Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0010912

Physical Location & Seq

Genomic Coordinates Forward (+)

49554446 .. 49554796

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0383300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGCCTCCATAGATGTCGTCACAGCAAGCTTTGCTGCTCGTCTTGATCTCGCAGCGGGTGGTAGCACTCCGAATCTGGGAAAGATTGGAGGTGGTCCTGTGTGCAGGTCCTCCCAATCTTTTCTACTTGGCAAACCTTTGATTGAGGATGACAATGATGTGCCTCTTATCACTCTGAAGAAGAAGATGGGTAGACCGCCGGAAGCAAGAACAAGGGCCAACGTCCCAGTAACTGCAATTGGAGGTTCAGTTTCTAGCCCTAGACTCCTAGAGATAAGGTCAAAGGAAAGCCTTAAGCTTTCCTGGTCTCTTGCCTACCACTTGAAATTGGGTCTTCTTAGTTTACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005911 GO:0006457 GO:0006950 GO:0006986 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009506 GO:0009605 GO:0009607 GO:0009628 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0030054 GO:0033554 GO:0034605 GO:0034620 GO:0035966 GO:0035967 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055044 GO:0070417 GO:0070887 GO:0071310 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG

Protein Analysis

116

Amino Acids

12.19

Weight (kDa)

9.91

Isoelectric Point (pI)

