Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0008262

Physical Location & Seq

Genomic Coordinates Forward (+)

18987701 .. 18990172

Gene Structure 2472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g20650.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGCGCAGCTTCGTTGCATTCTTCTCCTCGCTTTCCTCTCCTCTCTGCTTCCTGCTCTTCGCGCCAGTGATGGCGATGCTGATCCGATTTACAAGTCTTGTGTGGCGGAGTGCGAAAAATCTGGTTGTGTAGGGGATACATGCTTTCAACACTGTAAATTTTCATCGGATGGGAAACCTATTGATGGTCCGTGGTACATGCAAGAGCCCCTCTATTTGCGCTGGAAACAATGGGACTGCCGCAGTGACTGCAGGTACCACTGCATGTTTGCAAGGGAGGAAGAGAGAGAGAAACTCGGCCATAAACCTGTCAAATACCATGGGAAATGGCCATTTCAGCGTGTTTATGGCATCCAGGAACCGGTTGCTGTGGCTCTCTCAGCTATCAATCTTGCCATTCAATTTCATGGCTGGATATCTTTTTTCATCCTTATATACTACAAGTTGCCATTGAATCCAAATAGGAAGACGTACTATGAATATACTGGTATGTGGCACATCTATGGGATCTTGGCAATGAATGCTTGGTTTTGGAGTGGTGTATTTCACAGCCGAGATGTCGAGTTGACAGAGAAGCTAGATTATTCTTCTTCTGTAGCACTACTTGGATTTTCACTCATTGTGACTCTAATTCGAGCTTTTGATGTGAGAGATGAGGCTGCAAGGGTCATGGTTTGTGCTCCACTGATTGCATTCGTGACCACACACATACTGTACCTGAACTTCTATAAACTTGATTACGGTTTGAACATGAAAGTGTGCATGGCCATGGGCATCATTCAGCTTCTTACATGGGCAGTTTGGGCTGGTGTTAGTTGCCATCCATCGCGCTGGAAGTTGTGGGTGGTAGTGGCAGGAGAAGCCCTTGCCCTGCTCTTCGAGATATATGACTTCCCACCTTACCGAGGCTTTATTGACGCGCACGCTCTCTGGAATGCAATCAACATACCTACTACATATCTCTGGTGGAGTTTTGTGAGGGATGATGCCGAGTTTGTTACATCGGCTCTCCTTAAGAAAGCAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Per1

Protein Analysis

343

Amino Acids

39.53

Weight (kDa)

7.92

Isoelectric Point (pI)

