Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G62690 AT5G62700 |
| fragaria_vesca | FvH4_6g12290 |
| malus_domestica | MD04G1143700.v1.1 MD12G1158100.v1.1 |
| prunus_persica | Prupe.6G268300_v2.0.a1 |
| pyrus_communis | pycom04g13060 pycom05g25220 pycom06g07900 pycom07g24790 pycom11g07310 pycom12g15020 |
| rosa_chinensis | RchiOBHm_Chr3g0464121 |
| rosa_laevigata | RLG00000024721 |
| rosa_multiflora | Rmu_sc0010401.1_g000003 |
| rosa_roxburghii | Rroxscaffold_6G00415980 |
| rosa_rugosa | Rorug03G0070700 |
| rosa_wichuraiana | Rw3G010800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 153 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 243 |
| Acc16I | TGCGCA | 1 cut(s) | 904 |
| AccB1I | GGYRCC | 3 cut(s) | 50, 95, 287 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 60, 665 |
| AciI | CCGC | 3 cut(s) | 36, 1037, 1135 |
| AcoI | YGGCCR | 1 cut(s) | 277 |
| AcuI | CTGAAG | 2 cut(s) | 110, 238 |
| AcvI | CACGTG | 1 cut(s) | 827 |
| AcyI | GRCGYC | 1 cut(s) | 1091 |
| AfaI | GTAC | 6 cut(s) | 445, 548, 640, 842, 1193, 1274 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 60, 168, 665, 920, 951, 1076 |
| AgsI | TTSAA | 3 cut(s) | 459, 581, 1084 |
| AjnI | CCWGG | 4 cut(s) | 21, 182, 208, 1275 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 995, 1027 |
| Alw21I | GWGCWC | 4 cut(s) | 84, 351, 867, 968 |
| Alw26I | GTCTC | 2 cut(s) | 108, 529 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 533, 1232 |
| Ama87I | CYCGRG | 1 cut(s) | 131 |
| AoxI | GGCC | 5 cut(s) | 28, 159, 257, 277, 310 |
| ApeKI | GCWGC | 1 cut(s) | 905 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 12, 1032, 1178 |
| AspA2I | CCTAGG | 1 cut(s) | 415 |
| AspLEI | GCGC | 2 cut(s) | 77, 905 |
| AspS9I | GGNCC | 4 cut(s) | 199, 213, 236, 310 |
| AsuC2I | CCSGG | 2 cut(s) | 292, 729 |
| AsuHPI | GGTGA | 2 cut(s) | 859, 1211 |
| AvaI | CYCGRG | 1 cut(s) | 131 |
| AvaII | GGWCC | 3 cut(s) | 199, 213, 236 |
| AvrII | CCTAGG | 1 cut(s) | 415 |
| BaeGI | GKGCMC | 1 cut(s) | 183 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1183, 1216 |
| BalI | TGGCCA | 1 cut(s) | 279 |
| BanI | GGYRCC | 3 cut(s) | 50, 95, 287 |
| BanII | GRGCYC | 2 cut(s) | 850, 867 |
| BbrPI | CACGTG | 1 cut(s) | 827 |
| BbsI | GAAGAC | 1 cut(s) | 779 |
| Bbv12I | GWGCWC | 4 cut(s) | 84, 351, 867, 968 |
| BbvCI | CCTCAGC | 2 cut(s) | 940, 1290 |
| BbvI | GCAGC | 1 cut(s) | 917 |
| BccI | CCATC | 1 cut(s) | 1210 |
| BceAI | ACGGC | 4 cut(s) | 100, 109, 529, 1122 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 28, 62 |
