Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010912

Physical Location & Seq

Genomic Coordinates Reverse (-)

25051978 .. 25054444

Gene Structure 2467 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G62390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGACTTTGTTCCATAGACTCGATCTCATCGATCCGTACACGTGTACACCACTCATCGTCCGTGAAACCTCCATTGTTGAACCTTCATCATTGTTCCTAGGGTTTCCTTCCTTCATCGACGAAGACATTGAAGATCTCTTCGAGTTTTCATCACCTAATCCTCTCGATCTATTCGAAACCGTGACGGATCTGGTTAAGATTAAGAAATCTCCGTCGTCTTGCAAGTACAAGGTGATTCGTCGGAGATTAGAGCCGGAGTATCCATTGAAGTATCTTTGTGACCGTGTTTCTGATTTGGAATCAAAGTTTGATAGATTGGTTAGTCCTAAGAGTGATAGGAAGTATACATTGACGAAGGAGATAAAGGGAAGTGGTGAGAGGAAGTATAAATGGGAGGCGGAGATTCAAGGACCGTTGGAGAGGAAGTATAAGTTGGAAGCTGAGATTGAAGGTTCGGGAGAGAGGAAGTATAGATGGACGACGGAGATTAAAGGAGGGAAGAAGGATGAGGAAGGGTTAAAGTTAGCTGCTTTGAAGAAGGAGAAGGCGAAAGCTAAAGCTATTGCTGCTGCTGAAGCGGAGAAGAAGAAGAATAAGAATAAGAAGAAGAGTTATAATTGGACGACGGAGGTGAAGAGTGAGAGAGAGAATGGTGAGGTTTCGCATACTTATATCATCAAGGCTACTACTGGAGGAGAGAAAAAGAAGAAACATGAGGAGAAGGAGAAGAAAGAGAAGATAGAGACTAAGAGCAAGAAGAAGGAGAAAACTCGTGTTGTGGTGATTGAGGAGGAGGAAGAAGAAGATGATGAGTCGTCAGAACATGGTGCTATCGTTCTTAGGAAGGCGTTTTCCAGAAGGAATGGAGCAGTTAGGACCAAGAAGGGGAAGAACAAGGAAATGCCACCTGAATATGCGGCTGTGATGATCCAGAGGGCCTTCAAAGCTTATTTGATTCGTCGCTCAAAATCATTGCGTGCTCTTCGTGATCTTGCTATTGCAAAGACTAAACTTAAGGAGCTAAGAGCTTCTTTCCACAACTTCAGCTACCGTCGCCTGATTGCTCGTGATGGAGAGGAGCGTCAGAAATTCTCAGAGAAGATCATTGTACTCCTCCTCACTGTTGACGCCATAGAGGGAGTTGATGTGATGGTTCGAGGAGCGAAGAGATCAATGGTGGATGAGCTGGAAGCAATGTTAGATGTGGTAGACCCGCAACCGCAGGGGAAATCATTGTCGATGAGAAGAAGAACATTTGATATGCCAGACAGTTTGATCCGCAAAGAAATCGCAGAGGGAGTGACTCAGATTGTGCAGATGCTTGAAACGGAAGAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005911 GO:0006457 GO:0006950 GO:0006986 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009506 GO:0009605 GO:0009607 GO:0009628 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0030054 GO:0033554 GO:0034605 GO:0034620 GO:0035966 GO:0035967 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055044 GO:0070417 GO:0070887 GO:0071310 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG

Protein Analysis

446

Amino Acids

51.57

Weight (kDa)

9.28

Isoelectric Point (pI)