40.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008262)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62130 AT5G62130 AT5G62130 AT5G62130
fragaria_vesca	FvH4_7g28930 FvH4_7g28930
malus_domestica	MD01G1195900.v1.1 MD07G1262700.v1.1
prunus_persica	Prupe.2G289300_v2.0.a1
pyrus_communis	pycom01g20650 pycom07g24180
rosa_chinensis	RchiOBHm_Chr1g0376601
rosa_laevigata	RLG00000026594
rosa_multiflora	Rmu_co8329573.1_g000001 Rmu_sc0001308.1_g000001 Rmu_sc0025342.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281950
rosa_rugosa	Rorug01G0396700
rosa_samantha	Rh1AG413300 Rh1BG373000 Rh1CG386900 Rh1DG403900
rosa_wichuraiana	Rw1G036240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	243
Acc65I	GGTACC	1 cut(s)	255
AccB1I	GGYRCC	1 cut(s)	255
AccII	CGCG	3 cut(s)	63, 829, 920
AciI	CCGC	2 cut(s)	107, 241
AclWI	GGATC	2 cut(s)	77, 515
AcoI	YGGCCR	3 cut(s)	298, 329, 765
AcsI	RAATTY	1 cut(s)	158
AfaI	GTAC	4 cut(s)	197, 257, 473, 716
AfiI	CCNNNNNNNGG	3 cut(s)	185, 361, 905
AflII	CTTAAG	1 cut(s)	1013
AgeI	ACCGGT	1 cut(s)	361
AgsI	TTSAA	4 cut(s)	149, 401, 454, 748
AjnI	CCWGG	1 cut(s)	354
AluBI	AGCT	5 cut(s)	10, 383, 577, 638, 784
AluI	AGCT	5 cut(s)	10, 383, 577, 638, 784
Alw21I	GWGCWC	1 cut(s)	682
AlwI	GGATC	2 cut(s)	77, 515
AlwNI	CAGNNNCTG	1 cut(s)	249
AoxI	GGCC	3 cut(s)	298, 329, 765
ApeKI	GCWGC	2 cut(s)	7, 659
ApoI	RAATTY	1 cut(s)	158
AsiGI	ACCGGT	1 cut(s)	361
Asp718I	GGTACC	1 cut(s)	255
AspLEI	GCGC	5 cut(s)	7, 65, 222, 831, 922
AspS9I	GGNCC	1 cut(s)	188
AvaII	GGWCC	1 cut(s)	188
BalI	TGGCCA	2 cut(s)	331, 767
BanI	GGYRCC	1 cut(s)	255
BanII	GRGCYC	1 cut(s)	210
BarI	GAAGNNNNNNTAC	2 cut(s)	707, 739
BbsI	GAAGAC	1 cut(s)	473
Bbv12I	GWGCWC	1 cut(s)	682
BbvI	GCAGC	2 cut(s)	19, 646
BccI	CCATC	5 cut(s)	65, 164, 179, 828, 832
BciT130I	CCWGG	1 cut(s)	356
BciVI	GTATCC	1 cut(s)	130
BfaI	CTAG	1 cut(s)	578
BfmI	CTRYAG	2 cut(s)	250, 594
BfrI	CTTAAG	1 cut(s)	1013
BfuAI	ACCTGC	1 cut(s)	243
BfuI	GTATCC	1 cut(s)	130
BisI	GCNGC	3 cut(s)	8, 241, 660
BlsI	GCNGC	3 cut(s)	9, 242, 661
Bme1390I	CCNGG	1 cut(s)	356
Bme18I	GGWCC	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	188
BmiI	GGNNCC	2 cut(s)	257, 360
BmrFI	CCNGG	1 cut(s)	356
BmsI	GCATC	4 cut(s)	67, 360, 783, 976
BpiI	GAAGAC	1 cut(s)	473
BplI	GAGNNNNNCTC	2 cut(s)	279, 311
BsaBI	GATNNNNATC	1 cut(s)	81
BsaJI	CCNNGG	4 cut(s)	191, 319, 768, 904
BsaWI	WCCGGW	1 cut(s)	361
Bsc4I	CCNNNNNNNGG	3 cut(s)	185, 361, 905
Bse118I	RCCGGY	1 cut(s)	361
