Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016220.1

Orthogroup ID

OG0010912

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 419

Gene Structure 418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016220.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 418 bp

atgagctggctcaggagaatcgacctcatcgagccctactactactgcccgccgccgccggcggttctaatccgcgagacctccattttcgccgccgcgccgaaactcccttcgtttttcgaagaggtgatggaggaggatttcgagctcggatacgcattggaccttctgtgccctagccccgtcaaaacgccgtcgcttttgtcctacaagctgattcagcgcgtggagaggctcggaggcgagctctacttgcagagcctgagcgaccgagtcactgagctggagtcgcgattcgatcgcctcgcgaagatcaaggccgccgccgccggacttggcgatcggaagtacacgtacacggcggagatcaaggcgccggagaagaagtacatgtggacgacggagatcaaggagggga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005911 GO:0006457 GO:0006950 GO:0006986 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009506 GO:0009605 GO:0009607 GO:0009628 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0030054 GO:0033554 GO:0034605 GO:0034620 GO:0035966 GO:0035967 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055044 GO:0070417 GO:0070887 GO:0071310 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG

Protein Analysis

139

Amino Acids

15.96

Weight (kDa)

5.34

Isoelectric Point (pI)

64.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010912)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62390
fragaria_vesca	FvH4_7g27600 FvH4_7g27600
prunus_persica	Prupe.2G277700_v2.0.a1
pyrus_communis	pycom01g19380 pycom01g19390 pycom07g22700
rosa_chinensis	RchiOBHm_Chr1g0374461
rosa_laevigata	RLG00000026735
rosa_multiflora	Rmu_sc0011139.1_g000005 Rmu_sc0016220.1_g000001 Rmu_sc0017667.1_g000001 Rmu_ssc0000007.1_g000007
rosa_roxburghii	Rroxscaffold_4G00283460
rosa_rugosa	Rorug01G0383300
rosa_samantha	Rh1AG394200 Rh1BG358800 Rh1CG371800 Rh1DG389400
rosa_wichuraiana	Rw1G034200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	373
AccII	CGCG	5 cut(s)	75, 98, 225, 292, 308
AcyI	GRCGYC	1 cut(s)	374
AfaI	GTAC	3 cut(s)	350, 356, 389
AflIII	ACRYGT	2 cut(s)	351, 390
AluBI	AGCT	5 cut(s)	6, 148, 214, 247, 283
AluI	AGCT	5 cut(s)	6, 148, 214, 247, 283
Alw21I	GWGCWC	2 cut(s)	150, 249
Alw26I	GTCTC	1 cut(s)	71
AlwNI	CAGNNNCTG	1 cut(s)	262
AoxI	GGCC	1 cut(s)	318
AspLEI	GCGC	3 cut(s)	100, 225, 376
AspS9I	GGNCC	1 cut(s)	163
