Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001308.1

Orthogroup ID

OG0008262

Physical Location & Seq

Genomic Coordinates Reverse (-)

596 .. 4032

Gene Structure 3437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001308.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

atggccccccgcctccgttgcattctcttcctcaccgcactctccgccgctctgcttccgccgctcctcgccagctccggcgacgccgatccgatttaccggtcttgtgtggagcagtgtcaaaaatctggatgtgtaggggagaaatgctttcagcactgtaaattttcatctgatgggaaacctattgatggcccttggtatatcgaagaacctctctatttgcgctggaagcaatgggactgccaaactgactgtaggtaccactgcatgcttgcgagggaggaggaaagggggagacttggtgacaagcctgtaaagtatcatggaaaatggccattttggcgtgtttatggcattcaggaacctgtttccgttgctctctctgctctcaatcttgccatgcaatttcaaggttggatttcattctttatcctcgtatactacaagttgcctctgaggccaactaggaagacttactatgcatatactggcgtgtggcatatctgggggatcttatcaatgaatgcttggttttggagcggtgtatttcacagccgggatgtggagttgacagagaagctagatatttcttctgctgtcgcattacttggtttttccctcattgtagcaatactgagagctttcaatgtcagagatgaggccgccagggtcatgtatttgctgtggcgtagttgtgggattccaatatttctaggaaatgaacttatacaagtttttgcaggtttgaatatgaaggtttgcacggccatgggcgttgctcatcttcttatatgggcagtttgggctggtactacccgtcatctatcacgctggaagttgtgggtggttgttgtgggaggaggccttaccatgctcttggagatatatgacttcccaccttaccgaggatttatagatgctcatgcaattgcaaacggtatcaccatccctctcacatacctttggtggagttttgtcaaggatgacgccgagtttatgacagcagctctccttaagaaagcaaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Per1

Protein Analysis

343

Amino Acids

39.27

Weight (kDa)

8.88

Isoelectric Point (pI)

