Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0010912

Physical Location & Seq

Genomic Coordinates Forward (+)

18051853 .. 18052263

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g19380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGAGCTGGCTCAGGAGGATCGAGCTCATCGAGCCCTACTACCGCCCGCCGCCGCCGTCGGCAGTTATTCTCCGGGAGACCTCCATTTTCGCCGCTCCCAAAACCCTGCATTGCCCTTTCCCTTCGTTTTTCGAACAGGTTGAGGAGGATTACGAGCTCGGATACGCGCTGGAGCTGTTGAGTCCGACCCCGATCAAAACGCCGTCGCTTCTTTCCTACGGGATGATTCAGCGAGTCGAGAGGCTCGGGGGTGAGCTGTTCCTGCAGAGCCTGAGCGACCGAGTCAGTGAGCTCGAGTCGCGGTTCGATCGGCTGGCGAAGGTGAAATTGGGCGGGGATCGGAAGTACACTTGGACGGCGGATCGATCAAGGGGCCGGAGAAGCACGGGCTCGAGCGGAAGTACAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005911 GO:0006457 GO:0006950 GO:0006986 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009506 GO:0009605 GO:0009607 GO:0009628 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0030054 GO:0033554 GO:0034605 GO:0034620 GO:0035966 GO:0035967 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055044 GO:0070417 GO:0070887 GO:0071310 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG

Protein Analysis

137

Amino Acids

15.49

Weight (kDa)

8.78

Isoelectric Point (pI)