AsuHPI	GGTGA	1 cut(s)	139
AsuII	TTCGAA	1 cut(s)	120
AvaII	GGWCC	1 cut(s)	163
BaeGI	GKGCMC	1 cut(s)	176
BanI	GGYRCC	1 cut(s)	373
BanII	GRGCYC	3 cut(s)	36, 150, 249
BarI	GAAGNNNNNNTAC	2 cut(s)	338, 370
Bbv12I	GWGCWC	2 cut(s)	150, 249
BccI	CCATC	1 cut(s)	124
BceAI	ACGGC	2 cut(s)	178, 375
BciVI	GTATCC	1 cut(s)	146
BcoDI	GTCTC	1 cut(s)	71
BfaI	CTAG	1 cut(s)	177
BfoI	RGCGCY	1 cut(s)	377
BfuI	GTATCC	1 cut(s)	146
BisI	GCNGC	7 cut(s)	53, 56, 93, 96, 321, 324, 327
BlsI	GCNGC	7 cut(s)	54, 57, 94, 97, 322, 325, 328
Bme18I	GGWCC	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	163
BmiI	GGNNCC	1 cut(s)	375
BplI	GAGNNNNNCTC	2 cut(s)	231, 263
BpmI	CTGGAG	1 cut(s)	305
Bpu10I	CCTNAGC	2 cut(s)	11, 263
Bpu14I	TTCGAA	1 cut(s)	120
BsaAI	YACGTR	1 cut(s)	354
BsaHI	GRCGYC	1 cut(s)	374
BsaI	GGTCTC	1 cut(s)	71
BsaXI	ACNNNNNCTCC	2 cut(s)	371, 401
Bse118I	RCCGGY	1 cut(s)	58
BseMII	CTCAG	3 cut(s)	25, 254, 270
BseRI	GAGGAG	1 cut(s)	149
BseSI	GKGCMC	1 cut(s)	176
Bsh1236I	CGCG	5 cut(s)	75, 98, 225, 292, 308
Bsh1285I	CGRYCG	3 cut(s)	271, 301, 343
BshFI	GGCC	1 cut(s)	320
BshNI	GGYRCC	1 cut(s)	373
BsiEI	CGRYCG	3 cut(s)	271, 301, 343
BsiHKAI	GWGCWC	2 cut(s)	150, 249
BsiSI	CCGG	3 cut(s)	59, 330, 377
BsmAI	GTCTC	1 cut(s)	71
BsnI	GGCC	1 cut(s)	320
Bso31I	GGTCTC	1 cut(s)	71
Bsp119I	TTCGAA	1 cut(s)	120
Bsp1286I	GDGCHC	4 cut(s)	36, 150, 176, 249
Bsp143I	GATC	5 cut(s)	298, 312, 340, 366, 405
Bsp68I	TCGCGA	2 cut(s)	292, 308
BspANI	GGCC	1 cut(s)	320
BspCNI	CTCAG	3 cut(s)	24, 255, 271
BspFNI	CGCG	5 cut(s)	75, 98, 225, 292, 308
BspLI	GGNNCC	1 cut(s)	375
BspT104I	TTCGAA	1 cut(s)	120
BspT107I	GGYRCC	1 cut(s)	373
BspTNI	GGTCTC	1 cut(s)	71
BsrFI	RCCGGY	1 cut(s)	58
BssAI	RCCGGY	1 cut(s)	58
BssMI	GATC	5 cut(s)	298, 312, 340, 366, 405
BssNI	GRCGYC	1 cut(s)	374
Bst6I	CTCTTC	1 cut(s)	117
BstACI	GRCGYC	1 cut(s)	374
BstBAI	YACGTR	1 cut(s)	354
BstBI	TTCGAA	1 cut(s)	120
BstC8I	GCNNGC	4 cut(s)	8, 50, 60, 245
BstDEI	CTNAG	3 cut(s)	11, 263, 279
BstFNI	CGCG	5 cut(s)	75, 98, 225, 292, 308
BstH2I	RGCGCY	1 cut(s)	377
BstHHI	GCGC	3 cut(s)	100, 225, 376
BstKTI	GATC	5 cut(s)	301, 315, 343, 369, 408
BstMAI	GTCTC	1 cut(s)	71
BstMBI	GATC	5 cut(s)	298, 312, 340, 366, 405
BstMCI	CGRYCG	3 cut(s)	271, 301, 343
BstMWI	GCNNNNNNNGC	4 cut(s)	220, 253, 289, 326
BstNSI	RCATGY	1 cut(s)	394