36.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008262)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62130 AT5G62130 AT5G62130 AT5G62130
fragaria_vesca	FvH4_7g28930 FvH4_7g28930
malus_domestica	MD01G1195900.v1.1 MD07G1262700.v1.1
prunus_persica	Prupe.2G289300_v2.0.a1
pyrus_communis	pycom01g20650 pycom07g24180
rosa_chinensis	RchiOBHm_Chr1g0376601
rosa_laevigata	RLG00000026594
rosa_multiflora	Rmu_co8329573.1_g000001 Rmu_sc0001308.1_g000001 Rmu_sc0025342.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281950
rosa_rugosa	Rorug01G0396700
rosa_samantha	Rh1AG413300 Rh1BG373000 Rh1CG386900 Rh1DG403900
rosa_wichuraiana	Rw1G036240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	734
Acc65I	GGTACC	1 cut(s)	261
AccB1I	GGYRCC	1 cut(s)	261
AccBSI	CCGCTC	3 cut(s)	50, 64, 543
AccI	GTMKAC	1 cut(s)	441
AciI	CCGC	8 cut(s)	10, 36, 45, 48, 59, 62, 543, 666
AclWI	GGATC	2 cut(s)	83, 521
AcoI	YGGCCR	2 cut(s)	335, 768
AcsI	RAATTY	1 cut(s)	164
AcyI	GRCGYC	2 cut(s)	84, 990
AfaI	GTAC	2 cut(s)	263, 814
AfiI	CCNNNNNNNGG	3 cut(s)	191, 565, 908
AflII	CTTAAG	1 cut(s)	1016
AgeI	ACCGGT	1 cut(s)	99
AgsI	TTSAA	3 cut(s)	413, 649, 751
AjnI	CCWGG	1 cut(s)	668
AluBI	AGCT	4 cut(s)	75, 583, 644, 1010
AluI	AGCT	4 cut(s)	75, 583, 644, 1010
Alw26I	GTCTC	1 cut(s)	292
AlwI	GGATC	2 cut(s)	83, 521
AoxI	GGCC	7 cut(s)	3, 193, 335, 461, 663, 768, 865
ApeKI	GCWGC	1 cut(s)	1007
ApoI	RAATTY	1 cut(s)	164
AsiGI	ACCGGT	1 cut(s)	99
Asp718I	GGTACC	1 cut(s)	261
AspLEI	GCGC	1 cut(s)	228
AspS9I	GGNCC	2 cut(s)	4, 194
AsuC2I	CCSGG	1 cut(s)	560
AsuHPI	GGTGA	3 cut(s)	25, 317, 937
BalI	TGGCCA	1 cut(s)	337
BanI	GGYRCC	1 cut(s)	261
BbsI	GAAGAC	1 cut(s)	479
BbvI	GCAGC	1 cut(s)	1019
BccI	CCATC	3 cut(s)	170, 185, 956
BceAI	ACGGC	1 cut(s)	783
BciT130I	CCWGG	1 cut(s)	670
BcnI	CCSGG	1 cut(s)	560
BcoDI	GTCTC	1 cut(s)	292
BfaI	CTAG	3 cut(s)	468, 584, 716
BfmI	CTRYAG	1 cut(s)	256
BfrI	CTTAAG	1 cut(s)	1016
BfuAI	ACCTGC	1 cut(s)	734
BglI	GCCNNNNNGGC	2 cut(s)	343, 460
BisI	GCNGC	4 cut(s)	48, 62, 666, 1008
BlsI	GCNGC	4 cut(s)	49, 63, 667, 1009
Bme1390I	CCNGG	2 cut(s)	560, 670
BmgT120I	GGNCC	2 cut(s)	4, 194
BmiI	GGNNCC	3 cut(s)	6, 263, 366
BmrFI	CCNGG	2 cut(s)	560, 670
BmsI	GCATC	1 cut(s)	910
BpiI	GAAGAC	1 cut(s)	479
BpuMI	CCSGG	1 cut(s)	560
BsaHI	GRCGYC	2 cut(s)	84, 990
BsaJI	CCNNGG	4 cut(s)	197, 669, 771, 907
BsaWI	WCCGGW	1 cut(s)	99
BsaXI	ACNNNNNCTCC	2 cut(s)	289, 319
Bsc4I	CCNNNNNNNGG	3 cut(s)	191, 565, 908