70.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010912)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62390
fragaria_vesca	FvH4_7g27600 FvH4_7g27600
prunus_persica	Prupe.2G277700_v2.0.a1
pyrus_communis	pycom01g19380 pycom01g19390 pycom07g22700
rosa_chinensis	RchiOBHm_Chr1g0374461
rosa_laevigata	RLG00000026735
rosa_multiflora	Rmu_sc0011139.1_g000005 Rmu_sc0016220.1_g000001 Rmu_sc0017667.1_g000001 Rmu_ssc0000007.1_g000007
rosa_roxburghii	Rroxscaffold_4G00283460
rosa_rugosa	Rorug01G0383300
rosa_samantha	Rh1AG394200 Rh1BG358800 Rh1CG371800 Rh1DG389400
rosa_wichuraiana	Rw1G034200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	95, 396
AccII	CGCG	2 cut(s)	167, 301
AciI	CCGC	9 cut(s)	43, 47, 50, 53, 93, 301, 333, 359, 396
AclWI	GGATC	3 cut(s)	26, 345, 369
AfaI	GTAC	2 cut(s)	347, 403
AjuI	GAANNNNNNNTTGG	2 cut(s)	311, 343
AluBI	AGCT	6 cut(s)	6, 25, 157, 175, 256, 292
AluI	AGCT	6 cut(s)	6, 25, 157, 175, 256, 292
Alw21I	GWGCWC	3 cut(s)	27, 159, 294
Alw26I	GTCTC	1 cut(s)	71
AlwI	GGATC	3 cut(s)	26, 345, 369
AlwNI	CAGNNNCTG	1 cut(s)	271
Ama87I	CYCGRG	3 cut(s)	245, 293, 391
AoxI	GGCC	1 cut(s)	373
AspLEI	GCGC	1 cut(s)	169
AspS9I	GGNCC	1 cut(s)	373
AsuC2I	CCSGG	1 cut(s)	74
AsuHPI	GGTGA	2 cut(s)	263, 334
AsuII	TTCGAA	1 cut(s)	132
AvaI	CYCGRG	3 cut(s)	245, 293, 391
BanII	GRGCYC	5 cut(s)	27, 36, 159, 294, 392
Bbv12I	GWGCWC	3 cut(s)	27, 159, 294
BceAI	ACGGC	3 cut(s)	40, 187, 372
BciVI	GTATCC	1 cut(s)	155
BcnI	CCSGG	1 cut(s)	74
BcoDI	GTCTC	1 cut(s)	71
BfmI	CTRYAG	1 cut(s)	263
BfuI	GTATCC	1 cut(s)	155
BisI	GCNGC	3 cut(s)	50, 53, 93
BlsI	GCNGC	3 cut(s)	51, 54, 94
Bme1390I	CCNGG	1 cut(s)	74
BmeT110I	CYCGRG	3 cut(s)	245, 293, 391
BmgT120I	GGNCC	1 cut(s)	373
BmiI	GGNNCC	1 cut(s)	374
BmrFI	CCNGG	1 cut(s)	74
BpmI	CTGGAG	1 cut(s)	191
Bpu10I	CCTNAGC	2 cut(s)	11, 272
Bpu14I	TTCGAA	1 cut(s)	132
BpuMI	CCSGG	1 cut(s)	74
Bsa29I	ATCGAT	1 cut(s)	364
BsaI	GGTCTC	1 cut(s)	71
Bse3DI	GCAATG	1 cut(s)	109
BseCI	ATCGAT	1 cut(s)	364
BseGI	GGATG	1 cut(s)	228
BseMI	GCAATG	1 cut(s)	109
BseMII	CTCAG	2 cut(s)	25, 263
BseRI	GAGGAG	1 cut(s)	158
Bsh1236I	CGCG	2 cut(s)	167, 301
Bsh1285I	CGRYCG	2 cut(s)	280, 310
BshFI	GGCC	1 cut(s)	375
BshVI	ATCGAT	1 cut(s)	364
BsiEI	CGRYCG	2 cut(s)	280, 310
BsiHKAI	GWGCWC	3 cut(s)	27, 159, 294
BsiHKCI	CYCGRG	3 cut(s)	245, 293, 391
BsiSI	CCGG	2 cut(s)	73, 376
BsmAI	GTCTC	1 cut(s)	71
BsnI	GGCC	1 cut(s)	375
Bso31I	GGTCTC	1 cut(s)	71
