Rh1DG403900

post-GPI attachment to proteins factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0008262
Physical Location & Seq
Forward (+)
62336024 .. 62339697
3674 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG403900.1

Sequence Viewer

Length: 765 bp
ATGGCCCCCCGCCTCCGTTGCATTCTCTTCCTCGCCGCACTCTCCGCCGCTCTGCTTCCGCGGCTCCTCGCCAGCTCCGGCGACGCCGATCCGATTTACCGGTCTTGCGTGGAGCAGTGTCAAAAATCTGGATGTGTAGGGGAGAAATGCTTTCAGCACTGTAAATTTTCATCTGATGGGAAACCTATTGATGGCCCTTGGTATATCGAAGAACCTCTCTATTTGCGCTGGAAGCAATGGGACTGCCAAACTGACTGTAGGTACCACTGCATGCTTGCGAGGGAGGAGGAAAGGGGGAGACTTGGTGACAAGCCTGTAAAGTATCATGGAAAATGGCCATTTTGGCGTGTTTATGGCATTCAGGAACCTGTTTCCGTTGCTCTCTCTGCTCTCAATCTTGCCATGCAATTTCAAGGTTGGATTTCTTTCTTTATCCTCGTATACTACAAGTTGCCTCTGAGGCCAACTAGGAAGACTTACTATGCATATACTGGCGTGTGGCATATCTGGGGGATCTTATCAATGAATGCTTGGTTTTGGAGCGGTGTATTTCACAGCCGGGATGTGGAGTTGACAGAGAAGCTAGATATTTCTTCTGCTGTCGCATTACTTGGTTTTTCCCTCATTGTAGCAATACTGAGAGCTTTCAATGTCAGAGATGAGGCCGCCAGGGTCATGGTCTGTGCTCCAGTGATTGCATTTGTGACCACACACATACTGTACCTGAACTTCTATAAACTTGATTGCGGTAATACATTTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Per1

Protein Analysis

254

Amino Acids

29.29

Weight (kDa)

8.72

Isoelectric Point (pI)

