Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017667.1

Orthogroup ID

OG0010912

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 422

Gene Structure 421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017667.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 421 bp

atgagctggctcaggagaatcgacctcatcgagccctactactactgcccgccgccgccggcggttctcgtccgcgagacctccattttcgccgccgcgccgaaactcccttcgtttttcgaagaggtgatggaggaggatttcgagctcggatacgcattggaccttctgtgccctagccccgtcaaaacgccgtcgcttttgtcctacaagctgattcagcgcgtggagaggctcggaggcgagctctacttgcagagcctgagcgaccgagtcactgagctggagtcgcgattcgatcgcctcgcgaagatcaaggcggccgccgccgccggccttgtcgatcggaagtacacgtacacggcggagatcaaggcgccggagaagaagtacatgtggacgacggagatcaaggagggga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005911 GO:0006457 GO:0006950 GO:0006986 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009506 GO:0009605 GO:0009607 GO:0009628 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0030054 GO:0033554 GO:0034605 GO:0034620 GO:0035966 GO:0035967 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055044 GO:0070417 GO:0070887 GO:0071310 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG

Protein Analysis

140

Amino Acids

16.06

Weight (kDa)

5.34

Isoelectric Point (pI)

63.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010912)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62390
fragaria_vesca	FvH4_7g27600 FvH4_7g27600
prunus_persica	Prupe.2G277700_v2.0.a1
pyrus_communis	pycom01g19380 pycom01g19390 pycom07g22700
rosa_chinensis	RchiOBHm_Chr1g0374461
rosa_laevigata	RLG00000026735
rosa_multiflora	Rmu_sc0011139.1_g000005 Rmu_sc0016220.1_g000001 Rmu_sc0017667.1_g000001 Rmu_ssc0000007.1_g000007
rosa_roxburghii	Rroxscaffold_4G00283460
rosa_rugosa	Rorug01G0383300
rosa_samantha	Rh1AG394200 Rh1BG358800 Rh1CG371800 Rh1DG389400
rosa_wichuraiana	Rw1G034200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	376
AccII	CGCG	5 cut(s)	75, 98, 225, 292, 308
AcoI	YGGCCR	1 cut(s)	321
AcyI	GRCGYC	1 cut(s)	377
AfaI	GTAC	3 cut(s)	353, 359, 392
AflIII	ACRYGT	2 cut(s)	354, 393
AluBI	AGCT	5 cut(s)	6, 148, 214, 247, 283
AluI	AGCT	5 cut(s)	6, 148, 214, 247, 283
Alw21I	GWGCWC	2 cut(s)	150, 249
Alw26I	GTCTC	1 cut(s)	71
AlwNI	CAGNNNCTG	1 cut(s)	262
AoxI	GGCC	2 cut(s)	321, 334
AspLEI	GCGC	3 cut(s)	100, 225, 379
AspS9I	GGNCC	1 cut(s)	163
AsuHPI	GGTGA	1 cut(s)	139
AsuII	TTCGAA	1 cut(s)	120
