Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011139.1

Orthogroup ID

OG0010912

Physical Location & Seq

Genomic Coordinates Forward (+)

19662 .. 22089

Gene Structure 2428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011139.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

atggggtccaatgctgacatggcagtaggccccagggatgatgtggcaatgggtcccaatgatgacgtggcgctcaggtggggtccacatgaaaatgaaaattccaaaattgcccctgcctctattttacctccaagcctagcgctgtcctcacgcacacataaacattcccacccaaatcacccgactcgttcagttgactcactccagatccagttcgccaagccctgctactactgccagccaccactggtggttctcatctacgaaacctccatttttgctactgcaccgaaactcccttcgttttttgaagaggtggtggaggaggacttcgaactcagatacgcattagacctgctgtgccctagccccgtcaaaaagccatcacttttgttctacaagctgattcaacacgtggagaggctcggaggggagctctacttgcagagcctcagcgaccaagtcactgagctggagtcgcgatttgatagcctcgcgaaaatcaaggccgccgaccttggccatctgaagtacacgtacatggcggagttcatggcgaggtttgagaagaagtacaggtggacgacggagatctctctctctctctctctaaaatcgactagaggtactgatcgcagaggaggcggtacttttggaggtggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005911 GO:0006457 GO:0006950 GO:0006986 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009506 GO:0009605 GO:0009607 GO:0009628 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0030054 GO:0033554 GO:0034605 GO:0034620 GO:0035966 GO:0035967 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055044 GO:0070417 GO:0070887 GO:0071310 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG

Protein Analysis

222

Amino Acids

24.82

Weight (kDa)

6.38

Isoelectric Point (pI)

