Rroxscaffold_4G00281950

post-GPI attachment to proteins factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0008262
Physical Location & Seq
Reverse (-)
4145508 .. 4148795
3288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00281950.1

Sequence Viewer

Length: 1062 bp
ATGGCCCCCCGCCTCCGTTGCATTCTCTTCCTCGCCGCACTCTCCGCCGCTCTGCTTCCGCCTCTCCTCGCCAGTTCCGGCGACGCCGATCCGATTTACCGGTCTTGTGTGGAGCAGTGTCAAAAATCTGGATGTGTTGGGGAGAAATGCTTTCAGCACTGTAAATTTTCATCTGATGGGAAACCTATTGATGGCCCTTGGTATATCGAAGAACCTCTCTATTTGCGCTGGAAGCAATGGGACTGCCAAACTGACTGTAGGTACCACTGCATGCTTGCGAGGGAGGAGGAAAGGGGGAGACTTGGTGACAAGCCTGTAAAGTATCATGGAAAATGGCCATTTTGGCGTGTTTATGGCATTCAGGAACCCGTTTCCGTTGCTCTATCTGCTCTCAATCTTGCCATGCAATTTCAAGGTTGGATTTCATTCTTTATCCTTGTATACTACAAGTTGCCTCTGAGGCCAACTAGGAAGACGTACTATGCATATACTGGCGTGTGGCATATCTGGGGGATCTTATCAATGAATGCTTGGTTTTGGAGCGGTGTATTTCACAGCCGGGATGTGGAGTTGACAGAGAAGCTAGATATTTCTTCTGCTGTTGCATTACTTGGTTTTTCCCTCATTGTAGCAATACTGAGAGCTTTCAATGTCAGAGATGAGGCCGCCAGGGTCATGGTCTGTGCTCCACTGATTGCATTTGTGACCACACACATACTGTACCTGAACTTCTATAAACTTGATTGCGGAAATGAACTTATACAAGTTTTCGCAGGTTTGAATATGAAGGTTTGCACGGCCATGGGCGTTGCTCAGCTTCTTATATGGGCAGTTTGGGCTGGTACCACCCGTCATCTATCACGCTGGAAGTTGTGGGTGGTTGTTGTGGGAGGAGGCGTTACCATGCTCTTGGAGATATACAACTTCCCACCTTACCGAGGATTTATAGATGCTCATGCGATTGCAAACGGTATCACCATCCCTCTCACATACCTTTGGTGGAGCTTTGTCAAGGATGACGCCGAGTTTATGACATCTGCTCTCCTTAAGAAAGCAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Per1

Protein Analysis

353

Amino Acids

40.31

Weight (kDa)

8.83

Isoelectric Point (pI)