AvaII	GGWCC	1 cut(s)	163
BaeGI	GKGCMC	1 cut(s)	176
BanI	GGYRCC	1 cut(s)	376
BanII	GRGCYC	3 cut(s)	36, 150, 249
BarI	GAAGNNNNNNTAC	2 cut(s)	341, 373
Bbv12I	GWGCWC	2 cut(s)	150, 249
BccI	CCATC	1 cut(s)	124
BceAI	ACGGC	2 cut(s)	178, 378
BciVI	GTATCC	1 cut(s)	146
BcoDI	GTCTC	1 cut(s)	71
BfaI	CTAG	1 cut(s)	177
BfoI	RGCGCY	1 cut(s)	380
BfuI	GTATCC	1 cut(s)	146
BisI	GCNGC	8 cut(s)	53, 56, 93, 96, 321, 324, 327, 330
BlsI	GCNGC	8 cut(s)	54, 57, 94, 97, 322, 325, 328, 331
Bme18I	GGWCC	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	163
BmiI	GGNNCC	1 cut(s)	378
BplI	GAGNNNNNCTC	2 cut(s)	231, 263
BpmI	CTGGAG	1 cut(s)	305
Bpu10I	CCTNAGC	2 cut(s)	11, 263
Bpu14I	TTCGAA	1 cut(s)	120
BsaAI	YACGTR	1 cut(s)	357
BsaHI	GRCGYC	1 cut(s)	377
BsaI	GGTCTC	1 cut(s)	71
BsaXI	ACNNNNNCTCC	2 cut(s)	374, 404
Bse118I	RCCGGY	2 cut(s)	58, 332
BseMII	CTCAG	3 cut(s)	25, 254, 270
BseRI	GAGGAG	1 cut(s)	149
BseSI	GKGCMC	1 cut(s)	176
BseX3I	CGGCCG	1 cut(s)	321
Bsh1236I	CGCG	5 cut(s)	75, 98, 225, 292, 308
Bsh1285I	CGRYCG	4 cut(s)	271, 301, 324, 346
BshFI	GGCC	2 cut(s)	323, 336
BshNI	GGYRCC	1 cut(s)	376
BsiEI	CGRYCG	4 cut(s)	271, 301, 324, 346
BsiHKAI	GWGCWC	2 cut(s)	150, 249
BsiSI	CCGG	3 cut(s)	59, 333, 380
BsmAI	GTCTC	1 cut(s)	71
BsnI	GGCC	2 cut(s)	323, 336
Bso31I	GGTCTC	1 cut(s)	71
Bsp119I	TTCGAA	1 cut(s)	120
Bsp1286I	GDGCHC	4 cut(s)	36, 150, 176, 249
Bsp143I	GATC	5 cut(s)	298, 312, 343, 369, 408
Bsp68I	TCGCGA	2 cut(s)	292, 308
BspANI	GGCC	2 cut(s)	323, 336
BspCNI	CTCAG	3 cut(s)	24, 255, 271
BspFNI	CGCG	5 cut(s)	75, 98, 225, 292, 308
BspLI	GGNNCC	1 cut(s)	378
BspT104I	TTCGAA	1 cut(s)	120
BspT107I	GGYRCC	1 cut(s)	376
BspTNI	GGTCTC	1 cut(s)	71
BsrFI	RCCGGY	2 cut(s)	58, 332
BssAI	RCCGGY	2 cut(s)	58, 332
BssMI	GATC	5 cut(s)	298, 312, 343, 369, 408
BssNI	GRCGYC	1 cut(s)	377
Bst6I	CTCTTC	1 cut(s)	117
BstACI	GRCGYC	1 cut(s)	377
BstBAI	YACGTR	1 cut(s)	357
BstBI	TTCGAA	1 cut(s)	120
BstC8I	GCNNGC	5 cut(s)	8, 50, 60, 245, 334
BstDEI	CTNAG	3 cut(s)	11, 263, 279
BstFNI	CGCG	5 cut(s)	75, 98, 225, 292, 308
BstH2I	RGCGCY	1 cut(s)	380
BstHHI	GCGC	3 cut(s)	100, 225, 379
BstKTI	GATC	5 cut(s)	301, 315, 346, 372, 411
BstMAI	GTCTC	1 cut(s)	71
BstMBI	GATC	5 cut(s)	298, 312, 343, 369, 408
BstMCI	CGRYCG	4 cut(s)	271, 301, 324, 346
BstMWI	GCNNNNNNNGC	5 cut(s)	220, 253, 289, 326, 329
BstNSI	RCATGY	1 cut(s)	397
BstSLI	GKGCMC	1 cut(s)	176
BstUI	CGCG	5 cut(s)	75, 98, 225, 292, 308
BstZI	CGGCCG	1 cut(s)	321
