Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012720

Physical Location & Seq

Genomic Coordinates Forward (+)

25184258 .. 25186777

Gene Structure 2520 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G62700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGCGTGAGATTCTTCACATCCAGGGTGGTCAATGCGGTAACCAGATCGGAGCCAAGTTCTGGGAAGTGGTTTGCGCCGAGCACGGCATCGATCCAACCGGAAGGTACACCGGAGACTCAGATCTGCAACTTGAGCGCATCAACGTTTACTACAATGAAGCGAGTTGCGGTAGATTCGTTCCTCGTGCAGTGCTCATGGATTTGGAGCCTGGGACTATGGATAGTCTCAGATCTGGACCGTACGGTCAGACCTTTCGACCTGATAACTTCGTCTTTGGTCAATCCGGTGCGGGTAACAACTGGGCCAAGGGACACTACACTGAAGGAGCTGAACTAATCGATTCCGTTCTCGATGTTGTTCGTAAGGAAGCTGAGAACTGTGACTGCCTCCAAGGGTTCCAGGTTTGTCACTCATTGGGAGGAGGAACTGGATCTGGTATGGGAACATTGTTGATCTCTAAGATCCGTGAAGAGTACCCAGATCGCATGATGCTTACCTTCTCGGTGTTCCCTTCACCAAAGGTTTCTGATACTGTGGTGGAGCCTTACAACGCTACTTTATCTGTTCATCAGCTTGTTGAGAATGCTGATGAGTGCATGGTTCTTGATAACGAGGCCTTGTACGATATTTGCTTCAGGACTCTCAAACTCACTACCCCCAGCTTTGGTGATTTGAACCATTTGATATCTGCCACTATGTCTGGTGTGACTTGCTGTCTGAGGTTCCCTGGTCAACTCAACTCTGACCTCCGTAAGCTTGCTGTGAATCTCATCCCATTCCCTCGTCTTCACTTCTTCATGGTTGGTTTTGCTCCTCTCACCTCAAGAGGTTCACAGCAGTACCGCTCCCTCACAGTCCCTGAGCTCACCCAGCAAATGTGGGACTCCAAGAACATGATGTGTGCTGCAGACCCAAGGCACGGACGCTACCTCACAGCCTCTGCCATGTTCCGTGGCAAGATGAGCACAAAGGAAGTTGACGAGCAGATGCTGAATGTTCAGAACAAGAACTCGTCCTACTTTGTGGAGTGGATCCCCAACAACGTGAAATCAACAGTCTGTGATATCCCACCTACTGGTCTGAAGATGGCTTCCACTTTCATTGGAAACTCAACATCGATCCAAGAGATGTTCAGGCGAGTGAGTGAGCAGTTCACAGCTATGTTCAGGAGGAAGGCTTTCTTGCATTGGTACACAGGTGAGGGAATGGACGAGATGGAGTTCACAGAAGCAGAGAGCAACATGAACGATCTTGTGTCAGAGTACCAGCAATACCAAGATGCAACGGCTGATGAAGAAGGTGACTACGAGGATGAGGAAGAAGGTGAATACCAACAGGAAGAAGAGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005829 GO:0005856 GO:0005886 GO:0005911 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009506 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010038 GO:0012505 GO:0016020 GO:0016043 GO:0030054 GO:0030312 GO:0032991 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045298 GO:0046686 GO:0050896 GO:0055044 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04145 ko04540 ko05130 map04145 map04540 map05130

Pfam Domains

Protein Families

Tubulin Tubulin_C

Protein Analysis

450

Amino Acids

50.73

Weight (kDa)

4.7

Isoelectric Point (pI)

