FvH4_7g28930

post-GPI attachment to proteins factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0008262
Physical Location & Seq
Forward (+)
21359821 .. 21363481
3661 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g28930.t1

Sequence Viewer

Length: 1035 bp
ATGGCTCGCCGGCTCCGTTGCATTCTCTTCCTCGCCGCGCTCTCCGCCGCTCTGCTTCCCGCGCTTCTCGCCAGCTCCGGCGACTCCGATCCGGTTTACCGGTCTTGCGTGGAGCAGTGTCAAAAGTCTGGATGCGTGGGGGAAAAATGTTTTCAGCACTGTAAATTTTCATCTGATGGGAAACCTATTGATGGCCCTTGGTATATTGAAGAACCTCTCTATCTGCGCTGGAAGCAATGGGACTGTCAAACTGACTGTAGGTACCACTGCATGCTTGCGAGGGAGGAGGAAAGAAAGAAACTCGGTGACAAGCCTGTAAAGTATCATGGAAAATGGCCATTTAACCGTGTCTATGGCATTCAGGAACCTGTGTCCGTTGCTCTTTCTGCTCTCAATCTTGCCATGCAATTTCAAGGTTGGATTTCATTCTTTATCCTTGTATACTACAAGTTGCCTCTGAGGCCAACTAAGAAGACTTACTACGAATATACTGGCGTGTGGCATATCTGGGGGATCTTATCAATGAATTCTTGGTTTTGGAGCGCTGTATTTCAGAGCCGGGATGTGGAGTTGACAGAGAAGCTAGATATATCTTCTGCTGTCGCATTACTTGGTTTTTCCCTCATTCTAGCCATACTGAGAGCTTTCAATGTCAGAGATGAGGCTGCCAGGGTCATGGTCTGCGCTCCAGTGATAGCATTTGTGACAACACACATACTGTACCTGAACTTCTATAAACTTGATTGTGGTCTGAATATGAAAGTTTGTATAGCCATGGGCGTTCTTCAGCTTCTTACATGGGCTATTTGGGCTGGTACTACCCGTCATCCGTCACGCTGGAAGTTGTGGGTGGTCGTTGCAGGAGGAAGCATTACCATGCTCTTGGAGATATATGACTTCCCACCGTACCGGGGATTTATAGATGCTCATGCTATTTCTAACGCAATCACCATCCCTCTCACATACCTTTGGTGGAGTTTTGTCAAGGATGATGCCGAGTTTATGACAGCAGCTCTCCTGAAGAAAGCAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Per1

Protein Analysis

345

Amino Acids

39.46

Weight (kDa)

8.9

Isoelectric Point (pI)