BsuI	GTATCC	1 cut(s)	146
BsuRI	GGCC	2 cut(s)	323, 336
BtsIMutI	CAGTG	1 cut(s)	276
BtuMI	TCGCGA	2 cut(s)	292, 308
Cac8I	GCNNGC	5 cut(s)	8, 50, 60, 245, 334
CaiI	CAGNNNCTG	1 cut(s)	262
CciNI	GCGGCCGC	1 cut(s)	321
CfoI	GCGC	3 cut(s)	100, 225, 379
Cfr10I	RCCGGY	2 cut(s)	58, 332
Cfr13I	GGNCC	1 cut(s)	163
Csp6I	GTAC	3 cut(s)	352, 358, 391
CviAII	CATG	1 cut(s)	394
CviQI	GTAC	3 cut(s)	352, 358, 391
DdeI	CTNAG	3 cut(s)	11, 263, 279
DinI	GGCGCC	1 cut(s)	378
DpnI	GATC	5 cut(s)	300, 314, 345, 371, 410
DpnII	GATC	5 cut(s)	298, 312, 343, 369, 408
EaeI	YGGCCR	1 cut(s)	321
EagI	CGGCCG	1 cut(s)	321
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
EciI	GGCGGA	1 cut(s)	380
Ecl136II	GAGCTC	2 cut(s)	148, 247
EclXI	CGGCCG	1 cut(s)	321
Eco24I	GRGCYC	3 cut(s)	36, 150, 249
Eco31I	GGTCTC	1 cut(s)	71
Eco47I	GGWCC	1 cut(s)	163
Eco52I	CGGCCG	1 cut(s)	321
Eco53kI	GAGCTC	2 cut(s)	148, 247
EcoICRI	GAGCTC	2 cut(s)	148, 247
EcoT38I	GRGCYC	3 cut(s)	36, 150, 249
EgeI	GGCGCC	1 cut(s)	378
EheI	GGCGCC	1 cut(s)	378
FaeI	CATG	1 cut(s)	397
FaiI	YATR	1 cut(s)	395
FatI	CATG	1 cut(s)	393
FauI	CCCGC	1 cut(s)	57
Fnu4HI	GCNGC	8 cut(s)	53, 56, 93, 96, 321, 324, 327, 330
FriOI	GRGCYC	3 cut(s)	36, 150, 249
Fsp4HI	GCNGC	8 cut(s)	53, 56, 93, 96, 321, 324, 327, 330
FspBI	CTAG	1 cut(s)	177
GlaI	GCGC	3 cut(s)	99, 224, 378
GluI	GCNGC	8 cut(s)	53, 56, 93, 96, 321, 324, 327, 330
GsuI	CTGGAG	1 cut(s)	305
HaeII	RGCGCY	1 cut(s)	380
HaeIII	GGCC	2 cut(s)	323, 336
HapII	CCGG	3 cut(s)	59, 333, 380
HhaI	GCGC	3 cut(s)	100, 225, 379
Hin1I	GRCGYC	1 cut(s)	377
Hin1II	CATG	1 cut(s)	397
Hin6I	GCGC	3 cut(s)	98, 223, 377
HinP1I	GCGC	3 cut(s)	98, 223, 377
HinfI	GANTC	5 cut(s)	18, 217, 273, 287, 294
HpaII	CCGG	3 cut(s)	59, 333, 380
HphI	GGTGA	1 cut(s)	139
Hpy166II	GTNNAC	3 cut(s)	354, 360, 399
Hpy188I	TCNGA	3 cut(s)	152, 239, 348
Hpy188III	TCNNGA	3 cut(s)	13, 291, 307
Hpy8I	GTNNAC	3 cut(s)	354, 360, 399
Hpy99I	CGWCG	2 cut(s)	199, 406
HpyAV	CCTTC	2 cut(s)	120, 176
HpyCH4IV	ACGT	1 cut(s)	356
HpyCH4V	TGCA	1 cut(s)	256
HpyF10VI	GCNNNNNNNGC	5 cut(s)	220, 253, 289, 326, 329
HpyF3I	CTNAG	3 cut(s)	11, 263, 279
HpySE526I	ACGT	1 cut(s)	356
Hsp92I	GRCGYC	1 cut(s)	377
Hsp92II	CATG	1 cut(s)	397
HspAI	GCGC	3 cut(s)	98, 223, 377
KasI	GGCGCC	1 cut(s)	376
KroI	GCCGGC	2 cut(s)	58, 332
KroNI	GCCGGC	2 cut(s)	60, 334
Kzo9I	GATC	5 cut(s)	298, 312, 343, 369, 408
LpnPI	CCDG	5 cut(s)	72, 269, 275, 346, 393