49.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010912)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62390
fragaria_vesca	FvH4_7g27600 FvH4_7g27600
prunus_persica	Prupe.2G277700_v2.0.a1
pyrus_communis	pycom01g19380 pycom01g19390 pycom07g22700
rosa_chinensis	RchiOBHm_Chr1g0374461
rosa_laevigata	RLG00000026735
rosa_multiflora	Rmu_sc0011139.1_g000005 Rmu_sc0016220.1_g000001 Rmu_sc0017667.1_g000001 Rmu_ssc0000007.1_g000007
rosa_roxburghii	Rroxscaffold_4G00283460
rosa_rugosa	Rorug01G0383300
rosa_samantha	Rh1AG394200 Rh1BG358800 Rh1CG371800 Rh1DG389400
rosa_wichuraiana	Rw1G034200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	615
AccI	GTMKAC	2 cut(s)	344, 1209
AciI	CCGC	6 cut(s)	398, 578, 917, 1214, 1220, 1279
AclWI	GGATC	4 cut(s)	26, 195, 922, 1270
AcsI	RAATTY	1 cut(s)	1088
AcuI	CTGAAG	2 cut(s)	594, 1027
AcvI	CACGTG	1 cut(s)	42
AcyI	GRCGYC	1 cut(s)	1128
AfaI	GTAC	4 cut(s)	38, 46, 227, 1110
AfiI	CCNNNNNNNGG	1 cut(s)	885
AflII	CTTAAG	1 cut(s)	1013
AflIII	ACRYGT	2 cut(s)	39, 41
AgsI	TTSAA	8 cut(s)	80, 131, 268, 407, 449, 535, 943, 1325
AjuI	GAANNNNNNNTTGG	2 cut(s)	416, 448
AluBI	AGCT	9 cut(s)	440, 527, 554, 560, 947, 1021, 1028, 1047, 1186
AluI	AGCT	9 cut(s)	440, 527, 554, 560, 947, 1021, 1028, 1047, 1186
Alw21I	GWGCWC	1 cut(s)	982
Alw26I	GTCTC	1 cut(s)	737
AlwI	GGATC	4 cut(s)	26, 195, 922, 1270
AoxI	GGCC	1 cut(s)	936
ApeKI	GCWGC	3 cut(s)	527, 566, 569
ApoI	RAATTY	1 cut(s)	1088
AspA2I	CCTAGG	1 cut(s)	97
AspS9I	GGNCC	3 cut(s)	410, 876, 936
AsuHPI	GGTGA	6 cut(s)	144, 244, 386, 643, 665, 793
AsuII	TTCGAA	1 cut(s)	174
AvaII	GGWCC	2 cut(s)	410, 876
AvrII	CCTAGG	1 cut(s)	97
BauI	CACGAG	2 cut(s)	771, 1065
BbrPI	CACGTG	1 cut(s)	42
BbsI	GAAGAC	1 cut(s)	129
Bbv12I	GWGCWC	1 cut(s)	982
BbvI	GCAGC	3 cut(s)	514, 553, 556
BccI	CCATC	3 cut(s)	468, 1064, 1144
BcgI	CGANNNNNNTGC	2 cut(s)	1270, 1304
BciVI	GTATCC	1 cut(s)	270
BcoDI	GTCTC	1 cut(s)	737
BfaI	CTAG	1 cut(s)	98
BfrI	CTTAAG	1 cut(s)	1013
BfuI	GTATCC	1 cut(s)	270
BglII	AGATCT	1 cut(s)	133
BisI	GCNGC	4 cut(s)	528, 567, 570, 918
BlnI	CCTAGG	1 cut(s)	97
BlsI	GCNGC	4 cut(s)	529, 568, 571, 919
Bme18I	GGWCC	2 cut(s)	410, 876
BmgT120I	GGNCC	3 cut(s)	410, 876, 936