41.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Per1 PF04080 72 - 332 4.6e-92 Per1-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 261
AccB1I GGYRCC 1 cut(s) 261
AccBSI CCGCTC 1 cut(s) 50
AccI GTMKAC 1 cut(s) 441
AccII CGCG 2 cut(s) 38, 62
AciI CCGC 4 cut(s) 36, 45, 48, 60
AclWI GGATC 2 cut(s) 83, 521
AcoI YGGCCR 1 cut(s) 335
AcsI RAATTY 2 cut(s) 164, 526
AcuI CTGAAG 1 cut(s) 770
AfaI GTAC 4 cut(s) 263, 722, 817, 908
AfeI AGCGCT 1 cut(s) 544
AfiI CCNNNNNNNGG 3 cut(s) 191, 565, 911
AgeI ACCGGT 1 cut(s) 99
AgsI TTSAA 3 cut(s) 209, 413, 649
AjnI CCWGG 1 cut(s) 668
AluBI AGCT 5 cut(s) 75, 583, 644, 790, 1013
AluI AGCT 5 cut(s) 75, 583, 644, 790, 1013
AlwI GGATC 2 cut(s) 83, 521
Aor51HI AGCGCT 1 cut(s) 544
AoxI GGCC 3 cut(s) 193, 335, 461
ApeKI GCWGC 2 cut(s) 665, 1010
ApoI RAATTY 2 cut(s) 164, 526
AsiGI ACCGGT 1 cut(s) 99
Asp718I GGTACC 1 cut(s) 261
AspLEI GCGC 5 cut(s) 40, 64, 228, 545, 686
AspS9I GGNCC 1 cut(s) 194
AsuC2I CCSGG 2 cut(s) 560, 911
AsuHPI GGTGA 2 cut(s) 317, 940
BalI TGGCCA 1 cut(s) 337
BanI GGYRCC 1 cut(s) 261
BarI GAAGNNNNNNTAC 4 cut(s) 464, 496, 713, 745
BbsI GAAGAC 1 cut(s) 479
BbvI GCAGC 2 cut(s) 652, 1022
BccI CCATC 3 cut(s) 170, 185, 959
BciT130I CCWGG 1 cut(s) 670
BcnI CCSGG 2 cut(s) 560, 911
BfaI CTAG 2 cut(s) 584, 629
BfmI CTRYAG 1 cut(s) 256
BfoI RGCGCY 1 cut(s) 546
BglI GCCNNNNNGGC 1 cut(s) 460
BisI GCNGC 4 cut(s) 36, 48, 666, 1011
BlsI GCNGC 4 cut(s) 37, 49, 667, 1012
Bme1390I CCNGG 3 cut(s) 560, 670, 911
BmgT120I GGNCC 1 cut(s) 194
BmiI GGNNCC 3 cut(s) 14, 263, 366
BmrFI CCNGG 3 cut(s) 560, 670, 911
BmsI GCATC 3 cut(s) 122, 913, 982
BpiI GAAGAC 1 cut(s) 479
BpmI CTGGAG 1 cut(s) 672
BpuMI CCSGG 2 cut(s) 560, 911
BsaJI CCNNGG 4 cut(s) 197, 669, 774, 910
BsaWI WCCGGW 2 cut(s) 91, 99
Bsc4I CCNNNNNNNGG 3 cut(s) 191, 565, 911
Bse118I RCCGGY 2 cut(s) 9, 99
Bse1I ACTGG 2 cut(s) 496, 689
Bse3DI GCAATG 1 cut(s) 242
BseBI CCWGG 1 cut(s) 670
BseDI CCNNGG 4 cut(s) 197, 669, 774, 910
BseGI GGATG 5 cut(s) 137, 568, 826, 951, 994
BseLI CCNNNNNNNGG 3 cut(s) 191, 565, 911
BseMI GCAATG 1 cut(s) 242
BseMII CTCAG 2 cut(s) 449, 629
BseNI ACTGG 2 cut(s) 496, 689
BseRI GAGGAG 1 cut(s) 299
BseXI GCAGC 2 cut(s) 652, 1022
Bsh1236I CGCG 2 cut(s) 38, 62
