Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0010912

Physical Location & Seq

Genomic Coordinates Forward (+)

23930583 .. 23932755

Gene Structure 2173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g22700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGAGCTGGCTCAGGAGGATCGAGCTCGTCGAGCCTTACGACTGCCCCCCGCCGCCGCCGCTTCTTCTCCAAGAGACCTCCATTTTCGCCGCTCCCAAAACCCTACCTTTCCCTTTCCCTTCGTTTTTCGAAGATGTTGAGGAGGATTGCGAGCTCGGTTACGCGCTGGAGCTGTTGAGTCCGACACCAATCAAAATGCCGTCGCTTCTTTCGTACCGGATGATTCAGCGAGTCGAGAGGCTCGGGGGTGAGTTGTTCCTGCAGAGCCTGAGCGACCGAGTCAGTGAGCTGGAGTCGCGGTTCGATCGGCTGGCGAAGGTGAAATCGGGCGGGGATCGGAAGTACACTCTGACGGCGGAGATCAAGGGGCCGGAGAAGCACGGGCTCGAGCGGAAGTACAAGTGGACGACGGAGATCAAGGGAGGAAAGCTTAAGAAGAAGGAGACCGAGGAGAAAACCGAGAAGAAGTACAGATGGACGGCTGAGATTGAGGGGAAGGGAGAGATCTCGCGGAAGTACTCGTTCACGGCGTCGAATGGCGGTGATGGTGACAGTAGCGATGCGAAGGAGAAGAAGGAGAAGAAGAAGACGAAGGTCAAGAAGGGAAAGAAGGAAGAGAGTGACACGCGTCTGGTGGAGATTGAAGAGCTTGTTGATCATGGGGCTGTCGTTCTTAGACAGGCTTTTGCAAAGAGAGCTGGAGGCAGTGGAAATGCGAAGGGCAAGAGGAAGGAGTTGTCTCCTCAAGATGCAGCAATGATGATACAGATGACTTTCAGAGCTTATCTGATCCGCAGATCACAGGCTCTTAGGGCCCTTCGCGATCTCGCTGTTGCCAAGTCCAAGTTGAAGGAGCTCAGAGCATTGTTCAATAACTTCTCTTACCGCCGCTGTGTTGCCCATGATGCAGCAGAGCGTCAGAGGTTCACTGAAAGAATCATCGTCCTGCTTCTCACTGTTGATGCCATTGAGGGTGCTGATGTAATGGTGCGCTCAGCAAAGAGATCGATGGTGGATGAACTTGAAGCGATGCTTGAGGTGGTTGACCCCCAGCCTGCTGGTGCTGGAAAATCACCTTCCATGAGGCGGAGGACCTTTGATATGCCGGATGGTGTCATTCAGAGGGAAATCGCTGAAGGTGTGGCACAAGTTGTCCAAATGCTTGAACGTGAAGAGAGCAGTTCTAATAAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005911 GO:0006457 GO:0006950 GO:0006986 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009506 GO:0009605 GO:0009607 GO:0009628 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0030054 GO:0033554 GO:0034605 GO:0034620 GO:0035966 GO:0035967 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055044 GO:0070417 GO:0070887 GO:0071310 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BAG

Protein Analysis

399

Amino Acids

45.09

Weight (kDa)

9.29

Isoelectric Point (pI)