BmsI	GCATC	1 cut(s)	1308
BpiI	GAAGAC	1 cut(s)	129
BpmI	CTGGAG	1 cut(s)	711
Bpu14I	TTCGAA	1 cut(s)	174
Bsa29I	ATCGAT	1 cut(s)	30
BsaAI	YACGTR	1 cut(s)	42
BsaHI	GRCGYC	1 cut(s)	1128
BsaJI	CCNNGG	1 cut(s)	97
BsaXI	ACNNNNNCTCC	4 cut(s)	410, 440, 1131, 1161
Bsc4I	CCNNNNNNNGG	1 cut(s)	885
Bse1I	ACTGG	1 cut(s)	694
Bse3DI	GCAATG	2 cut(s)	971, 1200
BseCI	ATCGAT	1 cut(s)	30
BseDI	CCNNGG	1 cut(s)	97
BseGI	GGATG	2 cut(s)	511, 1186
BseLI	CCNNNNNNNGG	1 cut(s)	885
BseMI	GCAATG	2 cut(s)	971, 1200
BseMII	CTCAG	3 cut(s)	432, 1107, 1319
BseNI	ACTGG	1 cut(s)	694
BseRI	GAGGAG	8 cut(s)	708, 731, 803, 806, 1091, 1103, 1106, 1173
BseXI	GCAGC	3 cut(s)	514, 553, 556
BsgI	GTGCAG	1 cut(s)	1334
BshFI	GGCC	1 cut(s)	938
BshVI	ATCGAT	1 cut(s)	30
BsiHKAI	GWGCWC	1 cut(s)	982
BsiSI	CCGG	1 cut(s)	254
BslI	CCNNNNNNNGG	1 cut(s)	885
BsmAI	GTCTC	1 cut(s)	737
BsnI	GGCC	1 cut(s)	938
Bsp119I	TTCGAA	1 cut(s)	174
Bsp1286I	GDGCHC	1 cut(s)	982
Bsp1407I	TGTACA	1 cut(s)	44
BspACI	CCGC	6 cut(s)	398, 578, 917, 1214, 1220, 1279
BspANI	GGCC	1 cut(s)	938
BspCNI	CTCAG	3 cut(s)	433, 1106, 1318
BspDI	ATCGAT	1 cut(s)	30
BspPI	GGATC	4 cut(s)	26, 195, 922, 1270
BspQI	GCTCTTC	1 cut(s)	987
BspT104I	TTCGAA	1 cut(s)	174
BspTI	CTTAAG	1 cut(s)	1013
BsrDI	GCAATG	2 cut(s)	971, 1200
BsrGI	TGTACA	1 cut(s)	44
BsrI	ACTGG	1 cut(s)	694
BssECI	CCNNGG	1 cut(s)	97
BssNAI	GTATAC	1 cut(s)	345
BssNI	GRCGYC	1 cut(s)	1128
BssSI	CACGAG	2 cut(s)	771, 1065
BssT1I	CCWWGG	1 cut(s)	97
Bst1107I	GTATAC	1 cut(s)	345
Bst2BI	CACGAG	2 cut(s)	771, 1065
Bst4CI	ACNGT	6 cut(s)	181, 284, 414, 1052, 1123, 1271
Bst6I	CTCTTC	5 cut(s)	143, 602, 629, 987, 1160
BstACI	GRCGYC	1 cut(s)	1128
BstAFI	CTTAAG	1 cut(s)	1013
BstAUI	TGTACA	1 cut(s)	44
BstBAI	YACGTR	1 cut(s)	42
BstBI	TTCGAA	1 cut(s)	174
BstC8I	GCNNGC	1 cut(s)	978
BstDEI	CTNAG	7 cut(s)	327, 441, 747, 839, 1022, 1093, 1305
BstF5I	GGATG	2 cut(s)	511, 1186
BstMAI	GTCTC	1 cut(s)	737
BstMWI	GCNNNNNNNGC	4 cut(s)	566, 575, 944, 1053
BstV1I	GCAGC	3 cut(s)	514, 553, 556
BstV2I	GAAGAC	1 cut(s)	129
BstX2I	RGATCY	2 cut(s)	133, 187
BstYI	RGATCY	2 cut(s)	133, 187
BstZ17I	GTATAC	1 cut(s)	345
Bsu15I	ATCGAT	1 cut(s)	30
BsuI	GTATCC	1 cut(s)	270
BsuRI	GGCC	1 cut(s)	938