34.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Per1 PF04080 72 - 341 1.1e-86 Per1-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 764
Acc65I GGTACC 2 cut(s) 261, 842
AccB1I GGYRCC 2 cut(s) 261, 842
AccBSI CCGCTC 2 cut(s) 50, 543
AccI GTMKAC 1 cut(s) 441
AciI CCGC 8 cut(s) 10, 36, 45, 48, 59, 543, 666, 747
AclWI GGATC 2 cut(s) 83, 521
AcoI YGGCCR 2 cut(s) 335, 798
AcsI RAATTY 1 cut(s) 164
AcyI GRCGYC 2 cut(s) 84, 1020
AfaI GTAC 4 cut(s) 263, 479, 722, 844
AfiI CCNNNNNNNGG 3 cut(s) 191, 565, 938
AflII CTTAAG 1 cut(s) 1046
AgeI ACCGGT 1 cut(s) 99
AgsI TTSAA 3 cut(s) 413, 649, 781
AjnI CCWGG 1 cut(s) 668
AluBI AGCT 4 cut(s) 583, 644, 817, 1005
AluI AGCT 4 cut(s) 583, 644, 817, 1005
Alw21I GWGCWC 1 cut(s) 688
Alw26I GTCTC 1 cut(s) 292
AlwI GGATC 2 cut(s) 83, 521
AoxI GGCC 6 cut(s) 3, 193, 335, 461, 663, 798
ApoI RAATTY 1 cut(s) 164
AsiGI ACCGGT 1 cut(s) 99
Asp718I GGTACC 2 cut(s) 261, 842
AspLEI GCGC 1 cut(s) 228
AspS9I GGNCC 2 cut(s) 4, 194
AsuC2I CCSGG 1 cut(s) 560
AsuHPI GGTGA 2 cut(s) 317, 967
BalI TGGCCA 1 cut(s) 337
BanI GGYRCC 2 cut(s) 261, 842
BarI GAAGNNNNNNTAC 2 cut(s) 713, 745
BbsI GAAGAC 1 cut(s) 479
Bbv12I GWGCWC 1 cut(s) 688
BccI CCATC 3 cut(s) 170, 185, 986
BceAI ACGGC 1 cut(s) 813
BciT130I CCWGG 1 cut(s) 670
BcnI CCSGG 1 cut(s) 560
BcoDI GTCTC 1 cut(s) 292
BfaI CTAG 2 cut(s) 468, 584
BfmI CTRYAG 1 cut(s) 256
BfrI CTTAAG 1 cut(s) 1046
BfuAI ACCTGC 1 cut(s) 764
BglI GCCNNNNNGGC 2 cut(s) 343, 460
BisI GCNGC 3 cut(s) 36, 48, 666
BlpI GCTNAGC 1 cut(s) 813
BlsI GCNGC 3 cut(s) 37, 49, 667
Bme1390I CCNGG 2 cut(s) 560, 670
BmgT120I GGNCC 2 cut(s) 4, 194
BmiI GGNNCC 4 cut(s) 6, 263, 366, 844
BmrFI CCNGG 2 cut(s) 560, 670
BmsI GCATC 1 cut(s) 940
BpiI GAAGAC 1 cut(s) 479
Bpu1102I GCTNAGC 1 cut(s) 813
BpuMI CCSGG 1 cut(s) 560
BsaHI GRCGYC 2 cut(s) 84, 1020
BsaJI CCNNGG 4 cut(s) 197, 669, 801, 937
BsaWI WCCGGW 1 cut(s) 99
BsaXI ACNNNNNCTCC 4 cut(s) 289, 319, 882, 912
Bsc4I CCNNNNNNNGG 3 cut(s) 191, 565, 938
Bse118I RCCGGY 1 cut(s) 99
Bse1I ACTGG 2 cut(s) 72, 496
Bse3DI GCAATG 1 cut(s) 242
BseBI CCWGG 1 cut(s) 670
BseDI CCNNGG 4 cut(s) 197, 669, 801, 937
BseGI GGATG 4 cut(s) 137, 568, 978, 1021
BseLI CCNNNNNNNGG 3 cut(s) 191, 565, 938
BseMI GCAATG 1 cut(s) 242
BseMII CTCAG 3 cut(s) 449, 629, 827