51.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010912)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62390
fragaria_vesca	FvH4_7g27600 FvH4_7g27600
prunus_persica	Prupe.2G277700_v2.0.a1
pyrus_communis	pycom01g19380 pycom01g19390 pycom07g22700
rosa_chinensis	RchiOBHm_Chr1g0374461
rosa_laevigata	RLG00000026735
rosa_multiflora	Rmu_sc0011139.1_g000005 Rmu_sc0016220.1_g000001 Rmu_sc0017667.1_g000001 Rmu_ssc0000007.1_g000007
rosa_roxburghii	Rroxscaffold_4G00283460
rosa_rugosa	Rorug01G0383300
rosa_samantha	Rh1AG394200 Rh1BG358800 Rh1CG371800 Rh1DG389400
rosa_wichuraiana	Rw1G034200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	366
AccII	CGCG	2 cut(s)	484, 500
AciI	CCGC	3 cut(s)	513, 548, 648
AclWI	GGATC	1 cut(s)	205
AcoI	YGGCCR	1 cut(s)	523
AcsI	RAATTY	1 cut(s)	100
AcuI	CTGAAG	1 cut(s)	551
AcvI	CACGTG	1 cut(s)	418
AfaI	GTAC	5 cut(s)	536, 542, 578, 631, 652
AfeI	AGCGCT	1 cut(s)	144
AflIII	ACRYGT	2 cut(s)	415, 537
AgsI	TTSAA	2 cut(s)	314, 413
AjiI	CACGTC	1 cut(s)	67
AjnI	CCWGG	1 cut(s)	32
AluBI	AGCT	3 cut(s)	406, 439, 475
AluI	AGCT	3 cut(s)	406, 439, 475
Alw21I	GWGCWC	1 cut(s)	441
AlwI	GGATC	1 cut(s)	205
Aor51HI	AGCGCT	1 cut(s)	144
AoxI	GGCC	3 cut(s)	28, 510, 523
ApoI	RAATTY	1 cut(s)	100
AspLEI	GCGC	2 cut(s)	73, 145
AspS9I	GGNCC	4 cut(s)	6, 29, 53, 83
AsuHPI	GGTGA	1 cut(s)	173
AsuII	TTCGAA	1 cut(s)	336
AvaII	GGWCC	3 cut(s)	6, 53, 83
BaeGI	GKGCMC	1 cut(s)	368
BalI	TGGCCA	1 cut(s)	525
BanII	GRGCYC	1 cut(s)	441
BarI	GAAGNNNNNNTAC	2 cut(s)	524, 556
BbrPI	CACGTG	1 cut(s)	418
Bbv12I	GWGCWC	1 cut(s)	441
BbvCI	CCTCAGC	1 cut(s)	455
BccI	CCATC	2 cut(s)	394, 534
BciT130I	CCWGG	1 cut(s)	34
BfaI	CTAG	3 cut(s)	140, 369, 624
BfoI	RGCGCY	2 cut(s)	74, 146
BfuAI	ACCTGC	1 cut(s)	366
BglII	AGATCT	1 cut(s)	594
BisI	GCNGC	1 cut(s)	513
BlsI	GCNGC	1 cut(s)	514
Bme1390I	CCNGG	1 cut(s)	34
Bme18I	GGWCC	3 cut(s)	6, 53, 83
BmgBI	CACGTC	1 cut(s)	67
BmgT120I	GGNCC	4 cut(s)	6, 29, 53, 83
BmiI	GGNNCC	5 cut(s)	7, 31, 54, 55, 84
BmrFI	CCNGG	1 cut(s)	34
BplI	GAGNNNNNCTC	2 cut(s)	423, 455
BpmI	CTGGAG	2 cut(s)	191, 497
Bpu10I	CCTNAGC	2 cut(s)	74, 455
Bpu14I	TTCGAA	1 cut(s)	336
BsaAI	YACGTR	2 cut(s)	418, 540
BsaJI	CCNNGG	3 cut(s)	32, 33, 520
BsaXI	ACNNNNNCTCC	4 cut(s)	257, 282, 287, 312
Bse1I	ACTGG	2 cut(s)	214, 255
Bse3DI	GCAATG	1 cut(s)	54
BseBI	CCWGG	1 cut(s)	34
BseDI	CCNNGG	3 cut(s)	32, 33, 520
BseGI	GGATG	1 cut(s)	43
BseMI	GCAATG	1 cut(s)	54
BseMII	CTCAG	4 cut(s)	88, 355, 462, 469
BseNI	ACTGG	2 cut(s)	214, 255
BseRI	GAGGAG	2 cut(s)	341, 657
BseSI	GKGCMC	1 cut(s)	368
BsgI	GTGCAG	1 cut(s)	273
Bsh1236I	CGCG	2 cut(s)	484, 500
BshFI	GGCC	3 cut(s)	30, 512, 525
BsiHKAI	GWGCWC	1 cut(s)	441
BslFI	GGGAC	1 cut(s)	39
BsmFI	GGGAC	1 cut(s)	39
BsnI	GGCC	3 cut(s)	30, 512, 525
Bsp119I	TTCGAA	1 cut(s)	336
Bsp1286I	GDGCHC	2 cut(s)	368, 441
Bsp143I	GATC	3 cut(s)	210, 594, 634
Bsp68I	TCGCGA	2 cut(s)	484, 500
BspACI	CCGC	3 cut(s)	513, 548, 648
