Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025342.1

Orthogroup ID

OG0008262

Physical Location & Seq

Genomic Coordinates Forward (+)

1199 .. 3249

Gene Structure 2051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025342.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

atggccccccgcctccgttgcattctcttcctcaccgcactctccgccgctctgcttccgccgctcctcgccagctccggcgacgccgatccgatttaccggtcttgtgtggagcagtgtcaaaaatctggatgtgtaggggagaaatgctttcagcactgtaaattttcatctgatgggaaacctattgatggcccttggtatatcgaagaacctctctatttgcgctggaagcaatgggactgccaaactgactgtaggtaccactgcatgcttgcgagggaggaggaaagggggagacttggtgacaagcctgtaaagtatcatggaaaatggccattttggcgtgtttatggcattcaggaacctgtttccgttgctctctctgctctcaatcttgccatgcaatttcaaggttggatttcattctttatcctcgtatactacaagttgcctctgaggccaactaggaagacttactatgcatatactggtgtgtggcatatctgggggatcttatcaatgaatgcttggttttggagcggtgtatttcacagccgggatgtggagttgacagagaagctagatatttcttctgctgtcgcattacttggtttttccctcattgtagcaatactgagagctttcaatgtcagagatgaggccgccagggtcatggtctgtgctccactgattgcatttgtgaccacacacatactgtacctgaacttctataaacttgattgcggtaatacatttttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Per1

Protein Analysis

254

Amino Acids

29.28

Weight (kDa)

8.59

Isoelectric Point (pI)