59.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010912)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62390
fragaria_vesca	FvH4_7g27600 FvH4_7g27600
prunus_persica	Prupe.2G277700_v2.0.a1
pyrus_communis	pycom01g19380 pycom01g19390 pycom07g22700
rosa_chinensis	RchiOBHm_Chr1g0374461
rosa_laevigata	RLG00000026735
rosa_multiflora	Rmu_sc0011139.1_g000005 Rmu_sc0016220.1_g000001 Rmu_sc0017667.1_g000001 Rmu_ssc0000007.1_g000007
rosa_roxburghii	Rroxscaffold_4G00283460
rosa_rugosa	Rorug01G0383300
rosa_samantha	Rh1AG394200 Rh1BG358800 Rh1CG371800 Rh1DG389400
rosa_wichuraiana	Rw1G034200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	92, 391
AccII	CGCG	5 cut(s)	164, 298, 511, 628, 822
AclWI	GGATC	3 cut(s)	26, 342, 784
AcuI	CTGAAG	1 cut(s)	1155
AcyI	GRCGYC	1 cut(s)	530
AfaI	GTAC	5 cut(s)	215, 344, 398, 470, 518
AfiI	CCNNNNNNNGG	1 cut(s)	1086
AflII	CTTAAG	1 cut(s)	431
AflIII	ACRYGT	1 cut(s)	626
AgsI	TTSAA	5 cut(s)	644, 850, 871, 1025, 1166
AloI	GAACNNNNNNTCC	2 cut(s)	284, 316
Alw21I	GWGCWC	3 cut(s)	27, 156, 858
Alw26I	GTCTC	3 cut(s)	68, 437, 744
AlwI	GGATC	3 cut(s)	26, 342, 784
AlwNI	CAGNNNCTG	1 cut(s)	268
Ama87I	CYCGRG	2 cut(s)	242, 386
AoxI	GGCC	2 cut(s)	368, 813
ApaI	GGGCCC	1 cut(s)	817
ApeKI	GCWGC	2 cut(s)	752, 908
AspLEI	GCGC	2 cut(s)	166, 993
AspS9I	GGNCC	4 cut(s)	368, 813, 814, 1092
AsuHPI	GGTGA	5 cut(s)	260, 331, 554, 560, 1065
AsuII	TTCGAA	1 cut(s)	129
AvaI	CYCGRG	2 cut(s)	242, 386
AvaII	GGWCC	1 cut(s)	1092
BaeGI	GKGCMC	1 cut(s)	817
BanII	GRGCYC	5 cut(s)	27, 156, 387, 817, 858
BbsI	GAAGAC	1 cut(s)	593
Bbv12I	GWGCWC	3 cut(s)	27, 156, 858
BbvI	GCAGC	2 cut(s)	764, 920
BccI	CCATC	4 cut(s)	468, 539, 1003, 1103
BceAI	ACGGC	4 cut(s)	184, 369, 495, 543
BcgI	CGANNNNNNTGC	2 cut(s)	987, 1021
BclI	TGATCA	1 cut(s)	655
BcoDI	GTCTC	3 cut(s)	68, 437, 744
BfmI	CTRYAG	1 cut(s)	260
BfrI	CTTAAG	1 cut(s)	431
BglII	AGATCT	1 cut(s)	504
BisI	GCNGC	7 cut(s)	53, 56, 59, 90, 753, 889, 909
BlpI	GCTNAGC	1 cut(s)	994
BlsI	GCNGC	7 cut(s)	54, 57, 60, 91, 754, 890, 910
BmcAI	AGTACT	1 cut(s)	518
Bme18I	GGWCC	1 cut(s)	1092
BmeT110I	CYCGRG	2 cut(s)	242, 386