BseNI ACTGG 2 cut(s) 72, 496
BseRI GAGGAG 3 cut(s) 56, 299, 906
BshFI GGCC 6 cut(s) 5, 195, 337, 463, 665, 800
BshNI GGYRCC 2 cut(s) 261, 842
BshTI ACCGGT 1 cut(s) 99
BsiHKAI GWGCWC 1 cut(s) 688
BsiSI CCGG 3 cut(s) 78, 100, 559
BslFI GGGAC 1 cut(s) 254
BslI CCNNNNNNNGG 3 cut(s) 191, 565, 938
BsmAI GTCTC 1 cut(s) 292
BsmFI GGGAC 1 cut(s) 254
BsmI GAATGC 3 cut(s) 21, 357, 532
BsnI GGCC 6 cut(s) 5, 195, 337, 463, 665, 800
Bsp1286I GDGCHC 1 cut(s) 688
Bsp143I GATC 2 cut(s) 88, 513
Bsp1720I GCTNAGC 1 cut(s) 813
Bsp19I CCATGG 1 cut(s) 801
BspACI CCGC 8 cut(s) 10, 36, 45, 48, 59, 543, 666, 747
BspANI GGCC 6 cut(s) 5, 195, 337, 463, 665, 800
BspCNI CTCAG 3 cut(s) 450, 630, 826
BspLI GGNNCC 4 cut(s) 6, 263, 366, 844
BspMI ACCTGC 1 cut(s) 764
BspPI GGATC 2 cut(s) 83, 521
BspT107I GGYRCC 2 cut(s) 261, 842
BspTI CTTAAG 1 cut(s) 1046
BsrBI CCGCTC 2 cut(s) 50, 543
BsrDI GCAATG 1 cut(s) 242
BsrFI RCCGGY 1 cut(s) 99
BsrI ACTGG 2 cut(s) 72, 496
BssAI RCCGGY 1 cut(s) 99
BssECI CCNNGG 4 cut(s) 197, 669, 801, 937
BssMI GATC 2 cut(s) 88, 513
BssNAI GTATAC 1 cut(s) 442
BssNI GRCGYC 2 cut(s) 84, 1020
BssT1I CCWWGG 2 cut(s) 197, 801
Bst1107I GTATAC 1 cut(s) 442
Bst2UI CCWGG 1 cut(s) 670
Bst4CI ACNGT 4 cut(s) 161, 257, 720, 971
Bst6I CTCTTC 1 cut(s) 32
BstACI GRCGYC 2 cut(s) 84, 1020
BstAFI CTTAAG 1 cut(s) 1046
BstC8I GCNNGC 2 cut(s) 272, 276
BstDEI CTNAG 3 cut(s) 458, 638, 813
BstDSI CCRYGG 1 cut(s) 801
BstENI CCTNNNNNAGG 1 cut(s) 936
BstF5I GGATG 4 cut(s) 137, 568, 978, 1021
BstHHI GCGC 1 cut(s) 228
BstKTI GATC 2 cut(s) 91, 516
BstMAI GTCTC 1 cut(s) 292
BstMBI GATC 2 cut(s) 88, 513
BstMWI GCNNNNNNNGC 7 cut(s) 18, 44, 232, 343, 386, 460, 836
BstNI CCWGG 1 cut(s) 670
BstNSI RCATGY 1 cut(s) 274
BstSCI CCNGG 2 cut(s) 558, 668
BstSFI CTRYAG 1 cut(s) 256
BstV2I GAAGAC 1 cut(s) 479
BstX2I RGATCY 1 cut(s) 513
BstXI CCANNNNNNTGG 2 cut(s) 676, 910
BstYI RGATCY 1 cut(s) 513
BstZ17I GTATAC 1 cut(s) 442
BsuRI GGCC 6 cut(s) 5, 195, 337, 463, 665, 800
BtgI CCRYGG 1 cut(s) 801
BtsCI GGATG 4 cut(s) 137, 568, 978, 1021
BtsI GCAGTG 2 cut(s) 122, 265
BtsIMutI CAGTG 4 cut(s) 122, 157, 265, 689
BveI ACCTGC 1 cut(s) 764
Cac8I GCNNGC 2 cut(s) 272, 276
CfoI GCGC 1 cut(s) 228
Cfr10I RCCGGY 1 cut(s) 99
Cfr13I GGNCC 2 cut(s) 4, 194
CseI GACGC 2 cut(s) 92, 1028