52.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010912)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62390
fragaria_vesca	FvH4_7g27600 FvH4_7g27600
prunus_persica	Prupe.2G277700_v2.0.a1
pyrus_communis	pycom01g19380 pycom01g19390 pycom07g22700
rosa_chinensis	RchiOBHm_Chr1g0374461
rosa_laevigata	RLG00000026735
rosa_multiflora	Rmu_sc0011139.1_g000005 Rmu_sc0016220.1_g000001 Rmu_sc0017667.1_g000001 Rmu_ssc0000007.1_g000007
rosa_roxburghii	Rroxscaffold_4G00283460
rosa_rugosa	Rorug01G0383300
rosa_samantha	Rh1AG394200 Rh1BG358800 Rh1CG371800 Rh1DG389400
rosa_wichuraiana	Rw1G034200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	96
AccI	GTMKAC	1 cut(s)	193
AciI	CCGC	2 cut(s)	56, 197
AcuI	CTGAAG	1 cut(s)	197
AfiI	CCNNNNNNNGG	1 cut(s)	77
AflII	CTTAAG	1 cut(s)	293
AgsI	TTSAA	1 cut(s)	325
AjnI	CCWGG	1 cut(s)	302
AluBI	AGCT	2 cut(s)	30, 298
AluI	AGCT	2 cut(s)	30, 298
Alw26I	GTCTC	1 cut(s)	312
AlwNI	CAGNNNCTG	1 cut(s)	233
AoxI	GGCC	2 cut(s)	3, 216
ApeKI	GCWGC	2 cut(s)	35, 53
AspS9I	GGNCC	3 cut(s)	95, 108, 216
AvaII	GGWCC	2 cut(s)	95, 108
BbsI	GAAGAC	1 cut(s)	326
BbvI	GCAGC	2 cut(s)	22, 65
BccI	CCATC	1 cut(s)	181
BciT130I	CCWGG	1 cut(s)	304
BcoDI	GTCTC	1 cut(s)	312
BfaI	CTAG	3 cut(s)	255, 261, 269
BfrI	CTTAAG	1 cut(s)	293
BfuAI	ACCTGC	1 cut(s)	96
BisI	GCNGC	2 cut(s)	36, 54
BlsI	GCNGC	2 cut(s)	37, 55
Bme1390I	CCNGG	1 cut(s)	304
Bme18I	GGWCC	2 cut(s)	95, 108
BmgT120I	GGNCC	3 cut(s)	95, 108, 216
BmrFI	CCNGG	1 cut(s)	304
BmrI	ACTGGG	1 cut(s)	221
BmuI	ACTGGG	1 cut(s)	221
BpiI	GAAGAC	1 cut(s)	326
BsaI	GGTCTC	1 cut(s)	312
BsaXI	ACNNNNNCTCC	2 cut(s)	234, 264
Bsc4I	CCNNNNNNNGG	1 cut(s)	77
Bse1I	ACTGG	1 cut(s)	227
BseBI	CCWGG	1 cut(s)	304
BseGI	GGATG	1 cut(s)	154
BseLI	CCNNNNNNNGG	1 cut(s)	77
BseNI	ACTGG	1 cut(s)	227
BseXI	GCAGC	2 cut(s)	22, 65
BsgI	GTGCAG	1 cut(s)	124
BshFI	GGCC	2 cut(s)	5, 218
BsiSI	CCGG	1 cut(s)	200
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	1 cut(s)	77
BsmAI	GTCTC	1 cut(s)	312
BsmFI	GGGAC	1 cut(s)	209
BsnI	GGCC	2 cut(s)	5, 218
Bso31I	GGTCTC	1 cut(s)	312
Bsp143I	GATC	1 cut(s)	46
BspACI	CCGC	2 cut(s)	56, 197
BspANI	GGCC	2 cut(s)	5, 218
BspMI	ACCTGC	1 cut(s)	96
BspTI	CTTAAG	1 cut(s)	293
BspTNI	GGTCTC	1 cut(s)	312
BsrI	ACTGG	1 cut(s)	227
BssMI	GATC	1 cut(s)	46
Bst2UI	CCWGG	1 cut(s)	304
BstAFI	CTTAAG	1 cut(s)	293
BstAPI	GCANNNNNTGC	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	28
BstDEI	CTNAG	1 cut(s)	338
BstF5I	GGATG	1 cut(s)	154
BstKTI	GATC	1 cut(s)	49
BstMAI	GTCTC	1 cut(s)	312
BstMBI	GATC	1 cut(s)	46
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstNI	CCWGG	1 cut(s)	304
BstSCI	CCNGG	1 cut(s)	302
BstV1I	GCAGC	2 cut(s)	22, 65
BstV2I	GAAGAC	1 cut(s)	326
BsuRI	GGCC	2 cut(s)	5, 218
BtsCI	GGATG	1 cut(s)	154
BveI	ACCTGC	1 cut(s)	96
Cac8I	GCNNGC	1 cut(s)	28
CaiI	CAGNNNCTG	1 cut(s)	233
Cfr13I	GGNCC	3 cut(s)	95, 108, 216
CviJI	RGCY	6 cut(s)	5, 30, 218, 258, 291, 298
CviKI_1	RGCY	6 cut(s)	5, 30, 218, 258, 291, 298
DdeI	CTNAG	1 cut(s)	338
DpnI	GATC	1 cut(s)	48
DpnII	GATC	1 cut(s)	46
Eco31I	GGTCTC	1 cut(s)	312
Eco47I	GGWCC	2 cut(s)	95, 108
Eco57I	CTGAAG	1 cut(s)	197
EcoO109I	RGGNCCY	1 cut(s)	108
EcoRII	CCWGG	1 cut(s)	302
FaiI	YATR	1 cut(s)	11
FaqI	GGGAC	1 cut(s)	209
FauI	CCCGC	1 cut(s)	49
FblI	GTMKAC	1 cut(s)	193
Fnu4HI	GCNGC	2 cut(s)	36, 54
FokI	GGATG	1 cut(s)	161
Fsp4HI	GCNGC	2 cut(s)	36, 54
FspBI	CTAG	3 cut(s)	255, 261, 269
GluI	GCNGC	2 cut(s)	36, 54
HaeIII	GGCC	2 cut(s)	5, 218
HapII	CCGG	1 cut(s)	200
HindIII	AAGCTT	2 cut(s)	28, 296
HinfI	GANTC	2 cut(s)	73, 264
HpaII	CCGG	1 cut(s)	200
Hpy166II	GTNNAC	2 cut(s)	194, 344
Hpy188I	TCNGA	2 cut(s)	72, 177
Hpy188III	TCNNGA	1 cut(s)	44
Hpy8I	GTNNAC	2 cut(s)	194, 344
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	2 cut(s)	105, 236
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
HpyF3I	CTNAG	1 cut(s)	338
HpySE526I	ACGT	1 cut(s)	222
Kzo9I	GATC	1 cut(s)	46
LpnPI	CCDG	7 cut(s)	62, 91, 111, 213, 240, 289, 316
Lsp1109I	GCAGC	2 cut(s)	22, 65
MaeI	CTAG	3 cut(s)	255, 261, 269
MaeII	ACGT	1 cut(s)	222
MaeIII	GTNAC	2 cut(s)	19, 229
MalI	GATC	1 cut(s)	48
MboI	GATC	1 cut(s)	46
MboII	GAAGA	4 cut(s)	190, 193, 196, 326
MfeI	CAATTG	1 cut(s)	237
MluCI	AATT	2 cut(s)	237, 326
MlyI	GAGTC	1 cut(s)	258
MnlI	CCTC	6 cut(s)	16, 83, 121, 139, 174, 236
MseI	TTAA	1 cut(s)	294
MspA1I	CMGCKG	1 cut(s)	56
MspCI	CTTAAG	1 cut(s)	293
MspI	CCGG	1 cut(s)	200
MspR9I	CCNGG	1 cut(s)	304
MunI	CAATTG	1 cut(s)	237
MvaI	CCWGG	1 cut(s)	304
MwoI	GCNNNNNNNGC	1 cut(s)	32
NdeII	GATC	1 cut(s)	46
NmuCI	GTSAC	1 cut(s)	19
PfeI	GAWTC	1 cut(s)	73
PkrI	GCNGC	2 cut(s)	37, 55
PleI	GAGTC	1 cut(s)	258
PpsI	GAGTC	1 cut(s)	258
PpuMI	RGGWCCY	1 cut(s)	108
Psp5II	RGGWCCY	1 cut(s)	108
Psp6I	CCWGG	1 cut(s)	302
PspGI	CCWGG	1 cut(s)	302
PspPI	GGNCC	3 cut(s)	95, 108, 216
PspPPI	RGGWCCY	1 cut(s)	108
PstNI	CAGNNNCTG	1 cut(s)	233
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	2 cut(s)	36, 54
Sau3AI	GATC	1 cut(s)	46
Sau96I	GGNCC	3 cut(s)	95, 108, 216
SchI	GAGTC	1 cut(s)	258
ScrFI	CCNGG	1 cut(s)	304
SetI	ASST	8 cut(s)	32, 94, 110, 139, 225, 247, 281, 300
SinI	GGWCC	2 cut(s)	95, 108
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
Sse9I	AATT	2 cut(s)	237, 326
SsiI	CCGC	2 cut(s)	56, 197
SspMI	CTAG	3 cut(s)	255, 261, 269
StyD4I	CCNGG	1 cut(s)	302
TaiI	ACGT	1 cut(s)	225
TasI	AATT	2 cut(s)	237, 326
TfiI	GAWTC	1 cut(s)	73
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	2 cut(s)	35, 53
Tsp45I	GTSAC	1 cut(s)	19
Vha464I	CTTAAG	1 cut(s)	293
VpaK11BI	GGWCC	2 cut(s)	95, 108
XmiI	GTMKAC	1 cut(s)	193
XspI	CTAG	3 cut(s)	255, 261, 269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.