BmgT120I	GGNCC	4 cut(s)	368, 813, 814, 1092
BmiI	GGNNCC	2 cut(s)	369, 815
BmsI	GCATC	5 cut(s)	550, 739, 895, 952, 1020
BoxI	GACNNNNGTC	2 cut(s)	593, 627
BpiI	GAAGAC	1 cut(s)	593
BpmI	CTGGAG	3 cut(s)	188, 311, 720
Bpu10I	CCTNAGC	2 cut(s)	11, 269
Bpu1102I	GCTNAGC	1 cut(s)	994
Bpu14I	TTCGAA	1 cut(s)	129
BpuEI	CTTGAG	2 cut(s)	729, 1055
Bsa29I	ATCGAT	1 cut(s)	1007
BsaHI	GRCGYC	1 cut(s)	530
BsaI	GGTCTC	2 cut(s)	68, 437
BsaJI	CCNNGG	1 cut(s)	447
BsaWI	WCCGGW	1 cut(s)	216
BsaXI	ACNNNNNCTCC	2 cut(s)	284, 314
Bsc4I	CCNNNNNNNGG	1 cut(s)	1086
Bse3DI	GCAATG	1 cut(s)	762
BseCI	ATCGAT	1 cut(s)	1007
BseDI	CCNNGG	1 cut(s)	447
BseGI	GGATG	3 cut(s)	225, 1021, 1114
BseLI	CCNNNNNNNGG	1 cut(s)	1086
BseMI	GCAATG	1 cut(s)	762
BseMII	CTCAG	5 cut(s)	25, 260, 474, 871, 1008
BseRI	GAGGAG	3 cut(s)	155, 464, 732
BseSI	GKGCMC	1 cut(s)	817
BseXI	GCAGC	2 cut(s)	764, 920
BseYI	CCCAGC	1 cut(s)	1050
Bsh1236I	CGCG	5 cut(s)	164, 298, 511, 628, 822
Bsh1285I	CGRYCG	2 cut(s)	277, 307
BshFI	GGCC	2 cut(s)	370, 815
BshVI	ATCGAT	1 cut(s)	1007
BsiEI	CGRYCG	2 cut(s)	277, 307
BsiHKAI	GWGCWC	3 cut(s)	27, 156, 858
BsiHKCI	CYCGRG	2 cut(s)	242, 386
BsiSI	CCGG	3 cut(s)	217, 371, 1106
BslI	CCNNNNNNNGG	1 cut(s)	1086
BsmAI	GTCTC	3 cut(s)	68, 437, 744
BsnI	GGCC	2 cut(s)	370, 815
Bso31I	GGTCTC	2 cut(s)	68, 437
BsoBI	CYCGRG	2 cut(s)	242, 386
Bsp119I	TTCGAA	1 cut(s)	129
Bsp120I	GGGCCC	1 cut(s)	813
Bsp1286I	GDGCHC	5 cut(s)	27, 156, 387, 817, 858
Bsp1720I	GCTNAGC	1 cut(s)	994
Bsp68I	TCGCGA	1 cut(s)	822
BspANI	GGCC	2 cut(s)	370, 815
BspCNI	CTCAG	5 cut(s)	24, 261, 475, 870, 1007
BspDI	ATCGAT	1 cut(s)	1007
BspFNI	CGCG	5 cut(s)	164, 298, 511, 628, 822
BspLI	GGNNCC	2 cut(s)	369, 815
BspMAI	CTGCAG	1 cut(s)	264
BspPI	GGATC	3 cut(s)	26, 342, 784
BspQI	GCTCTTC	1 cut(s)	639
BspT104I	TTCGAA	1 cut(s)	129
BspTI	CTTAAG	1 cut(s)	431
BspTNI	GGTCTC	2 cut(s)	68, 437
BsrBI	CCGCTC	2 cut(s)	92, 391
BsrDI	GCAATG	1 cut(s)	762
BssECI	CCNNGG	1 cut(s)	447
BssNI	GRCGYC	1 cut(s)	530
Bst4CI	ACNGT	2 cut(s)	554, 958
Bst6I	CTCTTC	3 cut(s)	609, 639, 1167
BstACI	GRCGYC	1 cut(s)	530
BstAFI	CTTAAG	1 cut(s)	431
BstBI	TTCGAA	1 cut(s)	129
