Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0012720

Physical Location & Seq

Genomic Coordinates Forward (+)

26687415 .. 26688909

Gene Structure 1495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g25220.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGCCATTTTCTCCACTACCTGTTCCTCTCCATCCAATCGCGGCAAAACCAAAACCTATCACGGTAACATTTTCCCTCGCTTTCCCCTCCCATTTTCCCGGCAACCAAACAGGTCTCGAACCCCCAAGGATGAGAGAAATCCTCCACATCCAGGGAGGCCAGTGCGGCAACCAGATCGGCGCCAAGTTCTGGGAAGTGATCTGCGACGAGCACGGCATCGACGGCACCGGAAGGTACAACGGCGACTCCGAGCTCCAGCTCGAGCGAATCAATGTCTATTACAACGAGGCCACCGGCGGAAGGTACGTACCACGTGCGGTTCTTATGGATCTGGAGCCTGGGACGATGGACGCTCTCAGATCCGGCCCGTTCGGGCAGATTTTCAGACCCGATAACTTCGTGTTCGGGCAGTCTGGGGCCGGGAACAATTGGGCTAAAGGGCATTATACGGAGGGCGCCGAGCTTATCGATTCCGTGCTCGATGTGGTGCGAAAAGAGGCTGAGAATTGCGATTGCTTGCAGGGATTCCAAGTATGTCATTCTTTGGGTGGTGGCACCGGCTCTGGCATGGGAACTCTTCTTATTTCCAAGATCAGGGAGGAGTACCCGGATCGAATGATGTTGACATTTTCTGTCTTCCCATCCCCAAAGGTGTCTGACACGGTTGTGGAGCCATACAATGCCACCCTTTCCGTCCATCAGCTTGTCGAAAATGCTGATGAATGTATGGTTTTGGACAATGAGGCTCTGTATGATATCTGCTTCCGCACCCTCAAGCTATCCAACCCTACTTGTAAGTCCAAATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005198 GO:0005200 GO:0005488 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005856 GO:0005886 GO:0005911 GO:0006996 GO:0007010 GO:0008150 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0012505 GO:0016020 GO:0016043 GO:0030054 GO:0030312 GO:0031090 GO:0032991 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045298 GO:0046686 GO:0048046 GO:0050896 GO:0055044 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04145 ko04540 ko05130 map04145 map04540 map05130

Pfam Domains

Protein Families

Tubulin Tubulin_C

Protein Analysis

270

Amino Acids

29.53

Weight (kDa)

5.16

Isoelectric Point (pI)