BsuTUI	ATCGAT	1 cut(s)	30
BtsCI	GGATG	2 cut(s)	511, 1186
BtsIMutI	CAGTG	1 cut(s)	1119
Cac8I	GCNNGC	1 cut(s)	978
Cfr13I	GGNCC	3 cut(s)	410, 876, 936
ClaI	ATCGAT	1 cut(s)	30
CseI	GACGC	2 cut(s)	1070, 1136
Csp6I	GTAC	4 cut(s)	37, 45, 226, 1109
CviAII	CATG	2 cut(s)	713, 824
CviQI	GTAC	4 cut(s)	37, 45, 226, 1109
DdeI	CTNAG	7 cut(s)	327, 441, 747, 839, 1022, 1093, 1305
Eam1104I	CTCTTC	5 cut(s)	143, 602, 629, 987, 1160
EarI	CTCTTC	5 cut(s)	143, 602, 629, 987, 1160
EciI	GGCGGA	1 cut(s)	413
Eco130I	CCWWGG	1 cut(s)	97
Eco47I	GGWCC	2 cut(s)	410, 876
Eco57I	CTGAAG	2 cut(s)	594, 1027
Eco72I	CACGTG	1 cut(s)	42
EcoO109I	RGGNCCY	1 cut(s)	936
EcoT14I	CCWWGG	1 cut(s)	97
ErhI	CCWWGG	1 cut(s)	97
FaeI	CATG	2 cut(s)	716, 827
FalI	AAGNNNNNCTT	2 cut(s)	1015, 1047
FatI	CATG	2 cut(s)	712, 823
FauI	CCCGC	1 cut(s)	1221
FblI	GTMKAC	2 cut(s)	344, 1209
Fnu4HI	GCNGC	4 cut(s)	528, 567, 570, 918
FokI	GGATG	2 cut(s)	518, 1193
Fsp4HI	GCNGC	4 cut(s)	528, 567, 570, 918
FspBI	CTAG	1 cut(s)	98
GluI	GCNGC	4 cut(s)	528, 567, 570, 918
GsuI	CTGGAG	1 cut(s)	711
HaeIII	GGCC	1 cut(s)	938
HapII	CCGG	1 cut(s)	254
HgaI	GACGC	2 cut(s)	1070, 1136
Hin1I	GRCGYC	1 cut(s)	1128
Hin1II	CATG	2 cut(s)	716, 827
HincII	GTYRAC	1 cut(s)	1126
HindII	GTYRAC	1 cut(s)	1126
HindIII	AAGCTT	1 cut(s)	945
HinfI	GANTC	7 cut(s)	18, 235, 299, 403, 812, 955, 1303
HpaII	CCGG	1 cut(s)	254
HphI	GGTGA	6 cut(s)	144, 244, 386, 643, 665, 793
Hpy166II	GTNNAC	6 cut(s)	39, 45, 47, 345, 1126, 1210
Hpy188I	TCNGA	6 cut(s)	243, 292, 820, 1086, 1096, 1308
Hpy188III	TCNNGA	6 cut(s)	164, 456, 855, 931, 986, 1067
Hpy8I	GTNNAC	6 cut(s)	39, 45, 47, 345, 1126, 1210
Hpy99I	CGWCG	7 cut(s)	122, 217, 243, 484, 628, 963, 1056
HpyCH4III	ACNGT	6 cut(s)	181, 284, 414, 1052, 1123, 1271
HpyCH4IV	ACGT	1 cut(s)	41
HpyCH4V	TGCA	3 cut(s)	222, 1001, 1315
HpyF10VI	GCNNNNNNNGC	4 cut(s)	566, 575, 944, 1053
HpyF3I	CTNAG	7 cut(s)	327, 441, 747, 839, 1022, 1093, 1305
HpySE526I	ACGT	1 cut(s)	41
Hsp92I	GRCGYC	1 cut(s)	1128
Hsp92II	CATG	2 cut(s)	716, 827
LguI	GCTCTTC	1 cut(s)	987
LmnI	GCTCC	4 cut(s)	866, 1018, 1078, 1160
Lsp1109I	GCAGC	3 cut(s)	514, 553, 556
LweI	GCATC	1 cut(s)	1308
MaeI	CTAG	1 cut(s)	98
MaeII	ACGT	1 cut(s)	41