BstC8I	GCNNGC	4 cut(s)	8, 152, 312, 1056
BstDEI	CTNAG	7 cut(s)	11, 269, 483, 674, 809, 857, 994
BstF5I	GGATG	3 cut(s)	225, 1021, 1114
BstFNI	CGCG	5 cut(s)	164, 298, 511, 628, 822
BstHHI	GCGC	2 cut(s)	166, 993
BstMAI	GTCTC	3 cut(s)	68, 437, 744
BstMCI	CGRYCG	2 cut(s)	277, 307
BstMWI	GCNNNNNNNGC	7 cut(s)	31, 58, 295, 376, 695, 812, 905
BstPAI	GACNNNNGTC	2 cut(s)	593, 627
BstSFI	CTRYAG	1 cut(s)	260
BstSLI	GKGCMC	1 cut(s)	817
BstUI	CGCG	5 cut(s)	164, 298, 511, 628, 822
BstV1I	GCAGC	2 cut(s)	764, 920
BstV2I	GAAGAC	1 cut(s)	593
BstX2I	RGATCY	1 cut(s)	504
BstXI	CCANNNNNNTGG	1 cut(s)	1058
BstYI	RGATCY	1 cut(s)	504
Bsu15I	ATCGAT	1 cut(s)	1007
BsuRI	GGCC	2 cut(s)	370, 815
BsuTUI	ATCGAT	1 cut(s)	1007
BtgZI	GCGATG	2 cut(s)	573, 1043
BtsCI	GGATG	3 cut(s)	225, 1021, 1114
BtsI	GCAGTG	1 cut(s)	712
BtsIMutI	CAGTG	4 cut(s)	289, 712, 927, 954
BtuMI	TCGCGA	1 cut(s)	822
Cac8I	GCNNGC	4 cut(s)	8, 152, 312, 1056
CaiI	CAGNNNCTG	1 cut(s)	268
CfoI	GCGC	2 cut(s)	166, 993
Cfr13I	GGNCC	4 cut(s)	368, 813, 814, 1092
ClaI	ATCGAT	1 cut(s)	1007
CseI	GACGC	3 cut(s)	519, 617, 905
Csp6I	GTAC	5 cut(s)	214, 343, 397, 469, 517
CviAII	CATG	3 cut(s)	659, 902, 1081
CviQI	GTAC	5 cut(s)	214, 343, 397, 469, 517
DdeI	CTNAG	7 cut(s)	11, 269, 483, 674, 809, 857, 994
Eam1104I	CTCTTC	3 cut(s)	609, 639, 1167
EarI	CTCTTC	3 cut(s)	609, 639, 1167
EciI	GGCGGA	2 cut(s)	371, 1102
Ecl136II	GAGCTC	3 cut(s)	25, 154, 856
Eco24I	GRGCYC	5 cut(s)	27, 156, 387, 817, 858
Eco31I	GGTCTC	2 cut(s)	68, 437
Eco47I	GGWCC	1 cut(s)	1092
Eco53kI	GAGCTC	3 cut(s)	25, 154, 856
Eco57I	CTGAAG	1 cut(s)	1155
Eco88I	CYCGRG	2 cut(s)	242, 386
EcoICRI	GAGCTC	3 cut(s)	25, 154, 856
EcoO109I	RGGNCCY	3 cut(s)	813, 814, 1092
EcoT38I	GRGCYC	5 cut(s)	27, 156, 387, 817, 858
FaeI	CATG	3 cut(s)	662, 905, 1084
FaiI	YATR	4 cut(s)	660, 903, 1082, 1103
FalI	AAGNNNNNCTT	2 cut(s)	1017, 1049
FatI	CATG	3 cut(s)	658, 901, 1080
FauI	CCCGC	2 cut(s)	57, 323
FbaI	TGATCA	1 cut(s)	655
Fnu4HI	GCNGC	7 cut(s)	53, 56, 59, 90, 753, 889, 909
FokI	GGATG	3 cut(s)	232, 1028, 1121
FriOI	GRGCYC	5 cut(s)	27, 156, 387, 817, 858