41.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008262)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62130 AT5G62130 AT5G62130 AT5G62130
fragaria_vesca	FvH4_7g28930 FvH4_7g28930
malus_domestica	MD01G1195900.v1.1 MD07G1262700.v1.1
prunus_persica	Prupe.2G289300_v2.0.a1
pyrus_communis	pycom01g20650 pycom07g24180
rosa_chinensis	RchiOBHm_Chr1g0376601
rosa_laevigata	RLG00000026594
rosa_multiflora	Rmu_co8329573.1_g000001 Rmu_sc0001308.1_g000001 Rmu_sc0025342.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281950
rosa_rugosa	Rorug01G0396700
rosa_samantha	Rh1AG413300 Rh1BG373000 Rh1CG386900 Rh1DG403900
rosa_wichuraiana	Rw1G036240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	261
AccB1I	GGYRCC	1 cut(s)	261
AccBSI	CCGCTC	3 cut(s)	50, 64, 543
AccI	GTMKAC	1 cut(s)	441
AciI	CCGC	9 cut(s)	10, 36, 45, 48, 59, 62, 543, 666, 747
AclWI	GGATC	2 cut(s)	83, 521
AcoI	YGGCCR	1 cut(s)	335
AcsI	RAATTY	1 cut(s)	164
AcyI	GRCGYC	1 cut(s)	84
AfaI	GTAC	2 cut(s)	263, 722
AfiI	CCNNNNNNNGG	2 cut(s)	191, 565
AgeI	ACCGGT	1 cut(s)	99
AgsI	TTSAA	2 cut(s)	413, 649
AjnI	CCWGG	1 cut(s)	668
AluBI	AGCT	3 cut(s)	75, 583, 644
AluI	AGCT	3 cut(s)	75, 583, 644
Alw21I	GWGCWC	1 cut(s)	688
Alw26I	GTCTC	1 cut(s)	292
AlwI	GGATC	2 cut(s)	83, 521
AoxI	GGCC	5 cut(s)	3, 193, 335, 461, 663
ApoI	RAATTY	1 cut(s)	164
AsiGI	ACCGGT	1 cut(s)	99
Asp718I	GGTACC	1 cut(s)	261
AspLEI	GCGC	1 cut(s)	228
AspS9I	GGNCC	2 cut(s)	4, 194
AsuC2I	CCSGG	1 cut(s)	560
AsuHPI	GGTGA	2 cut(s)	25, 317
BalI	TGGCCA	1 cut(s)	337
BanI	GGYRCC	1 cut(s)	261
BarI	GAAGNNNNNNTAC	2 cut(s)	713, 745
BbsI	GAAGAC	1 cut(s)	479
Bbv12I	GWGCWC	1 cut(s)	688
BccI	CCATC	2 cut(s)	170, 185
BciT130I	CCWGG	1 cut(s)	670
BcnI	CCSGG	1 cut(s)	560
BcoDI	GTCTC	1 cut(s)	292
BfaI	CTAG	3 cut(s)	468, 584, 763
BfmI	CTRYAG	1 cut(s)	256
BglI	GCCNNNNNGGC	2 cut(s)	343, 460
BisI	GCNGC	3 cut(s)	48, 62, 666
BlsI	GCNGC	3 cut(s)	49, 63, 667
Bme1390I	CCNGG	2 cut(s)	560, 670
BmgT120I	GGNCC	2 cut(s)	4, 194
BmiI	GGNNCC	3 cut(s)	6, 263, 366
BmrFI	CCNGG	2 cut(s)	560, 670
BpiI	GAAGAC	1 cut(s)	479
BpuMI	CCSGG	1 cut(s)	560
BsaHI	GRCGYC	1 cut(s)	84
BsaJI	CCNNGG	2 cut(s)	197, 669
BsaWI	WCCGGW	1 cut(s)	99
BsaXI	ACNNNNNCTCC	2 cut(s)	289, 319
Bsc4I	CCNNNNNNNGG	2 cut(s)	191, 565
Bse118I	RCCGGY	1 cut(s)	99
Bse1I	ACTGG	1 cut(s)	496
Bse3DI	GCAATG	1 cut(s)	242
BseBI	CCWGG	1 cut(s)	670
BseDI	CCNNGG	2 cut(s)	197, 669
BseGI	GGATG	2 cut(s)	137, 568
BseLI	CCNNNNNNNGG	2 cut(s)	191, 565
BseMI	GCAATG	1 cut(s)	242
BseMII	CTCAG	2 cut(s)	449, 629
BseNI	ACTGG	1 cut(s)	496
BseRI	GAGGAG	2 cut(s)	56, 299
BshFI	GGCC	5 cut(s)	5, 195, 337, 463, 665
BshNI	GGYRCC	1 cut(s)	261
BshTI	ACCGGT	1 cut(s)	99
BsiHKAI	GWGCWC	1 cut(s)	688
BsiSI	CCGG	3 cut(s)	78, 100, 559
BslFI	GGGAC	1 cut(s)	254
BslI	CCNNNNNNNGG	2 cut(s)	191, 565