MaeIII	GTNAC	3 cut(s)	181, 278, 1300
MflI	RGATCY	2 cut(s)	133, 187
MhlI	GDGCHC	1 cut(s)	982
MluCI	AATT	2 cut(s)	616, 1088
MlyI	GAGTC	3 cut(s)	12, 821, 1297
MmeI	TCCRAC	3 cut(s)	221, 396, 414
MseI	TTAA	5 cut(s)	195, 201, 489, 518, 1014
MspCI	CTTAAG	1 cut(s)	1013
MspI	CCGG	1 cut(s)	254
MwoI	GCNNNNNNNGC	4 cut(s)	566, 575, 944, 1053
NlaIII	CATG	2 cut(s)	716, 827
NmuCI	GTSAC	3 cut(s)	181, 278, 1300
NspV	TTCGAA	1 cut(s)	174
PciSI	GCTCTTC	1 cut(s)	987
PcsI	WCGNNNNNNNCGW	2 cut(s)	27, 171
PfeI	GAWTC	4 cut(s)	235, 299, 403, 955
PkrI	GCNGC	4 cut(s)	529, 568, 571, 919
PleI	GAGTC	3 cut(s)	12, 820, 1297
PmaCI	CACGTG	1 cut(s)	42
PmlI	CACGTG	1 cut(s)	42
PpsI	GAGTC	3 cut(s)	12, 820, 1297
Ppu21I	YACGTR	1 cut(s)	42
PsiI	TTATAA	1 cut(s)	615
PspCI	CACGTG	1 cut(s)	42
PspPI	GGNCC	3 cut(s)	410, 876, 936
PsuI	RGATCY	2 cut(s)	133, 187
RsaI	GTAC	4 cut(s)	38, 46, 227, 1110
RsaNI	GTAC	4 cut(s)	37, 45, 226, 1109
SapI	GCTCTTC	1 cut(s)	987
SaqAI	TTAA	5 cut(s)	195, 201, 489, 518, 1014
SatI	GCNGC	4 cut(s)	528, 567, 570, 918
Sau96I	GGNCC	3 cut(s)	410, 876, 936
SchI	GAGTC	3 cut(s)	12, 821, 1297
SduI	GDGCHC	1 cut(s)	982
SfaNI	GCATC	1 cut(s)	1308
SfuI	TTCGAA	1 cut(s)	174
SinI	GGWCC	2 cut(s)	410, 876
SmlI	CTYRAG	1 cut(s)	1013
SmoI	CTYRAG	1 cut(s)	1013
Sse9I	AATT	2 cut(s)	616, 1088
SsiI	CCGC	6 cut(s)	398, 578, 917, 1214, 1220, 1279
SspMI	CTAG	1 cut(s)	98
StyI	CCWWGG	1 cut(s)	97
TaaI	ACNGT	6 cut(s)	181, 284, 414, 1052, 1123, 1271
TaiI	ACGT	1 cut(s)	44
TaqI	TCGA	8 cut(s)	21, 30, 117, 141, 165, 174, 1156, 1238
TasI	AATT	2 cut(s)	616, 1088
TatI	WGTACW	3 cut(s)	44, 225, 1108
TauI	GCSGC	1 cut(s)	920
TfiI	GAWTC	4 cut(s)	235, 299, 403, 955
Tru1I	TTAA	5 cut(s)	195, 201, 489, 518, 1014
Tru9I	TTAA	5 cut(s)	195, 201, 489, 518, 1014
TscAI	CASTG	1 cut(s)	1126
TseFI	GTSAC	3 cut(s)	181, 278, 1300
TseI	GCWGC	3 cut(s)	527, 566, 569
Tsp45I	GTSAC	3 cut(s)	181, 278, 1300
TspDTI	ATGAA	3 cut(s)	75, 103, 138
TspGWI	ACGGA	6 cut(s)	24, 50, 200, 201, 497, 641
TspRI	CASTG	1 cut(s)	1126
Vha464I	CTTAAG	1 cut(s)	1013
VpaK11BI	GGWCC	2 cut(s)	410, 876
XapI	RAATTY	1 cut(s)	1088
XmaJI	CCTAGG	1 cut(s)	97
XmiI	GTMKAC	2 cut(s)	344, 1209
XspI	CTAG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.