40.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tubulin	PF00091	3 - 211	1.8e-64	Tubulin/FtsZ family, GTPase domain
Tubulin_C	PF03953	261 - 382	8.6e-41	Tubulin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012720)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62690 AT5G62700
fragaria_vesca	FvH4_6g12290
malus_domestica	MD04G1143700.v1.1 MD12G1158100.v1.1
prunus_persica	Prupe.6G268300_v2.0.a1
pyrus_communis	pycom04g13060 pycom05g25220 pycom06g07900 pycom07g24790 pycom11g07310 pycom12g15020
rosa_chinensis	RchiOBHm_Chr3g0464121
rosa_laevigata	RLG00000024721
rosa_multiflora	Rmu_sc0010401.1_g000003
rosa_roxburghii	Rroxscaffold_6G00415980
rosa_rugosa	Rorug03G0070700
rosa_wichuraiana	Rw3G010800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	243
AccB7I	CCANNNNNTGG	2 cut(s)	60, 1076
AccBSI	CCGCTC	1 cut(s)	846
AciI	CCGC	4 cut(s)	36, 168, 290, 844
AclI	AACGTT	1 cut(s)	144
AclWI	GGATC	6 cut(s)	86, 439, 457, 1027, 1040, 1114
AcuI	CTGAAG	3 cut(s)	342, 619, 1103
AfaI	GTAC	8 cut(s)	107, 242, 476, 623, 842, 1193, 1265, 1349
AfiI	CCNNNNNNNGG	4 cut(s)	60, 665, 920, 1076
AgsI	TTSAA	1 cut(s)	676
AhdI	GACNNNNNGTC	1 cut(s)	714
AjnI	CCWGG	4 cut(s)	21, 208, 399, 727
AluBI	AGCT	7 cut(s)	329, 371, 574, 663, 757, 865, 1160
AluI	AGCT	7 cut(s)	329, 371, 574, 663, 757, 865, 1160
Alw21I	GWGCWC	4 cut(s)	84, 195, 867, 968
Alw26I	GTCTC	2 cut(s)	108, 230
AlwI	GGATC	6 cut(s)	86, 439, 457, 1027, 1040, 1114
AlwNI	CAGNNNCTG	3 cut(s)	860, 941, 991
AoxI	GGCC	2 cut(s)	303, 615
ApeKI	GCWGC	1 cut(s)	905
Asp700I	GAANNNNTTC	1 cut(s)	1178
AspLEI	GCGC	2 cut(s)	77, 138
AspS9I	GGNCC	2 cut(s)	236, 303
AsuHPI	GGTGA	7 cut(s)	507, 680, 811, 859, 1211, 1313, 1337
AvaII	GGWCC	1 cut(s)	236
BaeI	ACNNNNGTAYC	6 cut(s)	522, 555, 824, 857, 1183, 1216
BamHI	GGATCC	1 cut(s)	1032
BanII	GRGCYC	1 cut(s)	867
BauI	CACGAG	1 cut(s)	183
BbsI	GAAGAC	1 cut(s)	779
Bbv12I	GWGCWC	4 cut(s)	84, 195, 867, 968
BbvI	GCAGC	1 cut(s)	892
BccI	CCATC	2 cut(s)	1081, 1210
BceAI	ACGGC	2 cut(s)	100, 1302
BciT130I	CCWGG	4 cut(s)	23, 210, 401, 729
BcoDI	GTCTC	2 cut(s)	108, 230
BfmI	CTRYAG	1 cut(s)	906
BglII	AGATCT	2 cut(s)	121, 230