| BciT130I | CCWGG | 4 cut(s) | 23, 184, 210, 1277 |
| BclI | TGATCA | 1 cut(s) | 990 |
| BcnI | CCSGG | 2 cut(s) | 292, 729 |
| BcoDI | GTCTC | 2 cut(s) | 108, 529 |
| BfaI | CTAG | 2 cut(s) | 416, 605 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 36 |
| BglII | AGATCT | 3 cut(s) | 230, 249, 670 |
| BisI | GCNGC | 2 cut(s) | 37, 906 |
| BlnI | CCTAGG | 1 cut(s) | 415 |
| BlpI | GCTNAGC | 1 cut(s) | 650 |
| BlsI | GCNGC | 2 cut(s) | 38, 907 |
| Bme1390I | CCNGG | 6 cut(s) | 23, 184, 210, 292, 729, 1277 |
| Bme18I | GGWCC | 3 cut(s) | 199, 213, 236 |
| BmeT110I | CYCGRG | 1 cut(s) | 131 |
| BmgT120I | GGNCC | 4 cut(s) | 199, 213, 236, 310 |
| BmiI | GGNNCC | 4 cut(s) | 52, 97, 214, 289 |
| BmrFI | CCNGG | 6 cut(s) | 23, 184, 210, 292, 729, 1277 |
| BmrI | ACTGGG | 2 cut(s) | 310, 438 |
| BmsI | GCATC | 5 cut(s) | 96, 480, 577, 874, 1270 |
| BmuI | ACTGGG | 2 cut(s) | 310, 438 |
| BpiI | GAAGAC | 1 cut(s) | 779 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 101, 133 |
| Bpu10I | CCTNAGC | 4 cut(s) | 306, 861, 940, 1290 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 650 |
| BpuEI | CTTGAG | 2 cut(s) | 224, 629 |
| BpuMI | CCSGG | 2 cut(s) | 292, 729 |
| BsaAI | YACGTR | 1 cut(s) | 827 |
| BsaHI | GRCGYC | 1 cut(s) | 1091 |
| BsaI | GGTCTC | 1 cut(s) | 529 |
| BsaWI | WCCGGW | 1 cut(s) | 98 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 995, 1025 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 60, 168, 665, 920, 951, 1076 |
| Bse1I | ACTGG | 6 cut(s) | 31, 162, 280, 305, 433, 1081 |
| BseBI | CCWGG | 4 cut(s) | 23, 184, 210, 1277 |
| BseGI | GGATG | 8 cut(s) | 18, 492, 771, 889, 1065, 1216, 1285, 1303 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 60, 168, 665, 920, 951, 1076 |
| BseMII | CTCAG | 7 cut(s) | 132, 540, 664, 852, 954, 1224, 1281 |
| BseNI | ACTGG | 6 cut(s) | 31, 162, 280, 305, 433, 1081 |
| BseRI | GAGGAG | 6 cut(s) | 435, 1003, 1307, 1331, 1334, 1337 |
| BseSI | GKGCMC | 1 cut(s) | 183 |
| BseXI | GCAGC | 1 cut(s) | 917 |
| BseYI | CCCAGC | 1 cut(s) | 870 |
| BshFI | GGCC | 5 cut(s) | 30, 161, 259, 279, 312 |
| BshNI | GGYRCC | 3 cut(s) | 50, 95, 287 |
| BsiHKAI | GWGCWC | 4 cut(s) | 84, 351, 867, 968 |
| BsiHKCI | CYCGRG | 1 cut(s) | 131 |
| BsiSI | CCGG | 3 cut(s) | 99, 291, 729 |
| BsiWI | CGTACG | 1 cut(s) | 638 |
| BslFI | GGGAC | 1 cut(s) | 226 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 60, 168, 665, 920, 951, 1076 |
| BsmAI | GTCTC | 2 cut(s) | 108, 529 |
| BsmFI | GGGAC | 1 cut(s) | 226 |