BstSLI	GKGCMC	1 cut(s)	176
BstUI	CGCG	5 cut(s)	75, 98, 225, 292, 308
BsuI	GTATCC	1 cut(s)	146
BsuRI	GGCC	1 cut(s)	320
BtsIMutI	CAGTG	1 cut(s)	276
BtuMI	TCGCGA	2 cut(s)	292, 308
Cac8I	GCNNGC	4 cut(s)	8, 50, 60, 245
CaiI	CAGNNNCTG	1 cut(s)	262
CfoI	GCGC	3 cut(s)	100, 225, 376
Cfr10I	RCCGGY	1 cut(s)	58
Cfr13I	GGNCC	1 cut(s)	163
Csp6I	GTAC	3 cut(s)	349, 355, 388
CviAII	CATG	1 cut(s)	391
CviQI	GTAC	3 cut(s)	349, 355, 388
DdeI	CTNAG	3 cut(s)	11, 263, 279
DinI	GGCGCC	1 cut(s)	375
DpnI	GATC	5 cut(s)	300, 314, 342, 368, 407
DpnII	GATC	5 cut(s)	298, 312, 340, 366, 405
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
EciI	GGCGGA	1 cut(s)	377
Ecl136II	GAGCTC	2 cut(s)	148, 247
Eco24I	GRGCYC	3 cut(s)	36, 150, 249
Eco31I	GGTCTC	1 cut(s)	71
Eco47I	GGWCC	1 cut(s)	163
Eco53kI	GAGCTC	2 cut(s)	148, 247
EcoICRI	GAGCTC	2 cut(s)	148, 247
EcoT38I	GRGCYC	3 cut(s)	36, 150, 249
EgeI	GGCGCC	1 cut(s)	375
EheI	GGCGCC	1 cut(s)	375
FaeI	CATG	1 cut(s)	394
FaiI	YATR	1 cut(s)	392
FatI	CATG	1 cut(s)	390
FauI	CCCGC	1 cut(s)	57
Fnu4HI	GCNGC	7 cut(s)	53, 56, 93, 96, 321, 324, 327
FriOI	GRGCYC	3 cut(s)	36, 150, 249
Fsp4HI	GCNGC	7 cut(s)	53, 56, 93, 96, 321, 324, 327
FspBI	CTAG	1 cut(s)	177
GlaI	GCGC	3 cut(s)	99, 224, 375
GluI	GCNGC	7 cut(s)	53, 56, 93, 96, 321, 324, 327
GsuI	CTGGAG	1 cut(s)	305
HaeII	RGCGCY	1 cut(s)	377
HaeIII	GGCC	1 cut(s)	320
HapII	CCGG	3 cut(s)	59, 330, 377
HhaI	GCGC	3 cut(s)	100, 225, 376
Hin1I	GRCGYC	1 cut(s)	374
Hin1II	CATG	1 cut(s)	394
Hin6I	GCGC	3 cut(s)	98, 223, 374
HinP1I	GCGC	3 cut(s)	98, 223, 374
HinfI	GANTC	5 cut(s)	18, 217, 273, 287, 294
HpaII	CCGG	3 cut(s)	59, 330, 377
HphI	GGTGA	1 cut(s)	139
Hpy166II	GTNNAC	3 cut(s)	351, 357, 396
Hpy188I	TCNGA	3 cut(s)	152, 239, 345
Hpy188III	TCNNGA	3 cut(s)	13, 291, 307
Hpy8I	GTNNAC	3 cut(s)	351, 357, 396
Hpy99I	CGWCG	2 cut(s)	199, 403
HpyAV	CCTTC	2 cut(s)	120, 176
HpyCH4IV	ACGT	1 cut(s)	353
HpyCH4V	TGCA	1 cut(s)	256
HpyF10VI	GCNNNNNNNGC	4 cut(s)	220, 253, 289, 326
HpyF3I	CTNAG	3 cut(s)	11, 263, 279
HpySE526I	ACGT	1 cut(s)	353
Hsp92I	GRCGYC	1 cut(s)	374
Hsp92II	CATG	1 cut(s)	394
HspAI	GCGC	3 cut(s)	98, 223, 374
KasI	GGCGCC	1 cut(s)	373
KroI	GCCGGC	1 cut(s)	58
KroNI	GCCGGC	1 cut(s)	60
Kzo9I	GATC	5 cut(s)	298, 312, 340, 366, 405
LpnPI	CCDG	5 cut(s)	72, 269, 275, 343, 390
MaeI	CTAG	1 cut(s)	177
