATC	2 cut(s)	85, 510
BstMBI	GATC	2 cut(s)	82, 507
BstMWI	GCNNNNNNNGC	7 cut(s)	77, 208, 217, 249, 337, 380, 803
BstNI	CCWGG	1 cut(s)	356
BstNSI	RCATGY	2 cut(s)	202, 268
BstPAI	GACNNNNGTC	1 cut(s)	823
BstSCI	CCNGG	2 cut(s)	354, 903
BstSFI	CTRYAG	2 cut(s)	250, 594
BstV1I	GCAGC	2 cut(s)	19, 646
BstV2I	GAAGAC	1 cut(s)	868
BstX2I	RGATCY	1 cut(s)	507
BstXI	CCANNNNNNTGG	1 cut(s)	670
BstYI	RGATCY	1 cut(s)	507
BstZ17I	GTATAC	1 cut(s)	436
BsuRI	GGCC	5 cut(s)	331, 489, 767, 864, 1007
BtgI	CCRYGG	3 cut(s)	191, 768, 870
BtgZI	GCGATG	1 cut(s)	90
BtsCI	GGATG	5 cut(s)	131, 351, 426, 820, 988
BtsI	GCAGTG	3 cut(s)	116, 250, 259
BtsIMutI	CAGTG	4 cut(s)	116, 151, 250, 259
BveI	ACCTGC	1 cut(s)	243
Cac8I	GCNNGC	5 cut(s)	67, 73, 266, 270, 924
CaiI	CAGNNNCTG	1 cut(s)	249
CfoI	GCGC	3 cut(s)	71, 222, 922
Cfr13I	GGNCC	2 cut(s)	188, 1006
Csp6I	GTAC	3 cut(s)	196, 710, 715
CviQI	GTAC	3 cut(s)	196, 710, 715
DdeI	CTNAG	2 cut(s)	780, 990
DpnI	GATC	2 cut(s)	84, 509
DpnII	GATC	2 cut(s)	82, 507
EaeI	YGGCCR	2 cut(s)	329, 765
Eam1104I	CTCTTC	3 cut(s)	29, 63, 276
EarI	CTCTTC	3 cut(s)	29, 63, 276
Eco130I	CCWWGG	3 cut(s)	191, 768, 870
Eco147I	AGGCCT	1 cut(s)	864
Eco32I	GATATC	1 cut(s)	417
Eco47I	GGWCC	1 cut(s)	188
Eco47III	AGCGCT	1 cut(s)	70
EcoRII	CCWGG	1 cut(s)	354
EcoRV	GATATC	1 cut(s)	417
EcoT14I	CCWWGG	3 cut(s)	191, 768, 870
ErhI	CCWWGG	3 cut(s)	191, 768, 870
FalI	AAGNNNNNCTT	2 cut(s)	195, 227
FaqI	GGGAC	1 cut(s)	248
FblI	GTMKAC	1 cut(s)	435
Fnu4HI	GCNGC	3 cut(s)	33, 241, 660
FokI	GGATG	5 cut(s)	138, 338, 413, 807, 995
Fsp4HI	GCNGC	3 cut(s)	33, 241, 660
FspBI	CTAG	5 cut(s)	66, 273, 525, 578, 623
GlaI	GCGC	3 cut(s)	70, 221, 921
GluI	GCNGC	3 cut(s)	33, 241, 660
HaeII	RGCGCY	1 cut(s)	72
HaeIII	GGCC	5 cut(s)	331, 489, 767, 864, 1007
HapII	CCGG	1 cut(s)	904
HhaI	GCGC	3 cut(s)	71, 222, 922
Hin6I	GCGC	3 cut(s)	69, 220, 920
HinP1I	GCGC	3 cut(s)	69, 220, 920
HincII	GTYRAC	1 cut(s)	567
HindII	GTYRAC	1 cut(s)	567
HinfI	GANTC	4 cut(s)	49, 454, 609, 666
HpaI	GTTAAC	1 cut(s)	567
HpaII	CCGG	1 cut(s)	904
HphI	GGTGA	1 cut(s)	311
Hpy166II	GTNNAC	2 cut(s)	436, 567
Hpy188I	TCNGA	3 cut(s)	48, 87, 169
Hpy188III	TCNNGA	5 cut(s)	123, 697, 880, 931, 1012
Hpy8I	GTNNAC	2 cut(s)	436, 567
HpyAV	CCTTC	1 cut(s)	63
HpyCH4III	ACNGT	3 cut(s)	155, 714, 743
HpyCH4IV	ACGT	1 cut(s)	708
HpyF10VI	GCNNNNNNNGC	7 cut(s)	77, 208, 217, 249, 337, 380, 803
HpyF3I	CTNAG	2 cut(s)	780, 990
HpySE526I	ACGT	1 cut(s)	708
HspAI	GCGC	3 cut(s)	69, 220, 920
KspAI	GTTAAC	1 cut(s)	567
Kzo9I	GATC	2 cut(s)	82, 507
LmnI	GCTCC	2 cut(s)	10, 685
Lsp1109I	GCAGC	2 cut(s)	19, 646
LweI	GCATC	4 cut(s)	67, 360, 907, 976
MaeI	CTAG	5 cut(s)	66, 273, 525, 578, 623
MaeII	ACGT	1 cut(s)	708
MaeIII	GTNAC	4 cut(s)	245, 697, 811, 825
MalI	GATC	2 cut(s)	84, 509
MboI	GATC	2 cut(s)	82, 507