Bse1I	ACTGG	2 cut(s)	66, 490
Bse3DI	GCAATG	1 cut(s)	522
Bse8I	GATNNNNATC	1 cut(s)	81
BseBI	CCWGG	1 cut(s)	356
BseDI	CCNNGG	4 cut(s)	191, 319, 768, 904
BseGI	GGATG	5 cut(s)	175, 351, 426, 820, 988
BseJI	GATNNNNATC	1 cut(s)	81
BseLI	CCNNNNNNNGG	3 cut(s)	185, 361, 905
BseMI	GCAATG	1 cut(s)	522
BseMII	CTCAG	1 cut(s)	393
BseNI	ACTGG	2 cut(s)	66, 490
BseRI	GAGGAG	2 cut(s)	17, 31
BseXI	GCAGC	2 cut(s)	19, 646
Bsh1236I	CGCG	3 cut(s)	63, 829, 920
BshFI	GGCC	3 cut(s)	300, 331, 767
BshNI	GGYRCC	1 cut(s)	255
BshTI	ACCGGT	1 cut(s)	361
BsiHKAI	GWGCWC	1 cut(s)	682
BsiSI	CCGG	1 cut(s)	362
BslFI	GGGAC	1 cut(s)	248
BslI	CCNNNNNNNGG	3 cut(s)	185, 361, 905
BsmFI	GGGAC	1 cut(s)	248
BsmI	GAATGC	4 cut(s)	18, 526, 692, 940
BsnI	GGCC	3 cut(s)	300, 331, 767
Bsp1286I	GDGCHC	2 cut(s)	210, 682
Bsp143I	GATC	2 cut(s)	82, 507
Bsp19I	CCATGG	2 cut(s)	319, 768
BspACI	CCGC	2 cut(s)	107, 241
BspANI	GGCC	3 cut(s)	300, 331, 767
BspCNI	CTCAG	1 cut(s)	392
BspFNI	CGCG	3 cut(s)	63, 829, 920
BspLI	GGNNCC	2 cut(s)	257, 360
BspMAI	CTGCAG	1 cut(s)	254
BspMI	ACCTGC	1 cut(s)	243
BspPI	GGATC	2 cut(s)	77, 515
BspQI	GCTCTTC	2 cut(s)	63, 881
BspT107I	GGYRCC	1 cut(s)	255
BspTI	CTTAAG	1 cut(s)	1013
BsrDI	GCAATG	1 cut(s)	522
BsrFI	RCCGGY	1 cut(s)	361
BsrI	ACTGG	2 cut(s)	66, 490
BssAI	RCCGGY	1 cut(s)	361
BssECI	CCNNGG	4 cut(s)	191, 319, 768, 904
BssMI	GATC	2 cut(s)	82, 507
BssT1I	CCWWGG	2 cut(s)	319, 768
Bst2UI	CCWGG	1 cut(s)	356
Bst4CI	ACNGT	3 cut(s)	155, 714, 743
Bst6I	CTCTTC	3 cut(s)	63, 276, 881
BstAFI	CTTAAG	1 cut(s)	1013
BstAPI	GCANNNNNTGC	2 cut(s)	249, 521
BstC8I	GCNNGC	1 cut(s)	924
BstDEI	CTNAG	1 cut(s)	379
BstDSI	CCRYGG	3 cut(s)	191, 319, 768
BstENI	CCTNNNNNAGG	1 cut(s)	903
BstF5I	GGATG	5 cut(s)	175, 351, 426, 820, 988
BstFNI	CGCG	3 cut(s)	63, 829, 920
BstHHI	GCGC	5 cut(s)	7, 65, 222, 831, 922
BstKTI	GATC	2 cut(s)	85, 510
BstMBI	GATC	2 cut(s)	82, 507
BstMWI	GCNNNNNNNGC	7 cut(s)	62, 249, 337, 380, 521, 803, 860
BstNI	CCWGG	1 cut(s)	356
BstNSI	RCATGY	3 cut(s)	144, 202, 268
BstSCI	CCNGG	1 cut(s)	354
BstSFI	CTRYAG	2 cut(s)	250, 594
BstUI	CGCG	3 cut(s)	63, 829, 920
BstV1I	GCAGC	2 cut(s)	19, 646
BstV2I	GAAGAC	1 cut(s)	473
BstX2I	RGATCY	1 cut(s)	507
BstXI	CCANNNNNNTGG	1 cut(s)	831
BstYI	RGATCY	1 cut(s)	507
BsuI	GTATCC	1 cut(s)	130
BsuRI	GGCC	3 cut(s)	300, 331, 767
BtgI	CCRYGG	3 cut(s)	191, 319, 768
BtgZI	GCGATG	2 cut(s)	90, 810
BtsCI	GGATG	5 cut(s)	175, 351, 426, 820, 988
BtsI	GCAGTG	2 cut(s)	250, 259