Csp6I GTAC 4 cut(s) 262, 478, 721, 843
CspAI ACCGGT 1 cut(s) 99
CviAII CATG 7 cut(s) 271, 326, 403, 676, 802, 904, 956
CviQI GTAC 4 cut(s) 262, 478, 721, 843
DdeI CTNAG 3 cut(s) 458, 638, 813
DpnI GATC 2 cut(s) 90, 515
DpnII GATC 2 cut(s) 88, 513
EaeI YGGCCR 2 cut(s) 335, 798
Eam1104I CTCTTC 1 cut(s) 32
EarI CTCTTC 1 cut(s) 32
EciI GGCGGA 2 cut(s) 34, 48
Eco130I CCWWGG 2 cut(s) 197, 801
EcoNI CCTNNNNNAGG 1 cut(s) 936
EcoRII CCWGG 1 cut(s) 668
EcoT14I CCWWGG 2 cut(s) 197, 801
EcoT22I ATGCAT 1 cut(s) 487
ErhI CCWWGG 2 cut(s) 197, 801
FaeI CATG 7 cut(s) 274, 329, 406, 679, 805, 907, 959
FaqI GGGAC 1 cut(s) 254
FatI CATG 7 cut(s) 270, 325, 402, 675, 801, 903, 955
FauI CCCGC 1 cut(s) 17
FblI GTMKAC 1 cut(s) 441
Fnu4HI GCNGC 3 cut(s) 36, 48, 666
FokI GGATG 4 cut(s) 144, 575, 965, 1028
Fsp4HI GCNGC 3 cut(s) 36, 48, 666
FspBI CTAG 2 cut(s) 468, 584
GlaI GCGC 1 cut(s) 227
GluI GCNGC 3 cut(s) 36, 48, 666
HaeIII GGCC 6 cut(s) 5, 195, 337, 463, 665, 800
HapII CCGG 3 cut(s) 78, 100, 559
HgaI GACGC 2 cut(s) 92, 1028
HhaI GCGC 1 cut(s) 228
Hin1I GRCGYC 2 cut(s) 84, 1020
Hin1II CATG 7 cut(s) 274, 329, 406, 679, 805, 907, 959
Hin6I GCGC 1 cut(s) 226
HinP1I GCGC 1 cut(s) 226
HincII GTYRAC 1 cut(s) 573
HindII GTYRAC 1 cut(s) 573
HpaII CCGG 3 cut(s) 78, 100, 559
HphI GGTGA 2 cut(s) 317, 967
Hpy166II GTNNAC 2 cut(s) 442, 573
Hpy188I TCNGA 4 cut(s) 93, 175, 459, 656
Hpy188III TCNNGA 2 cut(s) 129, 362
Hpy8I GTNNAC 2 cut(s) 442, 573
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 1 cut(s) 781
HpyCH4III ACNGT 4 cut(s) 161, 257, 720, 971
HpyCH4IV ACGT 1 cut(s) 476
HpyCH4V TGCA 8 cut(s) 21, 270, 406, 485, 605, 698, 795, 965
HpyF10VI GCNNNNNNNGC 7 cut(s) 18, 44, 232, 343, 386, 460, 836
HpyF3I CTNAG 3 cut(s) 458, 638, 813
HpySE526I ACGT 1 cut(s) 476
Hsp92I GRCGYC 2 cut(s) 84, 1020
Hsp92II CATG 7 cut(s) 274, 329, 406, 679, 805, 907, 959
HspAI GCGC 1 cut(s) 226
KpnI GGTACC 2 cut(s) 265, 846
Kzo9I GATC 2 cut(s) 88, 513
LmnI GCTCC 4 cut(s) 112, 540, 691, 1002
LweI GCATC 1 cut(s) 940
MaeI CTAG 2 cut(s) 468, 584
MaeII ACGT 1 cut(s) 476
MaeIII GTNAC 3 cut(s) 305, 703, 898
MalI GATC 2 cut(s) 90, 515
MbiI CCGCTC 2 cut(s) 50, 543
MboI GATC 2 cut(s) 88, 513
MboII GAAGA 4 cut(s) 19, 221, 484, 585
MflI RGATCY 1 cut(s) 513
MhlI GDGCHC 1 cut(s) 688