36.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012720)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62690 AT5G62700
fragaria_vesca	FvH4_6g12290
malus_domestica	MD04G1143700.v1.1 MD12G1158100.v1.1
prunus_persica	Prupe.6G268300_v2.0.a1
pyrus_communis	pycom04g13060 pycom05g25220 pycom06g07900 pycom07g24790 pycom11g07310 pycom12g15020
rosa_chinensis	RchiOBHm_Chr3g0464121
rosa_laevigata	RLG00000024721
rosa_multiflora	Rmu_sc0010401.1_g000003
rosa_roxburghii	Rroxscaffold_6G00415980
rosa_rugosa	Rorug03G0070700
rosa_wichuraiana	Rw3G010800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	4 cut(s)	179, 224, 455, 554
AccB7I	CCANNNNNTGG	1 cut(s)	189
AccII	CGCG	1 cut(s)	41
AciI	CCGC	5 cut(s)	41, 165, 297, 317, 766
AclWI	GGATC	3 cut(s)	336, 354, 618
AcvI	CACGTG	1 cut(s)	314
AcyI	GRCGYC	2 cut(s)	180, 456
AfaI	GTAC	4 cut(s)	236, 305, 309, 605
AfiI	CCNNNNNNNGG	4 cut(s)	151, 189, 300, 594
AjnI	CCWGG	2 cut(s)	150, 337
AleI	CACNNNNGTG	1 cut(s)	665
AluBI	AGCT	5 cut(s)	253, 259, 463, 703, 778
AluI	AGCT	5 cut(s)	253, 259, 463, 703, 778
Alw21I	GWGCWC	3 cut(s)	213, 255, 480
Alw26I	GTCTC	1 cut(s)	119
AlwI	GGATC	3 cut(s)	336, 354, 618
Ama87I	CYCGRG	1 cut(s)	260
AoxI	GGCC	4 cut(s)	157, 288, 364, 417
AspLEI	GCGC	2 cut(s)	182, 458
AspS9I	GGNCC	2 cut(s)	365, 417
AsuC2I	CCSGG	3 cut(s)	99, 421, 608
AvaI	CYCGRG	1 cut(s)	260
BanI	GGYRCC	4 cut(s)	179, 224, 455, 554
BanII	GRGCYC	1 cut(s)	255
BbrPI	CACGTG	1 cut(s)	314
BbsI	GAAGAC	1 cut(s)	628
Bbv12I	GWGCWC	3 cut(s)	213, 255, 480
BccI	CCATC	4 cut(s)	39, 340, 649, 705
BceAI	ACGGC	3 cut(s)	229, 238, 256
BcgI	CGANNNNNNTGC	2 cut(s)	157, 191
BciT130I	CCWGG	2 cut(s)	152, 339
BcnI	CCSGG	3 cut(s)	99, 421, 608
BcoDI	GTCTC	1 cut(s)	119
BfoI	RGCGCY	2 cut(s)	183, 459
BglI	GCCNNNNNGGC	1 cut(s)	165
BisI	GCNGC	2 cut(s)	42, 166
BlsI	GCNGC	2 cut(s)	43, 167
Bme1390I	CCNGG	5 cut(s)	99, 152, 339, 421, 608
BmeT110I	CYCGRG	1 cut(s)	260
BmgT120I	GGNCC	2 cut(s)	365, 417
BmiI	GGNNCC	7 cut(s)	181, 226, 336, 418, 457, 556, 672
BmrFI	CCNGG	5 cut(s)	99, 152, 339, 421, 608
BmsI	GCATC	1 cut(s)	225
BpiI	GAAGAC	1 cut(s)	628
BplI	GAGNNNNNCTC	2 cut(s)	126, 158
BpmI	CTGGAG	2 cut(s)	239, 353
BpuEI	CTTGAG	1 cut(s)	758
BpuMI	CCSGG	3 cut(s)	99, 421, 608
Bsa29I	ATCGAT	1 cut(s)	468
BsaAI	YACGTR	2 cut(s)	307, 314
BsaHI	GRCGYC	2 cut(s)	180, 456
BsaI	GGTCTC	1 cut(s)	119
BsaJI	CCNNGG	3 cut(s)	125, 151, 338
BsaWI	WCCGGW	1 cut(s)	227
BsaXI	ACNNNNNCTCC	2 cut(s)	230, 260
Bsc4I	CCNNNNNNNGG	4 cut(s)	151, 189, 300, 594