BisI	GCNGC	1 cut(s)	906
BlsI	GCNGC	1 cut(s)	907
BmcAI	AGTACT	1 cut(s)	1349
Bme1390I	CCNGG	4 cut(s)	23, 210, 401, 729
Bme18I	GGWCC	1 cut(s)	236
BmeRI	GACNNNNNGTC	1 cut(s)	714
BmgT120I	GGNCC	2 cut(s)	236, 303
BmiI	GGNNCC	6 cut(s)	52, 207, 398, 543, 725, 1034
BmrFI	CCNGG	4 cut(s)	23, 210, 401, 729
BmrI	ACTGGG	1 cut(s)	310
BmsI	GCATC	5 cut(s)	96, 147, 480, 978, 1270
BmuI	ACTGGG	1 cut(s)	310
BpiI	GAAGAC	1 cut(s)	779
Bpu10I	CCTNAGC	1 cut(s)	861
BpuEI	CTTGAG	2 cut(s)	152, 808
Bsa29I	ATCGAT	3 cut(s)	90, 339, 1118
BsaJI	CCNNGG	7 cut(s)	22, 209, 306, 391, 727, 914, 952
BsaWI	WCCGGW	3 cut(s)	98, 110, 284
Bsc4I	CCNNNNNNNGG	4 cut(s)	60, 665, 920, 1076
Bse1I	ACTGG	3 cut(s)	305, 433, 1081
BseBI	CCWGG	4 cut(s)	23, 210, 401, 729
BseCI	ATCGAT	3 cut(s)	90, 339, 1118
BseDI	CCNNGG	7 cut(s)	22, 209, 306, 391, 727, 914, 952
BseGI	GGATG	3 cut(s)	18, 771, 1318
BseLI	CCNNNNNNNGG	4 cut(s)	60, 665, 920, 1076
BseMII	CTCAG	5 cut(s)	132, 241, 363, 710, 852
BseNI	ACTGG	3 cut(s)	305, 433, 1081
BseRI	GAGGAG	2 cut(s)	435, 804
BseXI	GCAGC	1 cut(s)	892
BseYI	CCCAGC	2 cut(s)	659, 870
BsgI	GTGCAG	1 cut(s)	207
BshFI	GGCC	2 cut(s)	305, 617
BshVI	ATCGAT	3 cut(s)	90, 339, 1118
BsiHKAI	GWGCWC	4 cut(s)	84, 195, 867, 968
BsiSI	CCGG	3 cut(s)	99, 111, 285
BsiWI	CGTACG	1 cut(s)	240
BslFI	GGGAC	4 cut(s)	226, 324, 842, 896
BslI	CCNNNNNNNGG	4 cut(s)	60, 665, 920, 1076
BsmAI	GTCTC	2 cut(s)	108, 230
BsmFI	GGGAC	4 cut(s)	226, 324, 842, 896
BsmI	GAATGC	1 cut(s)	589
BsnI	GGCC	2 cut(s)	305, 617
Bsp1286I	GDGCHC	4 cut(s)	84, 195, 867, 968
BspACI	CCGC	4 cut(s)	36, 168, 290, 844
BspANI	GGCC	2 cut(s)	305, 617
BspCNI	CTCAG	5 cut(s)	131, 240, 364, 711, 853
BspDI	ATCGAT	3 cut(s)	90, 339, 1118
BspLI	GGNNCC	6 cut(s)	52, 207, 398, 543, 725, 1034
BspMAI	CTGCAG	1 cut(s)	910
BspPI	GGATC	6 cut(s)	86, 439, 457, 1027, 1040, 1114
BsrBI	CCGCTC	1 cut(s)	846
BsrI	ACTGG	3 cut(s)	305, 433, 1081
BssECI	CCNNGG	7 cut(s)	22, 209, 306, 391, 727, 914, 952
BssSI	CACGAG	1 cut(s)	183
BssT1I	CCWWGG	3 cut(s)	306, 391, 914
Bst2BI	CACGAG	1 cut(s)	183
Bst2UI	CCWGG	4 cut(s)	23, 210, 401, 729
Bst4CI	ACNGT	6 cut(s)	240, 245, 380, 535, 856, 1057
Bst6I	CTCTTC	2 cut(s)	465, 1338