Bse118I	RCCGGY	1 cut(s)	99
Bse1I	ACTGG	1 cut(s)	496
Bse3DI	GCAATG	1 cut(s)	242
BseBI	CCWGG	1 cut(s)	670
BseDI	CCNNGG	4 cut(s)	197, 669, 771, 907
BseGI	GGATG	4 cut(s)	137, 568, 948, 991
BseLI	CCNNNNNNNGG	3 cut(s)	191, 565, 908
BseMI	GCAATG	1 cut(s)	242
BseMII	CTCAG	2 cut(s)	449, 629
BseNI	ACTGG	1 cut(s)	496
BseRI	GAGGAG	3 cut(s)	56, 299, 876
BseXI	GCAGC	1 cut(s)	1019
BshFI	GGCC	7 cut(s)	5, 195, 337, 463, 665, 770, 867
BshNI	GGYRCC	1 cut(s)	261
BshTI	ACCGGT	1 cut(s)	99
BsiSI	CCGG	3 cut(s)	78, 100, 559
BslFI	GGGAC	1 cut(s)	254
BslI	CCNNNNNNNGG	3 cut(s)	191, 565, 908
BsmAI	GTCTC	1 cut(s)	292
BsmFI	GGGAC	1 cut(s)	254
BsmI	GAATGC	3 cut(s)	21, 357, 532
BsnI	GGCC	7 cut(s)	5, 195, 337, 463, 665, 770, 867
Bsp143I	GATC	2 cut(s)	88, 513
Bsp19I	CCATGG	1 cut(s)	771
BspACI	CCGC	8 cut(s)	10, 36, 45, 48, 59, 62, 543, 666
BspANI	GGCC	7 cut(s)	5, 195, 337, 463, 665, 770, 867
BspCNI	CTCAG	2 cut(s)	450, 630
BspLI	GGNNCC	3 cut(s)	6, 263, 366
BspMI	ACCTGC	1 cut(s)	734
BspPI	GGATC	2 cut(s)	83, 521
BspT107I	GGYRCC	1 cut(s)	261
BspTI	CTTAAG	1 cut(s)	1016
BsrBI	CCGCTC	3 cut(s)	50, 64, 543
BsrDI	GCAATG	1 cut(s)	242
BsrFI	RCCGGY	1 cut(s)	99
BsrI	ACTGG	1 cut(s)	496
BssAI	RCCGGY	1 cut(s)	99
BssECI	CCNNGG	4 cut(s)	197, 669, 771, 907
BssMI	GATC	2 cut(s)	88, 513
BssNAI	GTATAC	1 cut(s)	442
BssNI	GRCGYC	2 cut(s)	84, 990
BssT1I	CCWWGG	2 cut(s)	197, 771
Bst1107I	GTATAC	1 cut(s)	442
Bst2UI	CCWGG	1 cut(s)	670
Bst4CI	ACNGT	3 cut(s)	161, 257, 941
Bst6I	CTCTTC	1 cut(s)	32
BstACI	GRCGYC	2 cut(s)	84, 990
BstAFI	CTTAAG	1 cut(s)	1016
BstC8I	GCNNGC	3 cut(s)	73, 272, 276
BstDEI	CTNAG	2 cut(s)	458, 638
BstDSI	CCRYGG	1 cut(s)	771
BstENI	CCTNNNNNAGG	1 cut(s)	906
BstF5I	GGATG	4 cut(s)	137, 568, 948, 991
BstHHI	GCGC	1 cut(s)	228
BstKTI	GATC	2 cut(s)	91, 516
BstMAI	GTCTC	1 cut(s)	292
BstMBI	GATC	2 cut(s)	88, 513
BstMWI	GCNNNNNNNGC	8 cut(s)	18, 44, 61, 232, 343, 386, 460, 806
BstNI	CCWGG	1 cut(s)	670
BstNSI	RCATGY	1 cut(s)	274
BstSCI	CCNGG	2 cut(s)	558, 668
BstSFI	CTRYAG	1 cut(s)	256
BstV1I	GCAGC	1 cut(s)	1019
BstV2I	GAAGAC	1 cut(s)	479
BstX2I	RGATCY	1 cut(s)	513
BstXI	CCANNNNNNTGG	1 cut(s)	880
BstYI	RGATCY	1 cut(s)	513
BstZ17I	GTATAC	1 cut(s)	442
BsuRI	GGCC	7 cut(s)	5, 195, 337, 463, 665, 770, 867
BtgI	CCRYGG	1 cut(s)	771
BtsCI	GGATG	4 cut(s)	137, 568, 948, 991
BtsI	GCAGTG	2 cut(s)	122, 265
BtsIMutI	CAGTG	3 cut(s)	122, 157, 265
BveI	ACCTGC	1 cut(s)	734
Cac8I	GCNNGC	3 cut(s)	73, 272, 276