Bse118I	RCCGGY	2 cut(s)	293, 557
Bse1I	ACTGG	1 cut(s)	160
BseBI	CCWGG	2 cut(s)	152, 339
BseCI	ATCGAT	1 cut(s)	468
BseDI	CCNNGG	3 cut(s)	125, 151, 338
BseGI	GGATG	4 cut(s)	31, 135, 147, 641
BseLI	CCNNNNNNNGG	4 cut(s)	151, 189, 300, 594
BseMII	CTCAG	2 cut(s)	370, 492
BseNI	ACTGG	1 cut(s)	160
BseRI	GAGGAG	1 cut(s)	614
Bsh1236I	CGCG	1 cut(s)	41
BshFI	GGCC	4 cut(s)	159, 290, 366, 419
BshNI	GGYRCC	4 cut(s)	179, 224, 455, 554
BshVI	ATCGAT	1 cut(s)	468
BsiHKAI	GWGCWC	3 cut(s)	213, 255, 480
BsiHKCI	CYCGRG	1 cut(s)	260
BsiSI	CCGG	7 cut(s)	99, 228, 294, 363, 420, 558, 608
BslFI	GGGAC	1 cut(s)	355
BslI	CCNNNNNNNGG	4 cut(s)	151, 189, 300, 594
BsmAI	GTCTC	1 cut(s)	119
BsmFI	GGGAC	1 cut(s)	355
BsnI	GGCC	4 cut(s)	159, 290, 366, 419
Bso31I	GGTCTC	1 cut(s)	119
BsoBI	CYCGRG	1 cut(s)	260
Bsp1286I	GDGCHC	3 cut(s)	213, 255, 480
Bsp143I	GATC	6 cut(s)	174, 198, 328, 359, 591, 610
BspACI	CCGC	5 cut(s)	41, 165, 297, 317, 766
BspANI	GGCC	4 cut(s)	159, 290, 366, 419
BspCNI	CTCAG	2 cut(s)	369, 493
BspDI	ATCGAT	1 cut(s)	468
BspFNI	CGCG	1 cut(s)	41
BspLI	GGNNCC	7 cut(s)	181, 226, 336, 418, 457, 556, 672
BspPI	GGATC	3 cut(s)	336, 354, 618
BspT107I	GGYRCC	4 cut(s)	179, 224, 455, 554
BspTNI	GGTCTC	1 cut(s)	119
BsrFI	RCCGGY	2 cut(s)	293, 557
BsrI	ACTGG	1 cut(s)	160
BssAI	RCCGGY	2 cut(s)	293, 557
BssECI	CCNNGG	3 cut(s)	125, 151, 338
BssMI	GATC	6 cut(s)	174, 198, 328, 359, 591, 610
BssNI	GRCGYC	2 cut(s)	180, 456
BssT1I	CCWWGG	1 cut(s)	125
Bst2UI	CCWGG	2 cut(s)	152, 339
Bst4CI	ACNGT	2 cut(s)	64, 664
Bst6I	CTCTTC	1 cut(s)	582
BstACI	GRCGYC	2 cut(s)	180, 456
BstBAI	YACGTR	2 cut(s)	307, 314
BstC8I	GCNNGC	1 cut(s)	518
BstDEI	CTNAG	3 cut(s)	356, 501, 807
BstF5I	GGATG	4 cut(s)	31, 135, 147, 641
BstFNI	CGCG	1 cut(s)	41
BstH2I	RGCGCY	2 cut(s)	183, 459
BstHHI	GCGC	2 cut(s)	182, 458
BstKTI	GATC	6 cut(s)	177, 201, 331, 362, 594, 613
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	6 cut(s)	174, 198, 328, 359, 591, 610
BstMWI	GCNNNNNNNGC	2 cut(s)	165, 222
BstNI	CCWGG	2 cut(s)	152, 339
BstSCI	CCNGG	5 cut(s)	97, 150, 337, 419, 606
BstSNI	TACGTA	1 cut(s)	307
BstUI	CGCG	1 cut(s)	41
BstV2I	GAAGAC	1 cut(s)	628
BstX2I	RGATCY	2 cut(s)	328, 359
BstYI	RGATCY	2 cut(s)	328, 359
Bsu15I	ATCGAT	1 cut(s)	468
BsuRI	GGCC	4 cut(s)	159, 290, 366, 419
BsuTUI	ATCGAT	1 cut(s)	468
BtsCI	GGATG	4 cut(s)	31, 135, 147, 641
BtsIMutI	CAGTG	1 cut(s)	167
Cac8I	GCNNGC	1 cut(s)	518
CfoI	GCGC	2 cut(s)	182, 458
Cfr10I	RCCGGY	2 cut(s)	293, 557
Cfr13I	GGNCC	2 cut(s)	365, 417
ClaI	ATCGAT	1 cut(s)	468