BstC8I	GCNNGC	1 cut(s)	759
BstDEI	CTNAG	6 cut(s)	118, 227, 372, 459, 719, 861
BstDSI	CCRYGG	1 cut(s)	952
BstEII	GGTNACC	1 cut(s)	38
BstF5I	GGATG	3 cut(s)	18, 771, 1318
BstHHI	GCGC	2 cut(s)	77, 138
BstMAI	GTCTC	2 cut(s)	108, 230
BstMWI	GCNNNNNNNGC	3 cut(s)	133, 871, 963
BstNI	CCWGG	4 cut(s)	23, 210, 401, 729
BstPI	GGTNACC	1 cut(s)	38
BstSCI	CCNGG	4 cut(s)	21, 208, 399, 727
BstSFI	CTRYAG	1 cut(s)	906
BstV1I	GCAGC	1 cut(s)	892
BstV2I	GAAGAC	1 cut(s)	779
BstX2I	RGATCY	5 cut(s)	121, 230, 431, 462, 1032
BstYI	RGATCY	5 cut(s)	121, 230, 431, 462, 1032
Bsu15I	ATCGAT	3 cut(s)	90, 339, 1118
BsuRI	GGCC	2 cut(s)	305, 617
BsuTUI	ATCGAT	3 cut(s)	90, 339, 1118
BtgI	CCRYGG	1 cut(s)	952
BtsCI	GGATG	3 cut(s)	18, 771, 1318
BtsI	GCAGTG	1 cut(s)	195
BtsIMutI	CAGTG	2 cut(s)	195, 318
Cac8I	GCNNGC	1 cut(s)	759
CaiI	CAGNNNCTG	3 cut(s)	860, 941, 991
CfoI	GCGC	2 cut(s)	77, 138
Cfr13I	GGNCC	2 cut(s)	236, 303
ClaI	ATCGAT	3 cut(s)	90, 339, 1118
CseI	GACGC	1 cut(s)	933
Csp6I	GTAC	8 cut(s)	106, 241, 475, 622, 841, 1192, 1264, 1348
CspCI	CAANNNNNGTGG	2 cut(s)	1084, 1119
CviAII	CATG	7 cut(s)	196, 487, 598, 799, 895, 946, 1243
CviQI	GTAC	8 cut(s)	106, 241, 475, 622, 841, 1192, 1264, 1348
DdeI	CTNAG	6 cut(s)	118, 227, 372, 459, 719, 861
DrdI	GACNNNNNNGTC	1 cut(s)	243
DriI	GACNNNNNGTC	1 cut(s)	714
DseDI	GACNNNNNNGTC	1 cut(s)	243
Eam1104I	CTCTTC	2 cut(s)	465, 1338
Eam1105I	GACNNNNNGTC	1 cut(s)	714
EarI	CTCTTC	2 cut(s)	465, 1338
Ecl136II	GAGCTC	1 cut(s)	865
Eco130I	CCWWGG	3 cut(s)	306, 391, 914
Eco147I	AGGCCT	1 cut(s)	617
Eco24I	GRGCYC	1 cut(s)	867
Eco32I	GATATC	2 cut(s)	687, 1066
Eco47I	GGWCC	1 cut(s)	236
Eco53kI	GAGCTC	1 cut(s)	865
Eco57I	CTGAAG	3 cut(s)	342, 619, 1103
Eco91I	GGTNACC	1 cut(s)	38
EcoICRI	GAGCTC	1 cut(s)	865
EcoO65I	GGTNACC	1 cut(s)	38
EcoRII	CCWGG	4 cut(s)	21, 208, 399, 727
EcoRV	GATATC	2 cut(s)	687, 1066
EcoT14I	CCWWGG	3 cut(s)	306, 391, 914
EcoT38I	GRGCYC	1 cut(s)	867
ErhI	CCWWGG	3 cut(s)	306, 391, 914
FaeI	CATG	7 cut(s)	199, 490, 601, 802, 898, 949, 1246
FalI	AAGNNNNNCTT	2 cut(s)	1166, 1198
FaqI	GGGAC	4 cut(s)	226, 324, 842, 896
FatI	CATG	7 cut(s)	195, 486, 597, 798, 894, 945, 1242