BshFI GGCC 3 cut(s) 195, 337, 463
BshNI GGYRCC 1 cut(s) 261
BshTI ACCGGT 1 cut(s) 99
BsiSI CCGG 6 cut(s) 10, 78, 92, 100, 559, 910
BslFI GGGAC 1 cut(s) 254
BslI CCNNNNNNNGG 3 cut(s) 191, 565, 911
BsmFI GGGAC 1 cut(s) 254
BsmI GAATGC 2 cut(s) 21, 357
BsnI GGCC 3 cut(s) 195, 337, 463
Bsp143I GATC 2 cut(s) 88, 513
Bsp19I CCATGG 1 cut(s) 774
BspACI CCGC 4 cut(s) 36, 45, 48, 60
BspANI GGCC 3 cut(s) 195, 337, 463
BspCNI CTCAG 2 cut(s) 450, 630
BspFNI CGCG 2 cut(s) 38, 62
BspLI GGNNCC 3 cut(s) 14, 263, 366
BspPI GGATC 2 cut(s) 83, 521
BspT107I GGYRCC 1 cut(s) 261
BsrBI CCGCTC 1 cut(s) 50
BsrDI GCAATG 1 cut(s) 242
BsrFI RCCGGY 2 cut(s) 9, 99
BsrI ACTGG 2 cut(s) 496, 689
BssAI RCCGGY 2 cut(s) 9, 99
BssECI CCNNGG 4 cut(s) 197, 669, 774, 910
BssMI GATC 2 cut(s) 88, 513
BssNAI GTATAC 1 cut(s) 442
BssT1I CCWWGG 2 cut(s) 197, 774
Bst1107I GTATAC 1 cut(s) 442
Bst2UI CCWGG 1 cut(s) 670
Bst4CI ACNGT 6 cut(s) 161, 245, 257, 347, 720, 906
Bst6I CTCTTC 1 cut(s) 32
BstC8I GCNNGC 5 cut(s) 7, 11, 73, 272, 276
BstDEI CTNAG 3 cut(s) 458, 468, 638
BstDSI CCRYGG 1 cut(s) 774
BstF5I GGATG 5 cut(s) 137, 568, 826, 951, 994
BstFNI CGCG 2 cut(s) 38, 62
BstH2I RGCGCY 1 cut(s) 546
BstHHI GCGC 5 cut(s) 40, 64, 228, 545, 686
BstKTI GATC 2 cut(s) 91, 516
BstMBI GATC 2 cut(s) 88, 513
BstMWI GCNNNNNNNGC 7 cut(s) 44, 61, 68, 232, 386, 460, 809
BstNI CCWGG 1 cut(s) 670
BstNSI RCATGY 1 cut(s) 274
BstSCI CCNGG 3 cut(s) 558, 668, 909
BstSFI CTRYAG 1 cut(s) 256
BstUI CGCG 2 cut(s) 38, 62
BstV1I GCAGC 2 cut(s) 652, 1022
BstV2I GAAGAC 1 cut(s) 479
BstX2I RGATCY 1 cut(s) 513
BstXI CCANNNNNNTGG 2 cut(s) 676, 883
BstYI RGATCY 1 cut(s) 513
BstZ17I GTATAC 1 cut(s) 442
BsuRI GGCC 3 cut(s) 195, 337, 463
BtgI CCRYGG 1 cut(s) 774
BtsCI GGATG 5 cut(s) 137, 568, 826, 951, 994
BtsI GCAGTG 2 cut(s) 122, 265
BtsIMutI CAGTG 4 cut(s) 122, 157, 265, 696
Cac8I GCNNGC 5 cut(s) 7, 11, 73, 272, 276
CfoI GCGC 5 cut(s) 40, 64, 228, 545, 686
Cfr10I RCCGGY 2 cut(s) 9, 99
Cfr13I GGNCC 1 cut(s) 194
Csp6I GTAC 4 cut(s) 262, 721, 816, 907
CspAI ACCGGT 1 cut(s) 99
CviAII CATG 8 cut(s) 271, 326, 403, 676, 775, 798, 877, 929
CviQI GTAC 4 cut(s) 262, 721, 816, 907
DdeI CTNAG 3 cut(s) 458, 468, 638
DpnI GATC 2 cut(s) 90, 515
DpnII GATC 2 cut(s) 88, 513