BtsIMutI	CAGTG	5 cut(s)	73, 151, 250, 259, 683
BveI	ACCTGC	1 cut(s)	243
Cac8I	GCNNGC	1 cut(s)	924
CaiI	CAGNNNCTG	1 cut(s)	249
CfoI	GCGC	5 cut(s)	7, 65, 222, 831, 922
Cfr10I	RCCGGY	1 cut(s)	361
Cfr13I	GGNCC	1 cut(s)	188
CseI	GACGC	1 cut(s)	926
Csp6I	GTAC	4 cut(s)	196, 256, 472, 715
CspAI	ACCGGT	1 cut(s)	361
CviQI	GTAC	4 cut(s)	196, 256, 472, 715
DdeI	CTNAG	1 cut(s)	379
DpnI	GATC	2 cut(s)	84, 509
DpnII	GATC	2 cut(s)	82, 507
EaeI	YGGCCR	3 cut(s)	298, 329, 765
Eam1104I	CTCTTC	3 cut(s)	63, 276, 881
EarI	CTCTTC	3 cut(s)	63, 276, 881
EciI	GGCGGA	1 cut(s)	122
Eco130I	CCWWGG	2 cut(s)	319, 768
Eco24I	GRGCYC	1 cut(s)	210
Eco32I	GATATC	1 cut(s)	417
Eco47I	GGWCC	1 cut(s)	188
EcoNI	CCTNNNNNAGG	1 cut(s)	903
EcoRII	CCWGG	1 cut(s)	354
EcoRV	GATATC	1 cut(s)	417
EcoT14I	CCWWGG	2 cut(s)	319, 768
EcoT38I	GRGCYC	1 cut(s)	210
ErhI	CCWWGG	2 cut(s)	319, 768
FaqI	GGGAC	1 cut(s)	248
Fnu4HI	GCNGC	3 cut(s)	8, 241, 660
FokI	GGATG	5 cut(s)	182, 338, 413, 807, 995
FriOI	GRGCYC	1 cut(s)	210
Fsp4HI	GCNGC	3 cut(s)	8, 241, 660
FspBI	CTAG	1 cut(s)	578
GlaI	GCGC	5 cut(s)	6, 64, 221, 830, 921
GluI	GCNGC	3 cut(s)	8, 241, 660
HaeIII	GGCC	3 cut(s)	300, 331, 767
HapII	CCGG	1 cut(s)	362
HgaI	GACGC	1 cut(s)	926
HhaI	GCGC	5 cut(s)	7, 65, 222, 831, 922
Hin6I	GCGC	5 cut(s)	5, 63, 220, 829, 920
HinP1I	GCGC	5 cut(s)	5, 63, 220, 829, 920
HincII	GTYRAC	1 cut(s)	567
HindII	GTYRAC	1 cut(s)	567
HinfI	GANTC	2 cut(s)	454, 625
HpaII	CCGG	1 cut(s)	362
Hpy166II	GTNNAC	1 cut(s)	567
Hpy188I	TCNGA	2 cut(s)	87, 169
Hpy188III	TCNNGA	3 cut(s)	697, 880, 931
Hpy8I	GTNNAC	1 cut(s)	567
HpyCH4III	ACNGT	3 cut(s)	155, 714, 743
HpyCH4IV	ACGT	1 cut(s)	470
HpyCH4V	TGCA	9 cut(s)	18, 202, 252, 264, 272, 662, 692, 762, 938
HpyF10VI	GCNNNNNNNGC	7 cut(s)	62, 249, 337, 380, 521, 803, 860
HpyF3I	CTNAG	1 cut(s)	379
HpySE526I	ACGT	1 cut(s)	470
HspAI	GCGC	5 cut(s)	5, 63, 220, 829, 920
KpnI	GGTACC	1 cut(s)	259
Kzo9I	GATC	2 cut(s)	82, 507
LguI	GCTCTTC	2 cut(s)	63, 881
LmnI	GCTCC	1 cut(s)	685
Lsp1109I	GCAGC	2 cut(s)	19, 646
LweI	GCATC	4 cut(s)	67, 360, 783, 976
MaeI	CTAG	1 cut(s)	578
MaeII	ACGT	1 cut(s)	470
MaeIII	GTNAC	4 cut(s)	245, 622, 697, 997
MalI	GATC	2 cut(s)	84, 509
MboI	GATC	2 cut(s)	82, 507
MboII	GAAGA	7 cut(s)	14, 50, 293, 478, 579, 582, 868
MflI	RGATCY	1 cut(s)	507
MhlI	GDGCHC	2 cut(s)	210, 682
MlsI	TGGCCA	2 cut(s)	331, 767
MluCI	AATT	3 cut(s)	158, 401, 630
MluNI	TGGCCA	2 cut(s)	331, 767
MlyI	GAGTC	1 cut(s)	619