CseI	GACGC	1 cut(s)	359
Csp6I	GTAC	4 cut(s)	235, 304, 308, 604
CviAII	CATG	1 cut(s)	568
CviQI	GTAC	4 cut(s)	235, 304, 308, 604
DdeI	CTNAG	3 cut(s)	356, 501, 807
DinI	GGCGCC	2 cut(s)	181, 457
DpnI	GATC	6 cut(s)	176, 200, 330, 361, 593, 612
DpnII	GATC	6 cut(s)	174, 198, 328, 359, 591, 610
Eam1104I	CTCTTC	1 cut(s)	582
EarI	CTCTTC	1 cut(s)	582
EciI	GGCGGA	1 cut(s)	312
Ecl136II	GAGCTC	1 cut(s)	253
Eco105I	TACGTA	1 cut(s)	307
Eco130I	CCWWGG	1 cut(s)	125
Eco24I	GRGCYC	1 cut(s)	255
Eco31I	GGTCTC	1 cut(s)	119
Eco32I	GATATC	1 cut(s)	757
Eco53kI	GAGCTC	1 cut(s)	253
Eco72I	CACGTG	1 cut(s)	314
Eco88I	CYCGRG	1 cut(s)	260
EcoICRI	GAGCTC	1 cut(s)	253
EcoRII	CCWGG	2 cut(s)	150, 337
EcoRV	GATATC	1 cut(s)	757
EcoT14I	CCWWGG	1 cut(s)	125
EcoT38I	GRGCYC	1 cut(s)	255
EgeI	GGCGCC	2 cut(s)	181, 457
EheI	GGCGCC	2 cut(s)	181, 457
ErhI	CCWWGG	1 cut(s)	125
FaeI	CATG	1 cut(s)	571
FaiI	YATR	7 cut(s)	326, 447, 535, 569, 676, 728, 753
FaqI	GGGAC	1 cut(s)	355
FatI	CATG	1 cut(s)	567
Fnu4HI	GCNGC	2 cut(s)	42, 166
FokI	GGATG	4 cut(s)	18, 134, 142, 628
FriOI	GRGCYC	1 cut(s)	255
Fsp4HI	GCNGC	2 cut(s)	42, 166
GlaI	GCGC	2 cut(s)	181, 457
GluI	GCNGC	2 cut(s)	42, 166
GsuI	CTGGAG	2 cut(s)	239, 353
HaeII	RGCGCY	2 cut(s)	183, 459
HaeIII	GGCC	4 cut(s)	159, 290, 366, 419
HapII	CCGG	7 cut(s)	99, 228, 294, 363, 420, 558, 608
HgaI	GACGC	1 cut(s)	359
HhaI	GCGC	2 cut(s)	182, 458
Hin1I	GRCGYC	2 cut(s)	180, 456
Hin1II	CATG	1 cut(s)	571
Hin6I	GCGC	2 cut(s)	180, 456
HinP1I	GCGC	2 cut(s)	180, 456
HincII	GTYRAC	1 cut(s)	624
HindII	GTYRAC	1 cut(s)	624
HinfI	GANTC	4 cut(s)	245, 267, 470, 525
HpaII	CCGG	7 cut(s)	99, 228, 294, 363, 420, 558, 608
Hpy166II	GTNNAC	1 cut(s)	624
Hpy188I	TCNGA	4 cut(s)	250, 359, 386, 658
Hpy188III	TCNNGA	2 cut(s)	116, 332
Hpy8I	GTNNAC	1 cut(s)	624
Hpy99I	CGWCG	2 cut(s)	209, 224
HpyAV	CCTTC	2 cut(s)	225, 294
HpyCH4III	ACNGT	2 cut(s)	64, 664
HpyCH4IV	ACGT	2 cut(s)	306, 313
HpyCH4V	TGCA	1 cut(s)	520
HpyF10VI	GCNNNNNNNGC	2 cut(s)	165, 222
HpyF3I	CTNAG	3 cut(s)	356, 501, 807
HpySE526I	ACGT	2 cut(s)	306, 313
Hsp92I	GRCGYC	2 cut(s)	180, 456
Hsp92II	CATG	1 cut(s)	571
HspAI	GCGC	2 cut(s)	180, 456
KasI	GGCGCC	2 cut(s)	179, 455
Kzo9I	GATC	6 cut(s)	174, 198, 328, 359, 591, 610
LmnI	GCTCC	3 cut(s)	258, 334, 670
LweI	GCATC	1 cut(s)	225
MaeII	ACGT	2 cut(s)	306, 313
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	6 cut(s)	176, 200, 330, 361, 593, 612
MboI	GATC	6 cut(s)	174, 198, 328, 359, 591, 610
MboII	GAAGA	2 cut(s)	569, 628
MfeI	CAATTG	1 cut(s)	427