EaeI YGGCCR 1 cut(s) 335
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
EciI GGCGGA 1 cut(s) 34
Eco130I CCWWGG 2 cut(s) 197, 774
Eco47III AGCGCT 1 cut(s) 544
Eco57I CTGAAG 1 cut(s) 770
EcoRI GAATTC 1 cut(s) 526
EcoRII CCWGG 1 cut(s) 668
EcoT14I CCWWGG 2 cut(s) 197, 774
ErhI CCWWGG 2 cut(s) 197, 774
FaeI CATG 8 cut(s) 274, 329, 406, 679, 778, 801, 880, 932
FaqI GGGAC 1 cut(s) 254
FatI CATG 8 cut(s) 270, 325, 402, 675, 774, 797, 876, 928
FauI CCCGC 1 cut(s) 67
FblI GTMKAC 1 cut(s) 441
Fnu4HI GCNGC 4 cut(s) 36, 48, 666, 1011
FokI GGATG 5 cut(s) 144, 575, 813, 938, 1001
Fsp4HI GCNGC 4 cut(s) 36, 48, 666, 1011
FspBI CTAG 2 cut(s) 584, 629
GlaI GCGC 5 cut(s) 39, 63, 227, 544, 685
GluI GCNGC 4 cut(s) 36, 48, 666, 1011
GsuI CTGGAG 1 cut(s) 672
HaeII RGCGCY 1 cut(s) 546
HaeIII GGCC 3 cut(s) 195, 337, 463
HapII CCGG 6 cut(s) 10, 78, 92, 100, 559, 910
HhaI GCGC 5 cut(s) 40, 64, 228, 545, 686
Hin1II CATG 8 cut(s) 274, 329, 406, 679, 778, 801, 880, 932
Hin6I GCGC 5 cut(s) 38, 62, 226, 543, 684
HinP1I GCGC 5 cut(s) 38, 62, 226, 543, 684
HincII GTYRAC 1 cut(s) 573
HindII GTYRAC 1 cut(s) 573
HinfI GANTC 1 cut(s) 83
HpaII CCGG 6 cut(s) 10, 78, 92, 100, 559, 910
HphI GGTGA 2 cut(s) 317, 940
Hpy166II GTNNAC 3 cut(s) 97, 442, 573
Hpy188I TCNGA 6 cut(s) 88, 175, 459, 555, 656, 753
Hpy188III TCNNGA 3 cut(s) 129, 362, 1018
Hpy8I GTNNAC 3 cut(s) 97, 442, 573
HpyCH4III ACNGT 6 cut(s) 161, 245, 257, 347, 720, 906
HpyCH4V TGCA 4 cut(s) 21, 270, 406, 860
HpyF10VI GCNNNNNNNGC 7 cut(s) 44, 61, 68, 232, 386, 460, 809
HpyF3I CTNAG 3 cut(s) 458, 468, 638
Hsp92II CATG 8 cut(s) 274, 329, 406, 679, 778, 801, 880, 932
HspAI GCGC 5 cut(s) 38, 62, 226, 543, 684
KpnI GGTACC 1 cut(s) 265
KroI GCCGGC 1 cut(s) 9
KroNI GCCGGC 1 cut(s) 11
Kzo9I GATC 2 cut(s) 88, 513
LmnI GCTCC 5 cut(s) 18, 80, 112, 540, 691
Lsp1109I GCAGC 2 cut(s) 652, 1022
LweI GCATC 3 cut(s) 122, 913, 982
MaeI CTAG 2 cut(s) 584, 629
MaeIII GTNAC 3 cut(s) 305, 703, 831
MalI GATC 2 cut(s) 90, 515
MbiI CCGCTC 1 cut(s) 50
MboI GATC 2 cut(s) 88, 513
MboII GAAGA 6 cut(s) 19, 221, 484, 585, 776, 1033
MflI RGATCY 1 cut(s) 513
MlsI TGGCCA 1 cut(s) 337
MluCI AATT 3 cut(s) 164, 407, 526
MluNI TGGCCA 1 cut(s) 337
MlyI GAGTC 1 cut(s) 77