Fsp4HI	GCNGC	7 cut(s)	53, 56, 59, 90, 753, 889, 909
GlaI	GCGC	2 cut(s)	165, 992
GluI	GCNGC	7 cut(s)	53, 56, 59, 90, 753, 889, 909
GsaI	CCCAGC	1 cut(s)	1054
GsuI	CTGGAG	3 cut(s)	188, 311, 720
HaeIII	GGCC	2 cut(s)	370, 815
HapII	CCGG	3 cut(s)	217, 371, 1106
HgaI	GACGC	3 cut(s)	519, 617, 905
HhaI	GCGC	2 cut(s)	166, 993
Hin1I	GRCGYC	1 cut(s)	530
Hin1II	CATG	3 cut(s)	662, 905, 1084
Hin6I	GCGC	2 cut(s)	164, 991
HinP1I	GCGC	2 cut(s)	164, 991
HincII	GTYRAC	1 cut(s)	1045
HindII	GTYRAC	1 cut(s)	1045
HindIII	AAGCTT	1 cut(s)	428
HinfI	GANTC	6 cut(s)	178, 223, 231, 279, 293, 936
HpaII	CCGG	3 cut(s)	217, 371, 1106
HphI	GGTGA	5 cut(s)	260, 331, 554, 560, 1065
Hpy166II	GTNNAC	5 cut(s)	345, 405, 525, 927, 1045
Hpy188I	TCNGA	8 cut(s)	183, 339, 351, 779, 789, 860, 921, 1122
Hpy188III	TCNNGA	5 cut(s)	13, 235, 598, 746, 821
Hpy8I	GTNNAC	5 cut(s)	345, 405, 525, 927, 1045
Hpy99I	CGWCG	4 cut(s)	32, 205, 412, 535
HpyCH4III	ACNGT	2 cut(s)	554, 958
HpyCH4IV	ACGT	1 cut(s)	1168
HpyCH4V	TGCA	4 cut(s)	262, 689, 752, 908
HpyF10VI	GCNNNNNNNGC	7 cut(s)	31, 58, 295, 376, 695, 812, 905
HpyF3I	CTNAG	7 cut(s)	11, 269, 483, 674, 809, 857, 994
HpySE526I	ACGT	1 cut(s)	1168
Hsp92I	GRCGYC	1 cut(s)	530
Hsp92II	CATG	3 cut(s)	662, 905, 1084
HspAI	GCGC	2 cut(s)	164, 991
Ksp22I	TGATCA	1 cut(s)	655
LguI	GCTCTTC	1 cut(s)	639
LmnI	GCTCC	3 cut(s)	97, 169, 853
Lsp1109I	GCAGC	2 cut(s)	764, 920
LweI	GCATC	5 cut(s)	550, 739, 895, 952, 1020
MaeII	ACGT	1 cut(s)	1168
MaeIII	GTNAC	3 cut(s)	158, 548, 620
MbiI	CCGCTC	2 cut(s)	92, 391
MflI	RGATCY	1 cut(s)	504
MhlI	GDGCHC	5 cut(s)	27, 156, 387, 817, 858
MluI	ACGCGT	1 cut(s)	626
MlyI	GAGTC	4 cut(s)	187, 240, 288, 302
MmeI	TCCRAC	1 cut(s)	206
MseI	TTAA	1 cut(s)	432
MspA1I	CMGCKG	1 cut(s)	891
MspCI	CTTAAG	1 cut(s)	431
MspI	CCGG	3 cut(s)	217, 371, 1106
MvnI	CGCG	5 cut(s)	164, 298, 511, 628, 822
MwoI	GCNNNNNNNGC	7 cut(s)	31, 58, 295, 376, 695, 812, 905
NlaIII	CATG	3 cut(s)	662, 905, 1084
NlaIV	GGNNCC	2 cut(s)	369, 815
NmuCI	GTSAC	2 cut(s)	548, 620
NruI	TCGCGA	1 cut(s)	822
NspV	TTCGAA	1 cut(s)	129
PaeR7I	CTCGAG	1 cut(s)	386
PciSI	GCTCTTC	1 cut(s)	639