BspANI	GGCC	3 cut(s)	30, 512, 525
BspCNI	CTCAG	4 cut(s)	87, 354, 463, 468
BspFNI	CGCG	2 cut(s)	484, 500
BspLI	GGNNCC	5 cut(s)	7, 31, 54, 55, 84
BspMI	ACCTGC	1 cut(s)	366
BspPI	GGATC	1 cut(s)	205
BspT104I	TTCGAA	1 cut(s)	336
BsrDI	GCAATG	1 cut(s)	54
BsrI	ACTGG	2 cut(s)	214, 255
BssECI	CCNNGG	3 cut(s)	32, 33, 520
BssMI	GATC	3 cut(s)	210, 594, 634
BssT1I	CCWWGG	1 cut(s)	520
Bst2UI	CCWGG	1 cut(s)	34
Bst6I	CTCTTC	1 cut(s)	309
BstBAI	YACGTR	2 cut(s)	418, 540
BstBI	TTCGAA	1 cut(s)	336
BstC8I	GCNNGC	1 cut(s)	242
BstDEI	CTNAG	4 cut(s)	74, 341, 455, 471
BstF5I	GGATG	1 cut(s)	43
BstFNI	CGCG	2 cut(s)	484, 500
BstH2I	RGCGCY	2 cut(s)	74, 146
BstHHI	GCGC	2 cut(s)	73, 145
BstKTI	GATC	3 cut(s)	213, 597, 637
BstMBI	GATC	3 cut(s)	210, 594, 634
BstMWI	GCNNNNNNNGC	5 cut(s)	20, 237, 445, 481, 645
BstNI	CCWGG	1 cut(s)	34
BstSCI	CCNGG	1 cut(s)	32
BstSLI	GKGCMC	1 cut(s)	368
BstUI	CGCG	2 cut(s)	484, 500
BstX2I	RGATCY	2 cut(s)	210, 594
BstYI	RGATCY	2 cut(s)	210, 594
BsuRI	GGCC	3 cut(s)	30, 512, 525
BtrI	CACGTC	1 cut(s)	67
BtsCI	GGATG	1 cut(s)	43
BtsIMutI	CAGTG	2 cut(s)	248, 468
BtuMI	TCGCGA	2 cut(s)	484, 500
BveI	ACCTGC	1 cut(s)	366
Cac8I	GCNNGC	1 cut(s)	242
CfoI	GCGC	2 cut(s)	73, 145
Cfr13I	GGNCC	4 cut(s)	6, 29, 53, 83
Csp6I	GTAC	5 cut(s)	535, 541, 577, 630, 651
CviAII	CATG	4 cut(s)	19, 89, 544, 556
CviQI	GTAC	5 cut(s)	535, 541, 577, 630, 651
DdeI	CTNAG	4 cut(s)	74, 341, 455, 471
DpnI	GATC	3 cut(s)	212, 596, 636
DpnII	GATC	3 cut(s)	210, 594, 634
EaeI	YGGCCR	1 cut(s)	523
Eam1104I	CTCTTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	309
EciI	GGCGGA	1 cut(s)	563
Ecl136II	GAGCTC	1 cut(s)	439
Eco130I	CCWWGG	1 cut(s)	520
Eco24I	GRGCYC	1 cut(s)	441
Eco47I	GGWCC	3 cut(s)	6, 53, 83
Eco47III	AGCGCT	1 cut(s)	144
Eco53kI	GAGCTC	1 cut(s)	439
Eco57I	CTGAAG	1 cut(s)	551
Eco72I	CACGTG	1 cut(s)	418
EcoICRI	GAGCTC	1 cut(s)	439
EcoO109I	RGGNCCY	2 cut(s)	29, 53
EcoRII	CCWGG	1 cut(s)	32
EcoT14I	CCWWGG	1 cut(s)	520
EcoT38I	GRGCYC	1 cut(s)	441
ErhI	CCWWGG	1 cut(s)	520
FaeI	CATG	4 cut(s)	22, 92, 547, 559
FaiI	YATR	5 cut(s)	20, 90, 162, 545, 557
FaqI	GGGAC	1 cut(s)	39
FatI	CATG	4 cut(s)	18, 88, 543, 555
Fnu4HI	GCNGC	1 cut(s)	513
FokI	GGATG	1 cut(s)	50
FriOI	GRGCYC	1 cut(s)	441
Fsp4HI	GCNGC	1 cut(s)	513
FspBI	CTAG	3 cut(s)	140, 369, 624
GlaI	GCGC	2 cut(s)	72, 144
GluI	GCNGC	1 cut(s)	513
GsuI	CTGGAG	2 cut(s)	191, 497
HaeII	RGCGCY	2 cut(s)	74, 146
HaeIII	GGCC	3 cut(s)	30, 512, 525
HhaI	GCGC	2 cut(s)	73, 145
Hin1II	CATG	4 cut(s)	22, 92, 547, 559
Hin6I	GCGC	2 cut(s)	71, 143
HinP1I	GCGC	2 cut(s)	71, 143
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HinfI	GANTC	4 cut(s)	187, 200, 409, 479
HphI	GGTGA	1 cut(s)	173
Hpy166II	GTNNAC	4 cut(s)	86, 199, 537, 585
Hpy188I	TCNGA	3 cut(s)	344, 431, 531
Hpy188III	TCNNGA	3 cut(s)	208, 483, 499
Hpy8I	GTNNAC	4 cut(s)	86, 199, 537, 585
Hpy99I	CGWCG	1 cut(s)	592
HpyAV	CCTTC	1 cut(s)	312
HpyCH4IV	ACGT	3 cut(s)	66, 417, 539