MboII	GAAGA	6 cut(s)	16, 50, 293, 579, 868, 1027
MflI	RGATCY	1 cut(s)	507
MlsI	TGGCCA	2 cut(s)	331, 767
MluCI	AATT	3 cut(s)	158, 401, 443
MluNI	TGGCCA	2 cut(s)	331, 767
MlyI	GAGTC	1 cut(s)	675
MmeI	TCCRAC	1 cut(s)	392
MnlI	CCTC	8 cut(s)	38, 271, 459, 649, 851, 854, 960, 1019
Mox20I	TGGCCA	2 cut(s)	331, 767
MscI	TGGCCA	2 cut(s)	331, 767
MseI	TTAA	2 cut(s)	566, 642
MslI	CAYNNNNRTG	3 cut(s)	501, 755, 767
Msp20I	TGGCCA	2 cut(s)	331, 767
MspA1I	CMGCKG	1 cut(s)	685
MspI	CCGG	1 cut(s)	904
MspR9I	CCNGG	2 cut(s)	356, 905
Mva1269I	GAATGC	3 cut(s)	18, 692, 940
MvaI	CCWGG	1 cut(s)	356
MwoI	GCNNNNNNNGC	7 cut(s)	77, 208, 217, 249, 337, 380, 803
NciI	CCSGG	1 cut(s)	905
NcoI	CCATGG	3 cut(s)	191, 768, 870
NdeII	GATC	2 cut(s)	82, 507
NheI	GCTAGC	1 cut(s)	65
NlaIV	GGNNCC	2 cut(s)	6, 360
NmeAIII	GCCGAG	1 cut(s)	578
NmuCI	GTSAC	3 cut(s)	245, 697, 825
NspI	RCATGY	2 cut(s)	202, 268
PaeI	GCATGC	1 cut(s)	268
PceI	AGGCCT	1 cut(s)	864
PctI	GAATGC	3 cut(s)	18, 692, 940
PfeI	GAWTC	3 cut(s)	49, 454, 609
PfoI	TCCNGGA	1 cut(s)	354
PkrI	GCNGC	3 cut(s)	34, 242, 661
PleI	GAGTC	1 cut(s)	674
PpsI	GAGTC	1 cut(s)	674
Ppu21I	YACGTR	1 cut(s)	709
PshAI	GACNNNNGTC	1 cut(s)	823
Psp6I	CCWGG	1 cut(s)	354
PspGI	CCWGG	1 cut(s)	354
PspN4I	GGNNCC	2 cut(s)	6, 360
PspPI	GGNCC	2 cut(s)	188, 1006
PstI	CTGCAG	1 cut(s)	254
PstNI	CAGNNNCTG	1 cut(s)	249
PsuI	RGATCY	1 cut(s)	507
RsaI	GTAC	3 cut(s)	197, 711, 716
RsaNI	GTAC	3 cut(s)	196, 710, 715
RseI	CAYNNNNRTG	3 cut(s)	501, 755, 767
SaqAI	TTAA	2 cut(s)	566, 642
SatI	GCNGC	3 cut(s)	33, 241, 660
Sau3AI	GATC	2 cut(s)	82, 507
Sau96I	GGNCC	2 cut(s)	188, 1006
SchI	GAGTC	1 cut(s)	675
ScrFI	CCNGG	2 cut(s)	356, 905
SfaNI	GCATC	4 cut(s)	67, 360, 907, 976
SfcI	CTRYAG	2 cut(s)	250, 594
SinI	GGWCC	1 cut(s)	188
SmiMI	CAYNNNNRTG	3 cut(s)	501, 755, 767
SphI	GCATGC	1 cut(s)	268
Sse9I	AATT	3 cut(s)	158, 401, 443
SseBI	AGGCCT	1 cut(s)	864
SsiI	CCGC	4 cut(s)	8, 209, 241, 683
SspMI	CTAG	5 cut(s)	66, 273, 525, 578, 623
StuI	AGGCCT	1 cut(s)	864
StyD4I	CCNGG	2 cut(s)	354, 903
StyI	CCWWGG	3 cut(s)	191, 768, 870
TaaI	ACNGT	3 cut(s)	155, 714, 743
TaiI	ACGT	1 cut(s)	711
TaqI	TCGA	3 cut(s)	634, 817, 879
TasI	AATT	3 cut(s)	158, 401, 443
TauI	GCSGC	1 cut(s)	243
TfiI	GAWTC	3 cut(s)	49, 454, 609
Tru1I	TTAA	2 cut(s)	566, 642
Tru9I	TTAA	2 cut(s)	566, 642
TscAI	CASTG	4 cut(s)	116, 158, 250, 266
TseFI	GTSAC	3 cut(s)	245, 697, 825
TseI	GCWGC	2 cut(s)	32, 659
Tsp45I	GTSAC	3 cut(s)	245, 697, 825
TspDTI	ATGAA	5 cut(s)	153, 395, 415, 533, 767
TspGWI	ACGGA	1 cut(s)	813
TspRI	CASTG	4 cut(s)	116, 158, 250, 266
VpaK11BI	GGWCC	1 cut(s)	188
XapI	RAATTY	1 cut(s)	158
XceI	RCATGY	2 cut(s)	202, 268
XmiI	GTMKAC	1 cut(s)	435
XspI	CTAG	5 cut(s)	66, 273, 525, 578, 623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.