CfoI	GCGC	1 cut(s)	228
Cfr10I	RCCGGY	1 cut(s)	99
Cfr13I	GGNCC	2 cut(s)	4, 194
CseI	GACGC	2 cut(s)	92, 998
Csp6I	GTAC	2 cut(s)	262, 813
CspAI	ACCGGT	1 cut(s)	99
CviAII	CATG	7 cut(s)	271, 326, 403, 676, 772, 874, 926
CviQI	GTAC	2 cut(s)	262, 813
DdeI	CTNAG	2 cut(s)	458, 638
DpnI	GATC	2 cut(s)	90, 515
DpnII	GATC	2 cut(s)	88, 513
EaeI	YGGCCR	2 cut(s)	335, 768
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
EciI	GGCGGA	2 cut(s)	34, 48
Eco130I	CCWWGG	2 cut(s)	197, 771
Eco147I	AGGCCT	1 cut(s)	867
EcoNI	CCTNNNNNAGG	1 cut(s)	906
EcoRII	CCWGG	1 cut(s)	668
EcoT14I	CCWWGG	2 cut(s)	197, 771
EcoT22I	ATGCAT	1 cut(s)	487
ErhI	CCWWGG	2 cut(s)	197, 771
FaeI	CATG	7 cut(s)	274, 329, 406, 679, 775, 877, 929
FaqI	GGGAC	1 cut(s)	254
FatI	CATG	7 cut(s)	270, 325, 402, 675, 771, 873, 925
FauI	CCCGC	1 cut(s)	17
FblI	GTMKAC	1 cut(s)	441
Fnu4HI	GCNGC	4 cut(s)	48, 62, 666, 1008
FokI	GGATG	4 cut(s)	144, 575, 935, 998
Fsp4HI	GCNGC	4 cut(s)	48, 62, 666, 1008
FspBI	CTAG	3 cut(s)	468, 584, 716
GlaI	GCGC	1 cut(s)	227
GluI	GCNGC	4 cut(s)	48, 62, 666, 1008
HaeIII	GGCC	7 cut(s)	5, 195, 337, 463, 665, 770, 867
HapII	CCGG	3 cut(s)	78, 100, 559
HgaI	GACGC	2 cut(s)	92, 998
HhaI	GCGC	1 cut(s)	228
Hin1I	GRCGYC	2 cut(s)	84, 990
Hin1II	CATG	7 cut(s)	274, 329, 406, 679, 775, 877, 929
Hin6I	GCGC	1 cut(s)	226
HinP1I	GCGC	1 cut(s)	226
HincII	GTYRAC	1 cut(s)	573
HindII	GTYRAC	1 cut(s)	573
HinfI	GANTC	1 cut(s)	703
HpaII	CCGG	3 cut(s)	78, 100, 559
HphI	GGTGA	3 cut(s)	25, 317, 937
Hpy166II	GTNNAC	2 cut(s)	442, 573
Hpy188I	TCNGA	4 cut(s)	93, 175, 459, 656
Hpy188III	TCNNGA	2 cut(s)	129, 362
Hpy8I	GTNNAC	2 cut(s)	442, 573
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	1 cut(s)	751
HpyCH4III	ACNGT	3 cut(s)	161, 257, 941
HpyCH4V	TGCA	8 cut(s)	21, 270, 406, 485, 743, 765, 929, 935
HpyF10VI	GCNNNNNNNGC	8 cut(s)	18, 44, 61, 232, 343, 386, 460, 806
HpyF3I	CTNAG	2 cut(s)	458, 638
Hsp92I	GRCGYC	2 cut(s)	84, 990
Hsp92II	CATG	7 cut(s)	274, 329, 406, 679, 775, 877, 929
HspAI	GCGC	1 cut(s)	226
KpnI	GGTACC	1 cut(s)	265
Kzo9I	GATC	2 cut(s)	88, 513
LmnI	GCTCC	4 cut(s)	69, 80, 112, 540
Lsp1109I	GCAGC	1 cut(s)	1019
LweI	GCATC	1 cut(s)	910
MaeI	CTAG	3 cut(s)	468, 584, 716
MaeIII	GTNAC	1 cut(s)	305
MalI	GATC	2 cut(s)	90, 515
MbiI	CCGCTC	3 cut(s)	50, 64, 543
MboI	GATC	2 cut(s)	88, 513
MboII	GAAGA	5 cut(s)	19, 221, 484, 585, 779
MfeI	CAATTG	1 cut(s)	930
MflI	RGATCY	1 cut(s)	513
MlsI	TGGCCA	1 cut(s)	337