MmeI TCCRAC 1 cut(s) 398
Mox20I TGGCCA 1 cut(s) 337
MroNI GCCGGC 1 cut(s) 9
MscI TGGCCA 1 cut(s) 337
MseI TTAA 1 cut(s) 342
MslI CAYNNNNRTG 1 cut(s) 875
Msp20I TGGCCA 1 cut(s) 337
MspI CCGG 6 cut(s) 10, 78, 92, 100, 559, 910
MspR9I CCNGG 3 cut(s) 560, 670, 911
Mva1269I GAATGC 2 cut(s) 21, 357
MvaI CCWGG 1 cut(s) 670
MvnI CGCG 2 cut(s) 38, 62
MwoI GCNNNNNNNGC 7 cut(s) 44, 61, 68, 232, 386, 460, 809
NaeI GCCGGC 1 cut(s) 11
NciI CCSGG 2 cut(s) 560, 911
NcoI CCATGG 1 cut(s) 774
NdeII GATC 2 cut(s) 88, 513
NgoMIV GCCGGC 1 cut(s) 9
NlaIII CATG 8 cut(s) 274, 329, 406, 679, 778, 801, 880, 932
NlaIV GGNNCC 3 cut(s) 14, 263, 366
NmeAIII GCCGAG 1 cut(s) 1021
NmuCI GTSAC 3 cut(s) 305, 703, 831
NspI RCATGY 1 cut(s) 274
PaeI GCATGC 1 cut(s) 274
PcsI WCGNNNNNNNCGW 1 cut(s) 13
PctI GAATGC 2 cut(s) 21, 357
PdiI GCCGGC 1 cut(s) 11
PinAI ACCGGT 1 cut(s) 99
PkrI GCNGC 4 cut(s) 37, 49, 667, 1012
PleI GAGTC 1 cut(s) 77
PpsI GAGTC 1 cut(s) 77
Psp6I CCWGG 1 cut(s) 668
PspGI CCWGG 1 cut(s) 668
PspN4I GGNNCC 3 cut(s) 14, 263, 366
PspPI GGNCC 1 cut(s) 194
PsuI RGATCY 1 cut(s) 513
RsaI GTAC 4 cut(s) 263, 722, 817, 908
RsaNI GTAC 4 cut(s) 262, 721, 816, 907
RseI CAYNNNNRTG 1 cut(s) 875
SaqAI TTAA 1 cut(s) 342
SatI GCNGC 4 cut(s) 36, 48, 666, 1011
Sau3AI GATC 2 cut(s) 88, 513
Sau96I GGNCC 1 cut(s) 194
SchI GAGTC 1 cut(s) 77
ScrFI CCNGG 3 cut(s) 560, 670, 911
SfaNI GCATC 3 cut(s) 122, 913, 982
SfcI CTRYAG 1 cut(s) 256
SmiMI CAYNNNNRTG 1 cut(s) 875
SphI GCATGC 1 cut(s) 274
Sse9I AATT 3 cut(s) 164, 407, 526
SsiI CCGC 4 cut(s) 36, 45, 48, 60
SspMI CTAG 2 cut(s) 584, 629
StyD4I CCNGG 3 cut(s) 558, 668, 909
StyI CCWWGG 2 cut(s) 197, 774
TaaI ACNGT 6 cut(s) 161, 245, 257, 347, 720, 906
TasI AATT 3 cut(s) 164, 407, 526
TauI GCSGC 2 cut(s) 38, 50
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TscAI CASTG 4 cut(s) 122, 164, 272, 696
TseFI GTSAC 3 cut(s) 305, 703, 831
TseI GCWGC 2 cut(s) 665, 1010
Tsp45I GTSAC 3 cut(s) 305, 703, 831
TspDTI ATGAA 4 cut(s) 159, 414, 539, 773
TspGWI ACGGA 3 cut(s) 5, 364, 819
TspRI CASTG 4 cut(s) 122, 164, 272, 696
XapI RAATTY 2 cut(s) 164, 526
XceI RCATGY 1 cut(s) 274
XmiI GTMKAC 1 cut(s) 441
XspI CTAG 2 cut(s) 584, 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.