MnlI	CCTC	8 cut(s)	38, 47, 52, 221, 271, 649, 899, 972
Mox20I	TGGCCA	2 cut(s)	331, 767
MscI	TGGCCA	2 cut(s)	331, 767
MseI	TTAA	1 cut(s)	1014
MslI	CAYNNNNRTG	3 cut(s)	501, 755, 767
Msp20I	TGGCCA	2 cut(s)	331, 767
MspCI	CTTAAG	1 cut(s)	1013
MspI	CCGG	1 cut(s)	362
MspR9I	CCNGG	1 cut(s)	356
Mva1269I	GAATGC	4 cut(s)	18, 526, 692, 940
MvaI	CCWGG	1 cut(s)	356
MvnI	CGCG	3 cut(s)	63, 829, 920
MwoI	GCNNNNNNNGC	7 cut(s)	62, 249, 337, 380, 521, 803, 860
NcoI	CCATGG	2 cut(s)	319, 768
NdeII	GATC	2 cut(s)	82, 507
NlaIV	GGNNCC	2 cut(s)	257, 360
NmeAIII	GCCGAG	3 cut(s)	276, 578, 1015
NmuCI	GTSAC	3 cut(s)	245, 622, 697
NspI	RCATGY	3 cut(s)	144, 202, 268
PciSI	GCTCTTC	2 cut(s)	63, 881
PctI	GAATGC	4 cut(s)	18, 526, 692, 940
PfeI	GAWTC	1 cut(s)	454
PfoI	TCCNGGA	1 cut(s)	354
PinAI	ACCGGT	1 cut(s)	361
PkrI	GCNGC	3 cut(s)	9, 242, 661
PleI	GAGTC	1 cut(s)	619
PpsI	GAGTC	1 cut(s)	619
Psp6I	CCWGG	1 cut(s)	354
PspGI	CCWGG	1 cut(s)	354
PspN4I	GGNNCC	2 cut(s)	257, 360
PspPI	GGNCC	1 cut(s)	188
PstI	CTGCAG	1 cut(s)	254
PstNI	CAGNNNCTG	1 cut(s)	249
PsuI	RGATCY	1 cut(s)	507
RsaI	GTAC	4 cut(s)	197, 257, 473, 716
RsaNI	GTAC	4 cut(s)	196, 256, 472, 715
RseI	CAYNNNNRTG	3 cut(s)	501, 755, 767
SapI	GCTCTTC	2 cut(s)	63, 881
SaqAI	TTAA	1 cut(s)	1014
SatI	GCNGC	3 cut(s)	8, 241, 660
Sau3AI	GATC	2 cut(s)	82, 507
Sau96I	GGNCC	1 cut(s)	188
SchI	GAGTC	1 cut(s)	619
ScrFI	CCNGG	1 cut(s)	356
SduI	GDGCHC	2 cut(s)	210, 682
SfaNI	GCATC	4 cut(s)	67, 360, 783, 976
SfcI	CTRYAG	2 cut(s)	250, 594
SinI	GGWCC	1 cut(s)	188
SmiMI	CAYNNNNRTG	3 cut(s)	501, 755, 767
SmlI	CTYRAG	1 cut(s)	1013
SmoI	CTYRAG	1 cut(s)	1013
Sse9I	AATT	3 cut(s)	158, 401, 630
SsiI	CCGC	2 cut(s)	107, 241
SspMI	CTAG	1 cut(s)	578
StyD4I	CCNGG	1 cut(s)	354
StyI	CCWWGG	2 cut(s)	319, 768
TaaI	ACNGT	3 cut(s)	155, 714, 743
TaiI	ACGT	1 cut(s)	473
TaqI	TCGA	3 cut(s)	561, 634, 879
TasI	AATT	3 cut(s)	158, 401, 630
TauI	GCSGC	1 cut(s)	243
TfiI	GAWTC	1 cut(s)	454
Tru1I	TTAA	1 cut(s)	1014
Tru9I	TTAA	1 cut(s)	1014
TscAI	CASTG	5 cut(s)	73, 158, 250, 266, 690
TseFI	GTSAC	3 cut(s)	245, 622, 697
TseI	GCWGC	2 cut(s)	7, 659
Tsp45I	GTSAC	3 cut(s)	245, 622, 697
TspDTI	ATGAA	6 cut(s)	153, 395, 415, 492, 533, 767
TspGWI	ACGGA	1 cut(s)	180
TspRI	CASTG	5 cut(s)	73, 158, 250, 266, 690
Vha464I	CTTAAG	1 cut(s)	1013
VpaK11BI	GGWCC	1 cut(s)	188
XagI	CCTNNNNNAGG	1 cut(s)	903
XapI	RAATTY	1 cut(s)	158
XceI	RCATGY	3 cut(s)	144, 202, 268
XspI	CTAG	1 cut(s)	578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.