40.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Per1 PF04080 72 - 249 1.9e-61 Per1-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 261
AccB1I GGYRCC 1 cut(s) 261
AccBSI CCGCTC 2 cut(s) 50, 543
AccI GTMKAC 1 cut(s) 441
AccII CGCG 1 cut(s) 61
AciI CCGC 9 cut(s) 10, 36, 45, 48, 59, 61, 543, 666, 747
AclWI GGATC 2 cut(s) 83, 521
AcoI YGGCCR 1 cut(s) 335
AcsI RAATTY 1 cut(s) 164
AcyI GRCGYC 1 cut(s) 84
AfaI GTAC 2 cut(s) 263, 722
AfiI CCNNNNNNNGG 2 cut(s) 191, 565
AgeI ACCGGT 1 cut(s) 99
AgsI TTSAA 2 cut(s) 413, 649
AjnI CCWGG 1 cut(s) 668
AluBI AGCT 3 cut(s) 75, 583, 644
AluI AGCT 3 cut(s) 75, 583, 644
Alw21I GWGCWC 1 cut(s) 688
Alw26I GTCTC 1 cut(s) 292
AlwI GGATC 2 cut(s) 83, 521
AoxI GGCC 5 cut(s) 3, 193, 335, 461, 663
ApoI RAATTY 1 cut(s) 164
AsiGI ACCGGT 1 cut(s) 99
Asp718I GGTACC 1 cut(s) 261
AspLEI GCGC 1 cut(s) 228
AspS9I GGNCC 2 cut(s) 4, 194
AsuC2I CCSGG 1 cut(s) 560
AsuHPI GGTGA 1 cut(s) 317
BalI TGGCCA 1 cut(s) 337
BanI GGYRCC 1 cut(s) 261
BarI GAAGNNNNNNTAC 2 cut(s) 713, 745
BbsI GAAGAC 1 cut(s) 479
Bbv12I GWGCWC 1 cut(s) 688
BccI CCATC 2 cut(s) 170, 185
BciT130I CCWGG 1 cut(s) 670
BcnI CCSGG 1 cut(s) 560
BcoDI GTCTC 1 cut(s) 292
BfaI CTAG 3 cut(s) 468, 584, 763
BfmI CTRYAG 1 cut(s) 256
BglI GCCNNNNNGGC 2 cut(s) 343, 460
BisI GCNGC 4 cut(s) 36, 48, 62, 666
BlsI GCNGC 4 cut(s) 37, 49, 63, 667
Bme1390I CCNGG 2 cut(s) 560, 670
BmgT120I GGNCC 2 cut(s) 4, 194
BmiI GGNNCC 4 cut(s) 6, 65, 263, 366
BmrFI CCNGG 2 cut(s) 560, 670
BpiI GAAGAC 1 cut(s) 479
BpmI CTGGAG 1 cut(s) 672
BpuMI CCSGG 1 cut(s) 560
BsaHI GRCGYC 1 cut(s) 84
BsaJI CCNNGG 3 cut(s) 59, 197, 669
BsaWI WCCGGW 1 cut(s) 99
BsaXI ACNNNNNCTCC 2 cut(s) 289, 319
Bsc4I CCNNNNNNNGG 2 cut(s) 191, 565
Bse118I RCCGGY 1 cut(s) 99
Bse1I ACTGG 2 cut(s) 496, 689
Bse3DI GCAATG 1 cut(s) 242
BseBI CCWGG 1 cut(s) 670
BseDI CCNNGG 3 cut(s) 59, 197, 669
BseGI GGATG 2 cut(s) 137, 568
BseLI CCNNNNNNNGG 2 cut(s) 191, 565
BseMI GCAATG 1 cut(s) 242
BseMII CTCAG 2 cut(s) 449, 629
BseNI ACTGG 2 cut(s) 496, 689
BseRI GAGGAG 2 cut(s) 56, 299
Bsh1236I CGCG 1 cut(s) 61
BshFI GGCC 5 cut(s) 5, 195, 337, 463, 665
BshNI GGYRCC 1 cut(s) 261
BshTI ACCGGT 1 cut(s) 99
BsiHKAI GWGCWC 1 cut(s) 688
BsiSI CCGG 3 cut(s) 78, 100, 559
BslFI GGGAC 1 cut(s) 254
BslI CCNNNNNNNGG 2 cut(s) 191, 565
BsmAI GTCTC 1 cut(s) 292
BsmFI GGGAC 1 cut(s) 254
BsmI GAATGC 3 cut(s) 21, 357, 532
BsnI GGCC 5 cut(s) 5, 195, 337, 463, 665
Bsp1286I GDGCHC 1 cut(s) 688
Bsp143I GATC 2 cut(s) 88, 513
BspACI CCGC 9 cut(s) 10, 36, 45, 48, 59, 61, 543, 666, 747
BspANI GGCC 5 cut(s) 5, 195, 337, 463, 665
BspCNI CTCAG 2 cut(s) 450, 630
BspFNI CGCG 1 cut(s) 61
BspLI GGNNCC 4 cut(s) 6, 65, 263, 366