MaeI	CTAG	1 cut(s)	177
MaeII	ACGT	1 cut(s)	356
MaeIII	GTNAC	1 cut(s)	274
MalI	GATC	5 cut(s)	300, 314, 345, 371, 410
MboI	GATC	5 cut(s)	298, 312, 343, 369, 408
MboII	GAAGA	3 cut(s)	134, 322, 397
MhlI	GDGCHC	4 cut(s)	36, 150, 176, 249
Mly113I	GGCGCC	1 cut(s)	377
MlyI	GAGTC	2 cut(s)	282, 296
MnlI	CCTC	9 cut(s)	35, 91, 118, 127, 130, 225, 233, 314, 409
MreI	CGCCGGCG	1 cut(s)	58
MroNI	GCCGGC	2 cut(s)	58, 332
MspI	CCGG	3 cut(s)	59, 333, 380
MvnI	CGCG	5 cut(s)	75, 98, 225, 292, 308
MwoI	GCNNNNNNNGC	5 cut(s)	220, 253, 289, 326, 329
NaeI	GCCGGC	2 cut(s)	60, 334
NarI	GGCGCC	1 cut(s)	377
NdeII	GATC	5 cut(s)	298, 312, 343, 369, 408
NgoMIV	GCCGGC	2 cut(s)	58, 332
NlaIII	CATG	1 cut(s)	397
NlaIV	GGNNCC	1 cut(s)	378
NmuCI	GTSAC	1 cut(s)	274
NotI	GCGGCCGC	1 cut(s)	321
NruI	TCGCGA	2 cut(s)	292, 308
NspI	RCATGY	1 cut(s)	397
NspV	TTCGAA	1 cut(s)	120
PciI	ACATGT	1 cut(s)	393
PcsI	WCGNNNNNNNCGW	1 cut(s)	27
PdiI	GCCGGC	2 cut(s)	60, 334
PfeI	GAWTC	3 cut(s)	18, 217, 294
PflFI	GACNNNGTC	1 cut(s)	272
PkrI	GCNGC	8 cut(s)	54, 57, 94, 97, 322, 325, 328, 331
Ple19I	CGATCG	2 cut(s)	301, 346
PleI	GAGTC	2 cut(s)	281, 295
PluTI	GGCGCC	1 cut(s)	380
PpsI	GAGTC	2 cut(s)	281, 295
Ppu21I	YACGTR	1 cut(s)	357
PscI	ACATGT	1 cut(s)	393
Psp124BI	GAGCTC	2 cut(s)	150, 249
PspN4I	GGNNCC	1 cut(s)	378
PspPI	GGNCC	1 cut(s)	163
PstNI	CAGNNNCTG	1 cut(s)	262
PsyI	GACNNNGTC	1 cut(s)	272
PvuI	CGATCG	2 cut(s)	301, 346
RruI	TCGCGA	2 cut(s)	292, 308
RsaI	GTAC	3 cut(s)	353, 359, 392
RsaNI	GTAC	3 cut(s)	352, 358, 391
SacI	GAGCTC	2 cut(s)	150, 249
SatI	GCNGC	8 cut(s)	53, 56, 93, 96, 321, 324, 327, 330
Sau3AI	GATC	5 cut(s)	298, 312, 343, 369, 408
Sau96I	GGNCC	1 cut(s)	163
SchI	GAGTC	2 cut(s)	282, 296
SduI	GDGCHC	4 cut(s)	36, 150, 176, 249
SfoI	GGCGCC	1 cut(s)	378
SfuI	TTCGAA	1 cut(s)	120
SgrAI	CRCCGGYG	1 cut(s)	58
SinI	GGWCC	1 cut(s)	163
SspDI	GGCGCC	1 cut(s)	376
SspMI	CTAG	1 cut(s)	177
SstI	GAGCTC	2 cut(s)	150, 249
TaiI	ACGT	1 cut(s)	359
TaqI	TCGA	6 cut(s)	21, 30, 120, 144, 297, 342
TaqII	GACCGA	1 cut(s)	285
TatI	WGTACW	2 cut(s)	351, 390
TauI	GCSGC	8 cut(s)	55, 58, 95, 98, 323, 326, 329, 332
TfiI	GAWTC	3 cut(s)	18, 217, 294
TscAI	CASTG	1 cut(s)	283
TseFI	GTSAC	1 cut(s)	274
Tsp45I	GTSAC	1 cut(s)	274
TspGWI	ACGGA	1 cut(s)	419
TspRI	CASTG	1 cut(s)	283
Tth111I	GACNNNGTC	1 cut(s)	272
VpaK11BI	GGWCC	1 cut(s)	163
XceI	RCATGY	1 cut(s)	397
XspI	CTAG	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.