FauI	CCCGC	1 cut(s)	283
Fnu4HI	GCNGC	1 cut(s)	906
FokI	GGATG	3 cut(s)	5, 758, 1325
FriOI	GRGCYC	1 cut(s)	867
Fsp4HI	GCNGC	1 cut(s)	906
GlaI	GCGC	2 cut(s)	76, 137
GluI	GCNGC	1 cut(s)	906
GsaI	CCCAGC	2 cut(s)	663, 874
HaeIII	GGCC	2 cut(s)	305, 617
HapII	CCGG	3 cut(s)	99, 111, 285
HgaI	GACGC	1 cut(s)	933
HhaI	GCGC	2 cut(s)	77, 138
Hin1II	CATG	7 cut(s)	199, 490, 601, 802, 898, 949, 1246
Hin6I	GCGC	2 cut(s)	75, 136
HinP1I	GCGC	2 cut(s)	75, 136
HincII	GTYRAC	2 cut(s)	734, 979
HindII	GTYRAC	2 cut(s)	734, 979
HindIII	AAGCTT	1 cut(s)	755
HinfI	GANTC	7 cut(s)	10, 116, 174, 341, 640, 766, 884
HpaII	CCGG	3 cut(s)	99, 111, 285
HphI	GGTGA	7 cut(s)	507, 680, 811, 859, 1211, 1313, 1337
Hpy166II	GTNNAC	8 cut(s)	108, 148, 734, 833, 979, 1155, 1194, 1224
Hpy188III	TCNNGA	6 cut(s)	234, 350, 605, 637, 825, 1168
Hpy8I	GTNNAC	8 cut(s)	108, 148, 734, 833, 979, 1155, 1194, 1224
HpyAV	CCTTC	7 cut(s)	96, 317, 508, 522, 1168, 1292, 1316
HpyCH4III	ACNGT	6 cut(s)	240, 245, 380, 535, 856, 1057
HpyCH4IV	ACGT	2 cut(s)	144, 1044
HpyCH4V	TGCA	6 cut(s)	127, 188, 597, 908, 1186, 1283
HpyF10VI	GCNNNNNNNGC	3 cut(s)	133, 871, 963
HpyF3I	CTNAG	6 cut(s)	118, 227, 372, 459, 719, 861
HpySE526I	ACGT	2 cut(s)	144, 1044
Hsp92II	CATG	7 cut(s)	199, 490, 601, 802, 898, 949, 1246
HspAI	GCGC	2 cut(s)	75, 136
LmnI	GCTCC	6 cut(s)	50, 205, 326, 541, 817, 851
Lsp1109I	GCAGC	1 cut(s)	892
LweI	GCATC	5 cut(s)	96, 147, 480, 978, 1270
MaeII	ACGT	2 cut(s)	144, 1044
MaeIII	GTNAC	6 cut(s)	38, 293, 380, 407, 706, 1301
MbiI	CCGCTC	1 cut(s)	846
MboII	GAAGA	8 cut(s)	5, 482, 779, 787, 1096, 1307, 1331, 1352
MflI	RGATCY	5 cut(s)	121, 230, 431, 462, 1032
MhlI	GDGCHC	4 cut(s)	84, 195, 867, 968
MlyI	GAGTC	3 cut(s)	110, 634, 878
MmeI	TCCRAC	1 cut(s)	119
MroXI	GAANNNNTTC	1 cut(s)	1178
MslI	CAYNNNNRTG	1 cut(s)	1160
MspI	CCGG	3 cut(s)	99, 111, 285
MspR9I	CCNGG	4 cut(s)	23, 210, 401, 729
Mva1269I	GAATGC	1 cut(s)	589
MvaI	CCWGG	4 cut(s)	23, 210, 401, 729
MwoI	GCNNNNNNNGC	3 cut(s)	133, 871, 963
NlaIII	CATG	7 cut(s)	199, 490, 601, 802, 898, 949, 1246
NlaIV	GGNNCC	6 cut(s)	52, 207, 398, 543, 725, 1034
NmeAIII	GCCGAG	1 cut(s)	103
NmuCI	GTSAC	4 cut(s)	380, 407, 706, 1301