BspPI GGATC 2 cut(s) 83, 521
BspT107I GGYRCC 1 cut(s) 261
BsrBI CCGCTC 2 cut(s) 50, 543
BsrDI GCAATG 1 cut(s) 242
BsrFI RCCGGY 1 cut(s) 99
BsrI ACTGG 2 cut(s) 496, 689
BssAI RCCGGY 1 cut(s) 99
BssECI CCNNGG 3 cut(s) 59, 197, 669
BssMI GATC 2 cut(s) 88, 513
BssNAI GTATAC 1 cut(s) 442
BssNI GRCGYC 1 cut(s) 84
BssT1I CCWWGG 1 cut(s) 197
Bst1107I GTATAC 1 cut(s) 442
Bst2UI CCWGG 1 cut(s) 670
Bst4CI ACNGT 3 cut(s) 161, 257, 720
Bst6I CTCTTC 1 cut(s) 32
BstACI GRCGYC 1 cut(s) 84
BstC8I GCNNGC 3 cut(s) 73, 272, 276
BstDEI CTNAG 2 cut(s) 458, 638
BstDSI CCRYGG 1 cut(s) 59
BstF5I GGATG 2 cut(s) 137, 568
BstFNI CGCG 1 cut(s) 61
BstHHI GCGC 1 cut(s) 228
BstKTI GATC 2 cut(s) 91, 516
BstMAI GTCTC 1 cut(s) 292
BstMBI GATC 2 cut(s) 88, 513
BstMWI GCNNNNNNNGC 7 cut(s) 18, 44, 61, 232, 343, 386, 460
BstNI CCWGG 1 cut(s) 670
BstNSI RCATGY 1 cut(s) 274
BstSCI CCNGG 2 cut(s) 558, 668
BstSFI CTRYAG 1 cut(s) 256
BstUI CGCG 1 cut(s) 61
BstV2I GAAGAC 1 cut(s) 479
BstX2I RGATCY 1 cut(s) 513
BstXI CCANNNNNNTGG 1 cut(s) 676
BstYI RGATCY 1 cut(s) 513
BstZ17I GTATAC 1 cut(s) 442
BsuRI GGCC 5 cut(s) 5, 195, 337, 463, 665
BtgI CCRYGG 1 cut(s) 59
BtsCI GGATG 2 cut(s) 137, 568
BtsI GCAGTG 2 cut(s) 122, 265
BtsIMutI CAGTG 4 cut(s) 122, 157, 265, 696
Cac8I GCNNGC 3 cut(s) 73, 272, 276
CfoI GCGC 1 cut(s) 228
Cfr10I RCCGGY 1 cut(s) 99
Cfr13I GGNCC 2 cut(s) 4, 194
Cfr42I CCGCGG 1 cut(s) 62
CseI GACGC 1 cut(s) 92
Csp6I GTAC 2 cut(s) 262, 721
CspAI ACCGGT 1 cut(s) 99
CviAII CATG 4 cut(s) 271, 326, 403, 676
CviQI GTAC 2 cut(s) 262, 721
DdeI CTNAG 2 cut(s) 458, 638
DpnI GATC 2 cut(s) 90, 515
DpnII GATC 2 cut(s) 88, 513
EaeI YGGCCR 1 cut(s) 335
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
EciI GGCGGA 1 cut(s) 34
Eco130I CCWWGG 1 cut(s) 197
EcoRII CCWGG 1 cut(s) 668
EcoT14I CCWWGG 1 cut(s) 197
EcoT22I ATGCAT 1 cut(s) 487
ErhI CCWWGG 1 cut(s) 197
FaeI CATG 4 cut(s) 274, 329, 406, 679
FaqI GGGAC 1 cut(s) 254
FatI CATG 4 cut(s) 270, 325, 402, 675
FauI CCCGC 1 cut(s) 17
FblI GTMKAC 1 cut(s) 441
Fnu4HI GCNGC 4 cut(s) 36, 48, 62, 666
FokI GGATG 2 cut(s) 144, 575
Fsp4HI GCNGC 4 cut(s) 36, 48, 62, 666
FspBI CTAG 3 cut(s) 468, 584, 763
GlaI GCGC 1 cut(s) 227
GluI GCNGC 4 cut(s) 36, 48, 62, 666
GsuI CTGGAG 1 cut(s) 672
HaeIII GGCC 5 cut(s) 5, 195, 337, 463, 665
HapII CCGG 3 cut(s) 78, 100, 559
HgaI GACGC 1 cut(s) 92
HhaI GCGC 1 cut(s) 228
Hin1I GRCGYC 1 cut(s) 84
Hin1II CATG 4 cut(s) 274, 329, 406, 679
Hin6I GCGC 1 cut(s) 226
HinP1I GCGC 1 cut(s) 226
HincII GTYRAC 1 cut(s) 573
HindII GTYRAC 1 cut(s) 573
HpaII CCGG 3 cut(s) 78, 100, 559
HphI GGTGA 1 cut(s) 317
Hpy166II GTNNAC 2 cut(s) 442, 573
Hpy188I TCNGA 4 cut(s) 93, 175, 459, 656
Hpy188III TCNNGA 2 cut(s) 129, 362