BsoBI	CYCGRG	3 cut(s)	245, 293, 391
Bsp119I	TTCGAA	1 cut(s)	132
Bsp1286I	GDGCHC	5 cut(s)	27, 36, 159, 294, 392
Bsp143I	GATC	6 cut(s)	18, 192, 307, 337, 361, 365
BspACI	CCGC	9 cut(s)	43, 47, 50, 53, 93, 301, 333, 359, 396
BspANI	GGCC	1 cut(s)	375
BspCNI	CTCAG	2 cut(s)	24, 264
BspDI	ATCGAT	1 cut(s)	364
BspFNI	CGCG	2 cut(s)	167, 301
BspLI	GGNNCC	1 cut(s)	374
BspMAI	CTGCAG	1 cut(s)	267
BspPI	GGATC	3 cut(s)	26, 345, 369
BspT104I	TTCGAA	1 cut(s)	132
BspTNI	GGTCTC	1 cut(s)	71
BsrBI	CCGCTC	2 cut(s)	95, 396
BsrDI	GCAATG	1 cut(s)	109
BssMI	GATC	6 cut(s)	18, 192, 307, 337, 361, 365
BstBI	TTCGAA	1 cut(s)	132
BstC8I	GCNNGC	3 cut(s)	8, 47, 315
BstDEI	CTNAG	2 cut(s)	11, 272
BstF5I	GGATG	1 cut(s)	228
BstFNI	CGCG	2 cut(s)	167, 301
BstHHI	GCGC	1 cut(s)	169
BstKTI	GATC	6 cut(s)	21, 195, 310, 340, 364, 368
BstMAI	GTCTC	1 cut(s)	71
BstMBI	GATC	6 cut(s)	18, 192, 307, 337, 361, 365
BstMCI	CGRYCG	2 cut(s)	280, 310
BstMWI	GCNNNNNNNGC	4 cut(s)	31, 262, 298, 381
BstSCI	CCNGG	1 cut(s)	72
BstSFI	CTRYAG	1 cut(s)	263
BstUI	CGCG	2 cut(s)	167, 301
Bsu15I	ATCGAT	1 cut(s)	364
BsuI	GTATCC	1 cut(s)	155
BsuRI	GGCC	1 cut(s)	375
BsuTUI	ATCGAT	1 cut(s)	364
BtsCI	GGATG	1 cut(s)	228
BtsIMutI	CAGTG	1 cut(s)	292
Cac8I	GCNNGC	3 cut(s)	8, 47, 315
CaiI	CAGNNNCTG	1 cut(s)	271
CfoI	GCGC	1 cut(s)	169
Cfr13I	GGNCC	1 cut(s)	373
ClaI	ATCGAT	1 cut(s)	364
Csp6I	GTAC	2 cut(s)	346, 402
CviQI	GTAC	2 cut(s)	346, 402
DdeI	CTNAG	2 cut(s)	11, 272
DpnI	GATC	6 cut(s)	20, 194, 309, 339, 363, 367
DpnII	GATC	6 cut(s)	18, 192, 307, 337, 361, 365
EciI	GGCGGA	1 cut(s)	374
Ecl136II	GAGCTC	3 cut(s)	25, 157, 292
Eco24I	GRGCYC	5 cut(s)	27, 36, 159, 294, 392
Eco31I	GGTCTC	1 cut(s)	71
Eco53kI	GAGCTC	3 cut(s)	25, 157, 292
Eco88I	CYCGRG	3 cut(s)	245, 293, 391
EcoICRI	GAGCTC	3 cut(s)	25, 157, 292
EcoT38I	GRGCYC	5 cut(s)	27, 36, 159, 294, 392
FauI	CCCGC	2 cut(s)	54, 326
Fnu4HI	GCNGC	3 cut(s)	50, 53, 93
FokI	GGATG	1 cut(s)	235
FriOI	GRGCYC	5 cut(s)	27, 36, 159, 294, 392
Fsp4HI	GCNGC	3 cut(s)	50, 53, 93
GlaI	GCGC	1 cut(s)	168
GluI	GCNGC	3 cut(s)	50, 53, 93
GsuI	CTGGAG	1 cut(s)	191
HaeIII	GGCC	1 cut(s)	375
HapII	CCGG	2 cut(s)	73, 376
HhaI	GCGC	1 cut(s)	169
Hin6I	GCGC	1 cut(s)	167
HinP1I	GCGC	1 cut(s)	167
HinfI	GANTC	5 cut(s)	181, 226, 234, 282, 296
HpaII	CCGG	2 cut(s)	73, 376
HphI	GGTGA	2 cut(s)	263, 334
Hpy166II	GTNNAC	1 cut(s)	348
Hpy188I	TCNGA	3 cut(s)	161, 186, 342
Hpy188III	TCNNGA	2 cut(s)	13, 238
Hpy8I	GTNNAC	1 cut(s)	348
Hpy99I	CGWCG	2 cut(s)	61, 208