MaeII	ACGT	1 cut(s)	353
MaeIII	GTNAC	1 cut(s)	274
MalI	GATC	5 cut(s)	300, 314, 342, 368, 407
MboI	GATC	5 cut(s)	298, 312, 340, 366, 405
MboII	GAAGA	3 cut(s)	134, 322, 394
MhlI	GDGCHC	4 cut(s)	36, 150, 176, 249
Mly113I	GGCGCC	1 cut(s)	374
MlyI	GAGTC	2 cut(s)	282, 296
MnlI	CCTC	9 cut(s)	35, 91, 118, 127, 130, 225, 233, 314, 406
MreI	CGCCGGCG	1 cut(s)	58
MroNI	GCCGGC	1 cut(s)	58
MspI	CCGG	3 cut(s)	59, 330, 377
MvnI	CGCG	5 cut(s)	75, 98, 225, 292, 308
MwoI	GCNNNNNNNGC	4 cut(s)	220, 253, 289, 326
NaeI	GCCGGC	1 cut(s)	60
NarI	GGCGCC	1 cut(s)	374
NdeII	GATC	5 cut(s)	298, 312, 340, 366, 405
NgoMIV	GCCGGC	1 cut(s)	58
NlaIII	CATG	1 cut(s)	394
NlaIV	GGNNCC	1 cut(s)	375
NmuCI	GTSAC	1 cut(s)	274
NruI	TCGCGA	2 cut(s)	292, 308
NspI	RCATGY	1 cut(s)	394
NspV	TTCGAA	1 cut(s)	120
PciI	ACATGT	1 cut(s)	390
PcsI	WCGNNNNNNNCGW	1 cut(s)	27
PdiI	GCCGGC	1 cut(s)	60
PfeI	GAWTC	3 cut(s)	18, 217, 294
PflFI	GACNNNGTC	1 cut(s)	272
PkrI	GCNGC	7 cut(s)	54, 57, 94, 97, 322, 325, 328
Ple19I	CGATCG	2 cut(s)	301, 343
PleI	GAGTC	2 cut(s)	281, 295
PluTI	GGCGCC	1 cut(s)	377
PpsI	GAGTC	2 cut(s)	281, 295
Ppu21I	YACGTR	1 cut(s)	354
PscI	ACATGT	1 cut(s)	390
Psp124BI	GAGCTC	2 cut(s)	150, 249
PspN4I	GGNNCC	1 cut(s)	375
PspPI	GGNCC	1 cut(s)	163
PstNI	CAGNNNCTG	1 cut(s)	262
PsyI	GACNNNGTC	1 cut(s)	272
PvuI	CGATCG	2 cut(s)	301, 343
RruI	TCGCGA	2 cut(s)	292, 308
RsaI	GTAC	3 cut(s)	350, 356, 389
RsaNI	GTAC	3 cut(s)	349, 355, 388
SacI	GAGCTC	2 cut(s)	150, 249
SatI	GCNGC	7 cut(s)	53, 56, 93, 96, 321, 324, 327
Sau3AI	GATC	5 cut(s)	298, 312, 340, 366, 405
Sau96I	GGNCC	1 cut(s)	163
SchI	GAGTC	2 cut(s)	282, 296
SduI	GDGCHC	4 cut(s)	36, 150, 176, 249
SfoI	GGCGCC	1 cut(s)	375
SfuI	TTCGAA	1 cut(s)	120
SgrAI	CRCCGGYG	1 cut(s)	58
SinI	GGWCC	1 cut(s)	163
SspDI	GGCGCC	1 cut(s)	373
SspMI	CTAG	1 cut(s)	177
SstI	GAGCTC	2 cut(s)	150, 249
TaiI	ACGT	1 cut(s)	356
TaqI	TCGA	5 cut(s)	21, 30, 120, 144, 297
TaqII	GACCGA	1 cut(s)	285
TatI	WGTACW	2 cut(s)	348, 387
TauI	GCSGC	7 cut(s)	55, 58, 95, 98, 323, 326, 329
TfiI	GAWTC	3 cut(s)	18, 217, 294
TscAI	CASTG	1 cut(s)	283
TseFI	GTSAC	1 cut(s)	274
Tsp45I	GTSAC	1 cut(s)	274
TspGWI	ACGGA	1 cut(s)	416
TspRI	CASTG	1 cut(s)	283
Tth111I	GACNNNGTC	1 cut(s)	272
VpaK11BI	GGWCC	1 cut(s)	163
XceI	RCATGY	1 cut(s)	394
XspI	CTAG	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.