PceI	AGGCCT	1 cut(s)	617
PctI	GAATGC	1 cut(s)	589
PdmI	GAANNNNTTC	1 cut(s)	1178
PfeI	GAWTC	4 cut(s)	10, 174, 341, 766
Pfl23II	CGTACG	1 cut(s)	240
PflMI	CCANNNNNTGG	2 cut(s)	60, 1076
PkrI	GCNGC	1 cut(s)	907
PleI	GAGTC	3 cut(s)	110, 634, 878
PpsI	GAGTC	3 cut(s)	110, 634, 878
Psp124BI	GAGCTC	1 cut(s)	867
Psp1406I	AACGTT	1 cut(s)	144
Psp6I	CCWGG	4 cut(s)	21, 208, 399, 727
PspEI	GGTNACC	1 cut(s)	38
PspFI	CCCAGC	2 cut(s)	659, 870
PspGI	CCWGG	4 cut(s)	21, 208, 399, 727
PspLI	CGTACG	1 cut(s)	240
PspN4I	GGNNCC	6 cut(s)	52, 207, 398, 543, 725, 1034
PspPI	GGNCC	2 cut(s)	236, 303
PsrI	GAACNNNNNNTAC	2 cut(s)	1001, 1033
PstI	CTGCAG	1 cut(s)	910
PstNI	CAGNNNCTG	3 cut(s)	860, 941, 991
PsuI	RGATCY	5 cut(s)	121, 230, 431, 462, 1032
RsaI	GTAC	8 cut(s)	107, 242, 476, 623, 842, 1193, 1265, 1349
RsaNI	GTAC	8 cut(s)	106, 241, 475, 622, 841, 1192, 1264, 1348
RseI	CAYNNNNRTG	1 cut(s)	1160
SacI	GAGCTC	1 cut(s)	867
SatI	GCNGC	1 cut(s)	906
Sau96I	GGNCC	2 cut(s)	236, 303
ScaI	AGTACT	1 cut(s)	1349
SchI	GAGTC	3 cut(s)	110, 634, 878
ScrFI	CCNGG	4 cut(s)	23, 210, 401, 729
SduI	GDGCHC	4 cut(s)	84, 195, 867, 968
SfaNI	GCATC	5 cut(s)	96, 147, 480, 978, 1270
SfcI	CTRYAG	1 cut(s)	906
SinI	GGWCC	1 cut(s)	236
SmiMI	CAYNNNNRTG	1 cut(s)	1160
SmlI	CTYRAG	2 cut(s)	131, 823
SmoI	CTYRAG	2 cut(s)	131, 823
SseBI	AGGCCT	1 cut(s)	617
SsiI	CCGC	4 cut(s)	36, 168, 290, 844
SstI	GAGCTC	1 cut(s)	867
StuI	AGGCCT	1 cut(s)	617
StyD4I	CCNGG	4 cut(s)	21, 208, 399, 727
StyI	CCWWGG	3 cut(s)	306, 391, 914
TaaI	ACNGT	6 cut(s)	240, 245, 380, 535, 856, 1057
TaiI	ACGT	2 cut(s)	147, 1047
TaqI	TCGA	5 cut(s)	90, 256, 339, 351, 1118
TatI	WGTACW	1 cut(s)	1347
TfiI	GAWTC	4 cut(s)	10, 174, 341, 766
TscAI	CASTG	2 cut(s)	195, 325
TseFI	GTSAC	4 cut(s)	380, 407, 706, 1301
TseI	GCWGC	1 cut(s)	905
Tsp45I	GTSAC	4 cut(s)	380, 407, 706, 1301
TspDTI	ATGAA	6 cut(s)	171, 557, 787, 1090, 1259, 1308
TspGWI	ACGGA	5 cut(s)	334, 455, 740, 936, 941
TspRI	CASTG	2 cut(s)	195, 325
Van91I	CCANNNNNTGG	2 cut(s)	60, 1076
VpaK11BI	GGWCC	1 cut(s)	236
XmnI	GAANNNNTTC	1 cut(s)	1178
ZrmI	AGTACT	1 cut(s)	1349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.