HpyCH4V	TGCA	2 cut(s)	290, 448
HpyF10VI	GCNNNNNNNGC	5 cut(s)	20, 237, 445, 481, 645
HpyF3I	CTNAG	4 cut(s)	74, 341, 455, 471
HpySE526I	ACGT	3 cut(s)	66, 417, 539
Hsp92II	CATG	4 cut(s)	22, 92, 547, 559
HspAI	GCGC	2 cut(s)	71, 143
KflI	GGGWCCC	1 cut(s)	53
Kzo9I	GATC	3 cut(s)	210, 594, 634
LmnI	GCTCC	1 cut(s)	436
MaeI	CTAG	3 cut(s)	140, 369, 624
MaeII	ACGT	3 cut(s)	66, 417, 539
MaeIII	GTNAC	1 cut(s)	466
MalI	GATC	3 cut(s)	212, 596, 636
MboI	GATC	3 cut(s)	210, 594, 634
MboII	GAAGA	2 cut(s)	326, 583
MflI	RGATCY	2 cut(s)	210, 594
MhlI	GDGCHC	2 cut(s)	368, 441
MlsI	TGGCCA	1 cut(s)	525
MluCI	AATT	2 cut(s)	100, 108
MluNI	TGGCCA	1 cut(s)	525
MlyI	GAGTC	3 cut(s)	181, 194, 488
Mox20I	TGGCCA	1 cut(s)	525
MscI	TGGCCA	1 cut(s)	525
MslI	CAYNNNNRTG	2 cut(s)	93, 542
Msp20I	TGGCCA	1 cut(s)	525
MspR9I	CCNGG	1 cut(s)	34
MvaI	CCWGG	1 cut(s)	34
MvnI	CGCG	2 cut(s)	484, 500
MwoI	GCNNNNNNNGC	5 cut(s)	20, 237, 445, 481, 645
NdeII	GATC	3 cut(s)	210, 594, 634
NlaIII	CATG	4 cut(s)	22, 92, 547, 559
NlaIV	GGNNCC	5 cut(s)	7, 31, 54, 55, 84
NmuCI	GTSAC	1 cut(s)	466
NruI	TCGCGA	2 cut(s)	484, 500
NspV	TTCGAA	1 cut(s)	336
PasI	CCCWGGG	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	409
PflFI	GACNNNGTC	1 cut(s)	464
PkrI	GCNGC	1 cut(s)	514
PleI	GAGTC	3 cut(s)	181, 194, 487
PmaCI	CACGTG	1 cut(s)	418
PmlI	CACGTG	1 cut(s)	418
PpsI	GAGTC	3 cut(s)	181, 194, 487
Ppu21I	YACGTR	2 cut(s)	418, 540
PpuMI	RGGWCCY	1 cut(s)	53
Psp124BI	GAGCTC	1 cut(s)	441
Psp5II	RGGWCCY	1 cut(s)	53
Psp6I	CCWGG	1 cut(s)	32
PspCI	CACGTG	1 cut(s)	418
PspGI	CCWGG	1 cut(s)	32
PspN4I	GGNNCC	5 cut(s)	7, 31, 54, 55, 84
PspPI	GGNCC	4 cut(s)	6, 29, 53, 83
PspPPI	RGGWCCY	1 cut(s)	53
PsuI	RGATCY	2 cut(s)	210, 594
PsyI	GACNNNGTC	1 cut(s)	464
RruI	TCGCGA	2 cut(s)	484, 500
RsaI	GTAC	5 cut(s)	536, 542, 578, 631, 652
RsaNI	GTAC	5 cut(s)	535, 541, 577, 630, 651
RseI	CAYNNNNRTG	2 cut(s)	93, 542
SacI	GAGCTC	1 cut(s)	441
SatI	GCNGC	1 cut(s)	513
Sau3AI	GATC	3 cut(s)	210, 594, 634
Sau96I	GGNCC	4 cut(s)	6, 29, 53, 83
SchI	GAGTC	3 cut(s)	181, 194, 488
ScrFI	CCNGG	1 cut(s)	34
SduI	GDGCHC	2 cut(s)	368, 441
SfuI	TTCGAA	1 cut(s)	336
SinI	GGWCC	3 cut(s)	6, 53, 83
SmiMI	CAYNNNNRTG	2 cut(s)	93, 542
Sse9I	AATT	2 cut(s)	100, 108
SsiI	CCGC	3 cut(s)	513, 548, 648
SspMI	CTAG	3 cut(s)	140, 369, 624
SstI	GAGCTC	1 cut(s)	441
StyD4I	CCNGG	1 cut(s)	32
StyI	CCWWGG	1 cut(s)	520
TaiI	ACGT	3 cut(s)	69, 420, 542
TaqI	TCGA	2 cut(s)	336, 620
TasI	AATT	2 cut(s)	100, 108
TatI	WGTACW	2 cut(s)	534, 576
TauI	GCSGC	1 cut(s)	515
TfiI	GAWTC	1 cut(s)	409
TscAI	CASTG	2 cut(s)	255, 475
TseFI	GTSAC	1 cut(s)	466
Tsp45I	GTSAC	1 cut(s)	466
TspDTI	ATGAA	3 cut(s)	105, 111, 544
TspGWI	ACGGA	1 cut(s)	605
TspRI	CASTG	2 cut(s)	255, 475
Tth111I	GACNNNGTC	1 cut(s)	464
VpaK11BI	GGWCC	3 cut(s)	6, 53, 83
XapI	RAATTY	1 cut(s)	100
XcmI	CCANNNNNNNNNTGG	3 cut(s)	16, 40, 64
XspI	CTAG	3 cut(s)	140, 369, 624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.