MlsI TGGCCA 1 cut(s) 337
MluCI AATT 2 cut(s) 164, 407
MluNI TGGCCA 1 cut(s) 337
MmeI TCCRAC 1 cut(s) 398
Mox20I TGGCCA 1 cut(s) 337
Mph1103I ATGCAT 1 cut(s) 487
MscI TGGCCA 1 cut(s) 337
MseI TTAA 1 cut(s) 1047
MslI CAYNNNNRTG 1 cut(s) 800
Msp20I TGGCCA 1 cut(s) 337
MspCI CTTAAG 1 cut(s) 1046
MspI CCGG 3 cut(s) 78, 100, 559
MspR9I CCNGG 2 cut(s) 560, 670
Mva1269I GAATGC 3 cut(s) 21, 357, 532
MvaI CCWGG 1 cut(s) 670
MwoI GCNNNNNNNGC 7 cut(s) 18, 44, 232, 343, 386, 460, 836
NciI CCSGG 1 cut(s) 560
NcoI CCATGG 1 cut(s) 801
NdeII GATC 2 cut(s) 88, 513
NlaIII CATG 7 cut(s) 274, 329, 406, 679, 805, 907, 959
NlaIV GGNNCC 4 cut(s) 6, 263, 366, 844
NmeAIII GCCGAG 1 cut(s) 1048
NmuCI GTSAC 2 cut(s) 305, 703
NsiI ATGCAT 1 cut(s) 487
NspI RCATGY 1 cut(s) 274
PaeI GCATGC 1 cut(s) 274
PctI GAATGC 3 cut(s) 21, 357, 532
PinAI ACCGGT 1 cut(s) 99
PkrI GCNGC 3 cut(s) 37, 49, 667
Psp6I CCWGG 1 cut(s) 668
PspGI CCWGG 1 cut(s) 668
PspN4I GGNNCC 4 cut(s) 6, 263, 366, 844
PspPI GGNCC 2 cut(s) 4, 194
PsuI RGATCY 1 cut(s) 513
RsaI GTAC 4 cut(s) 263, 479, 722, 844
RsaNI GTAC 4 cut(s) 262, 478, 721, 843
RseI CAYNNNNRTG 1 cut(s) 800
SaqAI TTAA 1 cut(s) 1047
SatI GCNGC 3 cut(s) 36, 48, 666
Sau3AI GATC 2 cut(s) 88, 513
Sau96I GGNCC 2 cut(s) 4, 194
ScrFI CCNGG 2 cut(s) 560, 670
SduI GDGCHC 1 cut(s) 688
SfaNI GCATC 1 cut(s) 940
SfcI CTRYAG 1 cut(s) 256
SmiMI CAYNNNNRTG 1 cut(s) 800
SmlI CTYRAG 1 cut(s) 1046
SmoI CTYRAG 1 cut(s) 1046
SphI GCATGC 1 cut(s) 274
Sse9I AATT 2 cut(s) 164, 407
SsiI CCGC 8 cut(s) 10, 36, 45, 48, 59, 543, 666, 747
SspMI CTAG 2 cut(s) 468, 584
StyD4I CCNGG 2 cut(s) 558, 668
StyI CCWWGG 2 cut(s) 197, 801
TaaI ACNGT 4 cut(s) 161, 257, 720, 971
TaiI ACGT 1 cut(s) 479
TaqI TCGA 1 cut(s) 207
TasI AATT 2 cut(s) 164, 407
TauI GCSGC 3 cut(s) 38, 50, 668
Tru1I TTAA 1 cut(s) 1047
Tru9I TTAA 1 cut(s) 1047
TscAI CASTG 4 cut(s) 122, 164, 272, 696
TseFI GTSAC 2 cut(s) 305, 703
Tsp45I GTSAC 2 cut(s) 305, 703
TspDTI ATGAA 5 cut(s) 159, 414, 539, 768, 800
TspGWI ACGGA 2 cut(s) 5, 364
TspRI CASTG 4 cut(s) 122, 164, 272, 696
Vha464I CTTAAG 1 cut(s) 1046
XagI CCTNNNNNAGG 1 cut(s) 936
XapI RAATTY 1 cut(s) 164
XceI RCATGY 1 cut(s) 274
XmiI GTMKAC 1 cut(s) 441
XspI CTAG 2 cut(s) 468, 584
Zsp2I ATGCAT 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.