Hpy8I GTNNAC 2 cut(s) 442, 573
Hpy99I CGWCG 1 cut(s) 86
HpyCH4III ACNGT 3 cut(s) 161, 257, 720
HpyCH4V TGCA 5 cut(s) 21, 270, 406, 485, 698
HpyF10VI GCNNNNNNNGC 7 cut(s) 18, 44, 61, 232, 343, 386, 460
HpyF3I CTNAG 2 cut(s) 458, 638
Hsp92I GRCGYC 1 cut(s) 84
Hsp92II CATG 4 cut(s) 274, 329, 406, 679
HspAI GCGC 1 cut(s) 226
KpnI GGTACC 1 cut(s) 265
KspI CCGCGG 1 cut(s) 62
Kzo9I GATC 2 cut(s) 88, 513
LmnI GCTCC 5 cut(s) 69, 80, 112, 540, 691
MaeI CTAG 3 cut(s) 468, 584, 763
MaeIII GTNAC 2 cut(s) 305, 703
MalI GATC 2 cut(s) 90, 515
MbiI CCGCTC 2 cut(s) 50, 543
MboI GATC 2 cut(s) 88, 513
MboII GAAGA 4 cut(s) 19, 221, 484, 585
MflI RGATCY 1 cut(s) 513
MhlI GDGCHC 1 cut(s) 688
MlsI TGGCCA 1 cut(s) 337
MluCI AATT 2 cut(s) 164, 407
MluNI TGGCCA 1 cut(s) 337
MmeI TCCRAC 1 cut(s) 398
Mox20I TGGCCA 1 cut(s) 337
Mph1103I ATGCAT 1 cut(s) 487
MscI TGGCCA 1 cut(s) 337
Msp20I TGGCCA 1 cut(s) 337
MspA1I CMGCKG 1 cut(s) 61
MspI CCGG 3 cut(s) 78, 100, 559
MspR9I CCNGG 2 cut(s) 560, 670
Mva1269I GAATGC 3 cut(s) 21, 357, 532
MvaI CCWGG 1 cut(s) 670
MvnI CGCG 1 cut(s) 61
MwoI GCNNNNNNNGC 7 cut(s) 18, 44, 61, 232, 343, 386, 460
NciI CCSGG 1 cut(s) 560
NdeII GATC 2 cut(s) 88, 513
NlaIII CATG 4 cut(s) 274, 329, 406, 679
NlaIV GGNNCC 4 cut(s) 6, 65, 263, 366
NmuCI GTSAC 2 cut(s) 305, 703
NsiI ATGCAT 1 cut(s) 487
NspI RCATGY 1 cut(s) 274
PaeI GCATGC 1 cut(s) 274
PctI GAATGC 3 cut(s) 21, 357, 532
PinAI ACCGGT 1 cut(s) 99
PkrI GCNGC 4 cut(s) 37, 49, 63, 667
Psp6I CCWGG 1 cut(s) 668
PspGI CCWGG 1 cut(s) 668
PspN4I GGNNCC 4 cut(s) 6, 65, 263, 366
PspPI GGNCC 2 cut(s) 4, 194
PsuI RGATCY 1 cut(s) 513
RsaI GTAC 2 cut(s) 263, 722
RsaNI GTAC 2 cut(s) 262, 721
SacII CCGCGG 1 cut(s) 62
SatI GCNGC 4 cut(s) 36, 48, 62, 666
Sau3AI GATC 2 cut(s) 88, 513
Sau96I GGNCC 2 cut(s) 4, 194
ScrFI CCNGG 2 cut(s) 560, 670
SduI GDGCHC 1 cut(s) 688
SetI ASST 9 cut(s) 77, 187, 217, 263, 370, 418, 585, 646, 726
SfcI CTRYAG 1 cut(s) 256
Sfr303I CCGCGG 1 cut(s) 62
SgrBI CCGCGG 1 cut(s) 62
SphI GCATGC 1 cut(s) 274
Sse9I AATT 2 cut(s) 164, 407
SsiI CCGC 9 cut(s) 10, 36, 45, 48, 59, 61, 543, 666, 747
SspMI CTAG 3 cut(s) 468, 584, 763
StyD4I CCNGG 2 cut(s) 558, 668
StyI CCWWGG 1 cut(s) 197
TaaI ACNGT 3 cut(s) 161, 257, 720
TaqI TCGA 1 cut(s) 207
TasI AATT 2 cut(s) 164, 407
TauI GCSGC 4 cut(s) 38, 50, 64, 668
TscAI CASTG 4 cut(s) 122, 164, 272, 696
TseFI GTSAC 2 cut(s) 305, 703
Tsp45I GTSAC 2 cut(s) 305, 703
TspDTI ATGAA 2 cut(s) 159, 539
TspGWI ACGGA 2 cut(s) 5, 364
TspRI CASTG 4 cut(s) 122, 164, 272, 696
XapI RAATTY 1 cut(s) 164
XceI RCATGY 1 cut(s) 274
XmiI GTMKAC 1 cut(s) 441
XspI CTAG 3 cut(s) 468, 584, 763
Zsp2I ATGCAT 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.