MflI	RGATCY	2 cut(s)	328, 359
MhlI	GDGCHC	3 cut(s)	213, 255, 480
MluCI	AATT	2 cut(s)	427, 505
Mly113I	GGCGCC	2 cut(s)	180, 456
MlyI	GAGTC	1 cut(s)	239
MmeI	TCCRAC	1 cut(s)	807
MslI	CAYNNNNRTG	1 cut(s)	665
MspI	CCGG	7 cut(s)	99, 228, 294, 363, 420, 558, 608
MspR9I	CCNGG	5 cut(s)	99, 152, 339, 421, 608
MunI	CAATTG	1 cut(s)	427
MvaI	CCWGG	2 cut(s)	152, 339
MvnI	CGCG	1 cut(s)	41
MwoI	GCNNNNNNNGC	2 cut(s)	165, 222
NarI	GGCGCC	2 cut(s)	180, 456
NciI	CCSGG	3 cut(s)	99, 421, 608
NdeII	GATC	6 cut(s)	174, 198, 328, 359, 591, 610
NlaIII	CATG	1 cut(s)	571
NlaIV	GGNNCC	7 cut(s)	181, 226, 336, 418, 457, 556, 672
NmeAIII	GCCGAG	1 cut(s)	484
OliI	CACNNNNGTG	1 cut(s)	665
PaeR7I	CTCGAG	1 cut(s)	260
PcsI	WCGNNNNNNNCGW	1 cut(s)	246
PfeI	GAWTC	3 cut(s)	267, 470, 525
PflMI	CCANNNNNTGG	1 cut(s)	189
PkrI	GCNGC	2 cut(s)	43, 167
PleI	GAGTC	1 cut(s)	239
PluTI	GGCGCC	2 cut(s)	183, 459
PmaCI	CACGTG	1 cut(s)	314
PmlI	CACGTG	1 cut(s)	314
PpsI	GAGTC	1 cut(s)	239
Ppu21I	YACGTR	2 cut(s)	307, 314
Psp124BI	GAGCTC	1 cut(s)	255
Psp6I	CCWGG	2 cut(s)	150, 337
PspCI	CACGTG	1 cut(s)	314
PspGI	CCWGG	2 cut(s)	150, 337
PspN4I	GGNNCC	7 cut(s)	181, 226, 336, 418, 457, 556, 672
PspPI	GGNCC	2 cut(s)	365, 417
PspXI	VCTCGAGB	1 cut(s)	260
PsuI	RGATCY	2 cut(s)	328, 359
RsaI	GTAC	4 cut(s)	236, 305, 309, 605
RsaNI	GTAC	4 cut(s)	235, 304, 308, 604
RseI	CAYNNNNRTG	1 cut(s)	665
SacI	GAGCTC	1 cut(s)	255
SatI	GCNGC	2 cut(s)	42, 166
Sau3AI	GATC	6 cut(s)	174, 198, 328, 359, 591, 610
Sau96I	GGNCC	2 cut(s)	365, 417
SchI	GAGTC	1 cut(s)	239
ScrFI	CCNGG	5 cut(s)	99, 152, 339, 421, 608
SduI	GDGCHC	3 cut(s)	213, 255, 480
SfaNI	GCATC	1 cut(s)	225
SfoI	GGCGCC	2 cut(s)	181, 457
Sfr274I	CTCGAG	1 cut(s)	260
SgrAI	CRCCGGYG	1 cut(s)	293
SlaI	CTCGAG	1 cut(s)	260
SmiMI	CAYNNNNRTG	1 cut(s)	665
SmlI	CTYRAG	2 cut(s)	260, 773
SmoI	CTYRAG	2 cut(s)	260, 773
SnaBI	TACGTA	1 cut(s)	307
Sse9I	AATT	2 cut(s)	427, 505
SsiI	CCGC	5 cut(s)	41, 165, 297, 317, 766
SspDI	GGCGCC	2 cut(s)	179, 455
SstI	GAGCTC	1 cut(s)	255
StyD4I	CCNGG	5 cut(s)	97, 150, 337, 419, 606
StyI	CCWWGG	1 cut(s)	125
TaaI	ACNGT	2 cut(s)	64, 664
TaiI	ACGT	2 cut(s)	309, 316
TaqI	TCGA	7 cut(s)	117, 219, 261, 468, 480, 613, 708
TasI	AATT	2 cut(s)	427, 505
TauI	GCSGC	2 cut(s)	44, 168
TfiI	GAWTC	3 cut(s)	267, 470, 525
TscAI	CASTG	1 cut(s)	167
TspDTI	ATGAA	1 cut(s)	735
TspGWI	ACGGA	3 cut(s)	463, 464, 682
TspRI	CASTG	1 cut(s)	167
Van91I	CCANNNNNTGG	1 cut(s)	189
XhoI	CTCGAG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.