HpyAV	CCTTC	2 cut(s)	132, 313
HpyCH4V	TGCA	2 cut(s)	109, 265
HpyF10VI	GCNNNNNNNGC	4 cut(s)	31, 262, 298, 381
HpyF3I	CTNAG	2 cut(s)	11, 272
HspAI	GCGC	1 cut(s)	167
Kzo9I	GATC	6 cut(s)	18, 192, 307, 337, 361, 365
LmnI	GCTCC	2 cut(s)	100, 172
LpnPI	CCDG	8 cut(s)	86, 119, 122, 155, 275, 284, 299, 389
MalI	GATC	6 cut(s)	20, 194, 309, 339, 363, 367
MbiI	CCGCTC	2 cut(s)	95, 396
MboI	GATC	6 cut(s)	18, 192, 307, 337, 361, 365
MhlI	GDGCHC	5 cut(s)	27, 36, 159, 294, 392
MluCI	AATT	1 cut(s)	326
MlyI	GAGTC	4 cut(s)	190, 243, 291, 305
MmeI	TCCRAC	1 cut(s)	209
MnlI	CCTC	5 cut(s)	9, 91, 136, 139, 234
MspI	CCGG	2 cut(s)	73, 376
MspR9I	CCNGG	1 cut(s)	74
MvnI	CGCG	2 cut(s)	167, 301
MwoI	GCNNNNNNNGC	4 cut(s)	31, 262, 298, 381
NciI	CCSGG	1 cut(s)	74
NdeII	GATC	6 cut(s)	18, 192, 307, 337, 361, 365
NlaIV	GGNNCC	1 cut(s)	374
NspV	TTCGAA	1 cut(s)	132
PaeR7I	CTCGAG	2 cut(s)	293, 391
PcsI	WCGNNNNNNNCGW	1 cut(s)	27
PfeI	GAWTC	1 cut(s)	226
PflFI	GACNNNGTC	1 cut(s)	281
PfoI	TCCNGGA	1 cut(s)	72
PkrI	GCNGC	3 cut(s)	51, 54, 94
Ple19I	CGATCG	1 cut(s)	310
PleI	GAGTC	4 cut(s)	189, 242, 290, 304
PpsI	GAGTC	4 cut(s)	189, 242, 290, 304
Psp124BI	GAGCTC	3 cut(s)	27, 159, 294
PspN4I	GGNNCC	1 cut(s)	374
PspPI	GGNCC	1 cut(s)	373
PspXI	VCTCGAGB	2 cut(s)	293, 391
PstI	CTGCAG	1 cut(s)	267
PstNI	CAGNNNCTG	1 cut(s)	271
PsyI	GACNNNGTC	1 cut(s)	281
PvuI	CGATCG	1 cut(s)	310
RsaI	GTAC	2 cut(s)	347, 403
RsaNI	GTAC	2 cut(s)	346, 402
SacI	GAGCTC	3 cut(s)	27, 159, 294
SatI	GCNGC	3 cut(s)	50, 53, 93
Sau3AI	GATC	6 cut(s)	18, 192, 307, 337, 361, 365
Sau96I	GGNCC	1 cut(s)	373
SchI	GAGTC	4 cut(s)	190, 243, 291, 305
ScrFI	CCNGG	1 cut(s)	74
SduI	GDGCHC	5 cut(s)	27, 36, 159, 294, 392
SetI	ASST	9 cut(s)	8, 27, 83, 141, 159, 177, 258, 294, 324
SfcI	CTRYAG	1 cut(s)	263
Sfr274I	CTCGAG	2 cut(s)	293, 391
SfuI	TTCGAA	1 cut(s)	132
SlaI	CTCGAG	2 cut(s)	293, 391
SmlI	CTYRAG	2 cut(s)	293, 391
SmoI	CTYRAG	2 cut(s)	293, 391
Sse9I	AATT	1 cut(s)	326
SsiI	CCGC	9 cut(s)	43, 47, 50, 53, 93, 301, 333, 359, 396
SstI	GAGCTC	3 cut(s)	27, 159, 294
StyD4I	CCNGG	1 cut(s)	72
TaqI	TCGA	8 cut(s)	21, 30, 132, 237, 294, 306, 364, 392
TaqII	GACCGA	1 cut(s)	294
TasI	AATT	1 cut(s)	326
TatI	WGTACW	2 cut(s)	345, 401
TauI	GCSGC	3 cut(s)	52, 55, 95
TfiI	GAWTC	1 cut(s)	226
TscAI	CASTG	1 cut(s)	292
TspRI	CASTG	1 cut(s)	292
Tth111I	GACNNNGTC	1 cut(s)	281
XhoI	CTCGAG	2 cut(s)	293, 391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.