BsmAI	GTCTC	1 cut(s)	292
BsmFI	GGGAC	1 cut(s)	254
BsmI	GAATGC	3 cut(s)	21, 357, 532
BsnI	GGCC	5 cut(s)	5, 195, 337, 463, 665
Bsp1286I	GDGCHC	1 cut(s)	688
Bsp143I	GATC	2 cut(s)	88, 513
BspACI	CCGC	9 cut(s)	10, 36, 45, 48, 59, 62, 543, 666, 747
BspANI	GGCC	5 cut(s)	5, 195, 337, 463, 665
BspCNI	CTCAG	2 cut(s)	450, 630
BspLI	GGNNCC	3 cut(s)	6, 263, 366
BspPI	GGATC	2 cut(s)	83, 521
BspT107I	GGYRCC	1 cut(s)	261
BsrBI	CCGCTC	3 cut(s)	50, 64, 543
BsrDI	GCAATG	1 cut(s)	242
BsrFI	RCCGGY	1 cut(s)	99
BsrI	ACTGG	1 cut(s)	496
BssAI	RCCGGY	1 cut(s)	99
BssECI	CCNNGG	2 cut(s)	197, 669
BssMI	GATC	2 cut(s)	88, 513
BssNAI	GTATAC	1 cut(s)	442
BssNI	GRCGYC	1 cut(s)	84
BssT1I	CCWWGG	1 cut(s)	197
Bst1107I	GTATAC	1 cut(s)	442
Bst2UI	CCWGG	1 cut(s)	670
Bst4CI	ACNGT	3 cut(s)	161, 257, 720
Bst6I	CTCTTC	1 cut(s)	32
BstACI	GRCGYC	1 cut(s)	84
BstC8I	GCNNGC	3 cut(s)	73, 272, 276
BstDEI	CTNAG	2 cut(s)	458, 638
BstF5I	GGATG	2 cut(s)	137, 568
BstHHI	GCGC	1 cut(s)	228
BstKTI	GATC	2 cut(s)	91, 516
BstMAI	GTCTC	1 cut(s)	292
BstMBI	GATC	2 cut(s)	88, 513
BstMWI	GCNNNNNNNGC	7 cut(s)	18, 44, 61, 232, 343, 386, 460
BstNI	CCWGG	1 cut(s)	670
BstNSI	RCATGY	1 cut(s)	274
BstSCI	CCNGG	2 cut(s)	558, 668
BstSFI	CTRYAG	1 cut(s)	256
BstV2I	GAAGAC	1 cut(s)	479
BstX2I	RGATCY	1 cut(s)	513
BstXI	CCANNNNNNTGG	1 cut(s)	676
BstYI	RGATCY	1 cut(s)	513
BstZ17I	GTATAC	1 cut(s)	442
BsuRI	GGCC	5 cut(s)	5, 195, 337, 463, 665
BtsCI	GGATG	2 cut(s)	137, 568
BtsI	GCAGTG	2 cut(s)	122, 265
BtsIMutI	CAGTG	4 cut(s)	122, 157, 265, 689
Cac8I	GCNNGC	3 cut(s)	73, 272, 276
CfoI	GCGC	1 cut(s)	228
Cfr10I	RCCGGY	1 cut(s)	99
Cfr13I	GGNCC	2 cut(s)	4, 194
CseI	GACGC	1 cut(s)	92
Csp6I	GTAC	2 cut(s)	262, 721
CspAI	ACCGGT	1 cut(s)	99
CviAII	CATG	4 cut(s)	271, 326, 403, 676
CviQI	GTAC	2 cut(s)	262, 721
DdeI	CTNAG	2 cut(s)	458, 638
DpnI	GATC	2 cut(s)	90, 515
DpnII	GATC	2 cut(s)	88, 513
EaeI	YGGCCR	1 cut(s)	335
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
EciI	GGCGGA	2 cut(s)	34, 48
Eco130I	CCWWGG	1 cut(s)	197
EcoRII	CCWGG	1 cut(s)	668
EcoT14I	CCWWGG	1 cut(s)	197
EcoT22I	ATGCAT	1 cut(s)	487
ErhI	CCWWGG	1 cut(s)	197
FaeI	CATG	4 cut(s)	274, 329, 406, 679
FaqI	GGGAC	1 cut(s)	254
FatI	CATG	4 cut(s)	270, 325, 402, 675
FauI	CCCGC	1 cut(s)	17
FblI	GTMKAC	1 cut(s)	441
Fnu4HI	GCNGC	3 cut(s)	48, 62, 666
FokI	GGATG	2 cut(s)	144, 575
Fsp4HI	GCNGC	3 cut(s)	48, 62, 666
FspBI	CTAG	3 cut(s)	468, 584, 763
GlaI	GCGC	1 cut(s)	227
GluI	GCNGC	3 cut(s)	48, 62, 666
HaeIII	GGCC	5 cut(s)	5, 195, 337, 463, 665
HapII	CCGG	3 cut(s)	78, 100, 559
HgaI	GACGC	1 cut(s)	92
HhaI	GCGC	1 cut(s)	228
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	4 cut(s)	274, 329, 406, 679
Hin6I	GCGC	1 cut(s)	226
HinP1I	GCGC	1 cut(s)	226
HincII	GTYRAC	1 cut(s)	573
HindII	GTYRAC	1 cut(s)	573