PcsI	WCGNNNNNNNCGW	4 cut(s)	27, 36, 209, 527
PfeI	GAWTC	2 cut(s)	223, 936
PflFI	GACNNNGTC	1 cut(s)	278
PkrI	GCNGC	7 cut(s)	54, 57, 60, 91, 754, 890, 910
Ple19I	CGATCG	1 cut(s)	307
PleI	GAGTC	4 cut(s)	186, 239, 287, 301
PpsI	GAGTC	4 cut(s)	186, 239, 287, 301
PpuMI	RGGWCCY	1 cut(s)	1092
PshAI	GACNNNNGTC	2 cut(s)	593, 627
Psp124BI	GAGCTC	3 cut(s)	27, 156, 858
Psp5II	RGGWCCY	1 cut(s)	1092
PspFI	CCCAGC	1 cut(s)	1050
PspN4I	GGNNCC	2 cut(s)	369, 815
PspOMI	GGGCCC	1 cut(s)	813
PspPI	GGNCC	4 cut(s)	368, 813, 814, 1092
PspPPI	RGGWCCY	1 cut(s)	1092
PspXI	VCTCGAGB	1 cut(s)	386
PstI	CTGCAG	1 cut(s)	264
PstNI	CAGNNNCTG	1 cut(s)	268
PsuI	RGATCY	1 cut(s)	504
PsyI	GACNNNGTC	1 cut(s)	278
PvuI	CGATCG	1 cut(s)	307
RruI	TCGCGA	1 cut(s)	822
RsaI	GTAC	5 cut(s)	215, 344, 398, 470, 518
RsaNI	GTAC	5 cut(s)	214, 343, 397, 469, 517
SacI	GAGCTC	3 cut(s)	27, 156, 858
SapI	GCTCTTC	1 cut(s)	639
SaqAI	TTAA	1 cut(s)	432
SatI	GCNGC	7 cut(s)	53, 56, 59, 90, 753, 889, 909
Sau96I	GGNCC	4 cut(s)	368, 813, 814, 1092
ScaI	AGTACT	1 cut(s)	518
SchI	GAGTC	4 cut(s)	187, 240, 288, 302
SduI	GDGCHC	5 cut(s)	27, 156, 387, 817, 858
SfaNI	GCATC	5 cut(s)	550, 739, 895, 952, 1020
SfcI	CTRYAG	1 cut(s)	260
Sfr274I	CTCGAG	1 cut(s)	386
SfuI	TTCGAA	1 cut(s)	129
SinI	GGWCC	1 cut(s)	1092
SlaI	CTCGAG	1 cut(s)	386
SmlI	CTYRAG	4 cut(s)	386, 431, 744, 1034
SmoI	CTYRAG	4 cut(s)	386, 431, 744, 1034
SstI	GAGCTC	3 cut(s)	27, 156, 858
TaaI	ACNGT	2 cut(s)	554, 958
TaiI	ACGT	1 cut(s)	1171
TaqI	TCGA	8 cut(s)	21, 30, 129, 234, 303, 387, 533, 1007
TaqII	GACCGA	2 cut(s)	291, 461
TatI	WGTACW	4 cut(s)	342, 396, 468, 516
TauI	GCSGC	5 cut(s)	55, 58, 61, 92, 891
TfiI	GAWTC	2 cut(s)	223, 936
Tru1I	TTAA	1 cut(s)	432
Tru9I	TTAA	1 cut(s)	432
TscAI	CASTG	4 cut(s)	289, 712, 934, 961
TseFI	GTSAC	2 cut(s)	548, 620
TseI	GCWGC	2 cut(s)	752, 908
Tsp45I	GTSAC	2 cut(s)	548, 620
TspDTI	ATGAA	1 cut(s)	1032
TspGWI	ACGGA	1 cut(s)	425
TspRI	CASTG	4 cut(s)	289, 712, 934, 961
Tth111I	GACNNNGTC	1 cut(s)	278
Vha464I	CTTAAG	1 cut(s)	431
VpaK11BI	GGWCC	1 cut(s)	1092
XhoI	CTCGAG	1 cut(s)	386
ZrmI	AGTACT	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.