MluCI	AATT	3 cut(s)	164, 407, 930
MluNI	TGGCCA	1 cut(s)	337
MmeI	TCCRAC	1 cut(s)	398
Mox20I	TGGCCA	1 cut(s)	337
Mph1103I	ATGCAT	1 cut(s)	487
MscI	TGGCCA	1 cut(s)	337
MseI	TTAA	1 cut(s)	1017
MslI	CAYNNNNRTG	1 cut(s)	770
Msp20I	TGGCCA	1 cut(s)	337
MspCI	CTTAAG	1 cut(s)	1016
MspI	CCGG	3 cut(s)	78, 100, 559
MspR9I	CCNGG	2 cut(s)	560, 670
MunI	CAATTG	1 cut(s)	930
Mva1269I	GAATGC	3 cut(s)	21, 357, 532
MvaI	CCWGG	1 cut(s)	670
MwoI	GCNNNNNNNGC	8 cut(s)	18, 44, 61, 232, 343, 386, 460, 806
NciI	CCSGG	1 cut(s)	560
NcoI	CCATGG	1 cut(s)	771
NdeII	GATC	2 cut(s)	88, 513
NlaIII	CATG	7 cut(s)	274, 329, 406, 679, 775, 877, 929
NlaIV	GGNNCC	3 cut(s)	6, 263, 366
NmeAIII	GCCGAG	1 cut(s)	1018
NmuCI	GTSAC	1 cut(s)	305
NsiI	ATGCAT	1 cut(s)	487
NspI	RCATGY	1 cut(s)	274
PaeI	GCATGC	1 cut(s)	274
PceI	AGGCCT	1 cut(s)	867
PctI	GAATGC	3 cut(s)	21, 357, 532
PfeI	GAWTC	1 cut(s)	703
PinAI	ACCGGT	1 cut(s)	99
PkrI	GCNGC	4 cut(s)	49, 63, 667, 1009
Psp6I	CCWGG	1 cut(s)	668
PspGI	CCWGG	1 cut(s)	668
PspN4I	GGNNCC	3 cut(s)	6, 263, 366
PspPI	GGNCC	2 cut(s)	4, 194
PsuI	RGATCY	1 cut(s)	513
RsaI	GTAC	2 cut(s)	263, 814
RsaNI	GTAC	2 cut(s)	262, 813
RseI	CAYNNNNRTG	1 cut(s)	770
SaqAI	TTAA	1 cut(s)	1017
SatI	GCNGC	4 cut(s)	48, 62, 666, 1008
Sau3AI	GATC	2 cut(s)	88, 513
Sau96I	GGNCC	2 cut(s)	4, 194
ScrFI	CCNGG	2 cut(s)	560, 670
SfaNI	GCATC	1 cut(s)	910
SfcI	CTRYAG	1 cut(s)	256
SmiMI	CAYNNNNRTG	1 cut(s)	770
SmlI	CTYRAG	1 cut(s)	1016
SmoI	CTYRAG	1 cut(s)	1016
SphI	GCATGC	1 cut(s)	274
Sse9I	AATT	3 cut(s)	164, 407, 930
SseBI	AGGCCT	1 cut(s)	867
SsiI	CCGC	8 cut(s)	10, 36, 45, 48, 59, 62, 543, 666
SspI	AATATT	1 cut(s)	711
SspMI	CTAG	3 cut(s)	468, 584, 716
StuI	AGGCCT	1 cut(s)	867
StyD4I	CCNGG	2 cut(s)	558, 668
StyI	CCWWGG	2 cut(s)	197, 771
TaaI	ACNGT	3 cut(s)	161, 257, 941
TaqI	TCGA	1 cut(s)	207
TasI	AATT	3 cut(s)	164, 407, 930
TauI	GCSGC	3 cut(s)	50, 64, 668
TfiI	GAWTC	1 cut(s)	703
Tru1I	TTAA	1 cut(s)	1017
Tru9I	TTAA	1 cut(s)	1017
TscAI	CASTG	3 cut(s)	122, 164, 272
TseFI	GTSAC	1 cut(s)	305
TseI	GCWGC	1 cut(s)	1007
Tsp45I	GTSAC	1 cut(s)	305
TspDTI	ATGAA	5 cut(s)	159, 414, 539, 738, 770
TspGWI	ACGGA	2 cut(s)	5, 364
TspRI	CASTG	3 cut(s)	122, 164, 272
Vha464I	CTTAAG	1 cut(s)	1016
XagI	CCTNNNNNAGG	1 cut(s)	906
XapI	RAATTY	1 cut(s)	164
XceI	RCATGY	1 cut(s)	274
XmiI	GTMKAC	1 cut(s)	441
XspI	CTAG	3 cut(s)	468, 584, 716
Zsp2I	ATGCAT	1 cut(s)	487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.