HpaII	CCGG	3 cut(s)	78, 100, 559
HphI	GGTGA	2 cut(s)	25, 317
Hpy166II	GTNNAC	2 cut(s)	442, 573
Hpy188I	TCNGA	4 cut(s)	93, 175, 459, 656
Hpy188III	TCNNGA	2 cut(s)	129, 362
Hpy8I	GTNNAC	2 cut(s)	442, 573
Hpy99I	CGWCG	1 cut(s)	86
HpyCH4III	ACNGT	3 cut(s)	161, 257, 720
HpyCH4V	TGCA	5 cut(s)	21, 270, 406, 485, 698
HpyF10VI	GCNNNNNNNGC	7 cut(s)	18, 44, 61, 232, 343, 386, 460
HpyF3I	CTNAG	2 cut(s)	458, 638
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	4 cut(s)	274, 329, 406, 679
HspAI	GCGC	1 cut(s)	226
KpnI	GGTACC	1 cut(s)	265
Kzo9I	GATC	2 cut(s)	88, 513
LmnI	GCTCC	5 cut(s)	69, 80, 112, 540, 691
MaeI	CTAG	3 cut(s)	468, 584, 763
MaeIII	GTNAC	2 cut(s)	305, 703
MalI	GATC	2 cut(s)	90, 515
MbiI	CCGCTC	3 cut(s)	50, 64, 543
MboI	GATC	2 cut(s)	88, 513
MboII	GAAGA	4 cut(s)	19, 221, 484, 585
MflI	RGATCY	1 cut(s)	513
MhlI	GDGCHC	1 cut(s)	688
MlsI	TGGCCA	1 cut(s)	337
MluCI	AATT	2 cut(s)	164, 407
MluNI	TGGCCA	1 cut(s)	337
MmeI	TCCRAC	1 cut(s)	398
Mox20I	TGGCCA	1 cut(s)	337
Mph1103I	ATGCAT	1 cut(s)	487
MscI	TGGCCA	1 cut(s)	337
Msp20I	TGGCCA	1 cut(s)	337
MspI	CCGG	3 cut(s)	78, 100, 559
MspR9I	CCNGG	2 cut(s)	560, 670
Mva1269I	GAATGC	3 cut(s)	21, 357, 532
MvaI	CCWGG	1 cut(s)	670
MwoI	GCNNNNNNNGC	7 cut(s)	18, 44, 61, 232, 343, 386, 460
NciI	CCSGG	1 cut(s)	560
NdeII	GATC	2 cut(s)	88, 513
NlaIII	CATG	4 cut(s)	274, 329, 406, 679
NlaIV	GGNNCC	3 cut(s)	6, 263, 366
NmuCI	GTSAC	2 cut(s)	305, 703
NsiI	ATGCAT	1 cut(s)	487
NspI	RCATGY	1 cut(s)	274
PaeI	GCATGC	1 cut(s)	274
PctI	GAATGC	3 cut(s)	21, 357, 532
PinAI	ACCGGT	1 cut(s)	99
PkrI	GCNGC	3 cut(s)	49, 63, 667
Psp6I	CCWGG	1 cut(s)	668
PspGI	CCWGG	1 cut(s)	668
PspN4I	GGNNCC	3 cut(s)	6, 263, 366
PspPI	GGNCC	2 cut(s)	4, 194
PsuI	RGATCY	1 cut(s)	513
RsaI	GTAC	2 cut(s)	263, 722
RsaNI	GTAC	2 cut(s)	262, 721
SatI	GCNGC	3 cut(s)	48, 62, 666
Sau3AI	GATC	2 cut(s)	88, 513
Sau96I	GGNCC	2 cut(s)	4, 194
ScrFI	CCNGG	2 cut(s)	560, 670
SduI	GDGCHC	1 cut(s)	688
SetI	ASST	9 cut(s)	77, 187, 217, 263, 370, 418, 585, 646, 726
SfcI	CTRYAG	1 cut(s)	256
SphI	GCATGC	1 cut(s)	274
Sse9I	AATT	2 cut(s)	164, 407
SsiI	CCGC	9 cut(s)	10, 36, 45, 48, 59, 62, 543, 666, 747
SspMI	CTAG	3 cut(s)	468, 584, 763
StyD4I	CCNGG	2 cut(s)	558, 668
StyI	CCWWGG	1 cut(s)	197
TaaI	ACNGT	3 cut(s)	161, 257, 720
TaqI	TCGA	1 cut(s)	207
TasI	AATT	2 cut(s)	164, 407
TauI	GCSGC	3 cut(s)	50, 64, 668
TscAI	CASTG	4 cut(s)	122, 164, 272, 696
TseFI	GTSAC	2 cut(s)	305, 703
Tsp45I	GTSAC	2 cut(s)	305, 703
TspDTI	ATGAA	3 cut(s)	159, 414, 539
TspGWI	ACGGA	2 cut(s)	5, 364
TspRI	CASTG	4 cut(s)	122, 164, 272, 696
XapI	RAATTY	1 cut(s)	164
XceI	RCATGY	1 cut(s)	274
XmiI	GTMKAC	1 cut(s)	441
XspI	CTAG	3 cut(s)	468, 584, 763
Zsp2I	ATGCAT	1 cut(s)	487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.