| BsnI | GGCC | 5 cut(s) | 30, 161, 259, 279, 312 |
| Bso31I | GGTCTC | 1 cut(s) | 529 |
| BsoBI | CYCGRG | 1 cut(s) | 131 |
| Bsp1286I | GDGCHC | 6 cut(s) | 84, 183, 351, 850, 867, 968 |
| Bsp143I | GATC | 6 cut(s) | 45, 230, 249, 462, 670, 990 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 650 |
| Bsp19I | CCATGG | 2 cut(s) | 216, 919 |
| BspACI | CCGC | 3 cut(s) | 36, 1037, 1135 |
| BspANI | GGCC | 5 cut(s) | 30, 161, 259, 279, 312 |
| BspCNI | CTCAG | 7 cut(s) | 131, 539, 663, 853, 953, 1225, 1282 |
| BspLI | GGNNCC | 4 cut(s) | 52, 97, 214, 289 |
| BspT107I | GGYRCC | 3 cut(s) | 50, 95, 287 |
| BspTNI | GGTCTC | 1 cut(s) | 529 |
| BsrI | ACTGG | 6 cut(s) | 31, 162, 280, 305, 433, 1081 |
| BssMI | GATC | 6 cut(s) | 45, 230, 249, 462, 670, 990 |
| BssNI | GRCGYC | 1 cut(s) | 1091 |
| BssT1I | CCWWGG | 5 cut(s) | 216, 415, 519, 919, 969 |
| Bst2UI | CCWGG | 4 cut(s) | 23, 184, 210, 1277 |
| Bst4CI | ACNGT | 6 cut(s) | 245, 535, 840, 856, 1057, 1272 |
| BstACI | GRCGYC | 1 cut(s) | 1091 |
| BstBAI | YACGTR | 1 cut(s) | 827 |
| BstC8I | GCNNGC | 2 cut(s) | 759, 1148 |
| BstDEI | CTNAG | 8 cut(s) | 118, 306, 526, 650, 861, 940, 1233, 1290 |
| BstDSI | CCRYGG | 2 cut(s) | 216, 919 |
| BstF5I | GGATG | 8 cut(s) | 18, 492, 771, 889, 1065, 1216, 1285, 1303 |
| BstHHI | GCGC | 2 cut(s) | 77, 905 |
| BstKTI | GATC | 6 cut(s) | 48, 233, 252, 465, 673, 993 |
| BstMAI | GTCTC | 2 cut(s) | 108, 529 |
| BstMBI | GATC | 6 cut(s) | 45, 230, 249, 462, 670, 990 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 36, 93, 660, 871, 1143 |
| BstNI | CCWGG | 4 cut(s) | 23, 184, 210, 1277 |
| BstNSI | RCATGY | 1 cut(s) | 714 |
| BstSCI | CCNGG | 6 cut(s) | 21, 182, 208, 290, 727, 1275 |
| BstSLI | GKGCMC | 1 cut(s) | 183 |
| BstV1I | GCAGC | 1 cut(s) | 917 |
| BstV2I | GAAGAC | 1 cut(s) | 779 |
| BstX2I | RGATCY | 3 cut(s) | 230, 249, 670 |
| BstYI | RGATCY | 3 cut(s) | 230, 249, 670 |
| BsuRI | GGCC | 5 cut(s) | 30, 161, 259, 279, 312 |
| BtgI | CCRYGG | 2 cut(s) | 216, 919 |
| BtsCI | GGATG | 8 cut(s) | 18, 492, 771, 889, 1065, 1216, 1285, 1303 |
| BtsI | GCAGTG | 1 cut(s) | 1155 |
| BtsIMutI | CAGTG | 7 cut(s) | 38, 531, 570, 852, 1053, 1074, 1155 |
| Cac8I | GCNNGC | 2 cut(s) | 759, 1148 |
| CaiI | CAGNNNCTG | 2 cut(s) | 533, 1232 |
| CfoI | GCGC | 2 cut(s) | 77, 905 |
| Cfr13I | GGNCC | 4 cut(s) | 199, 213, 236, 310 |
| CseI | GACGC | 2 cut(s) | 214, 1080 |
| Csp6I | GTAC | 6 cut(s) | 444, 547, 639, 841, 1192, 1273 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1084, 1119 |
| CviAII | CATG | 9 cut(s) | 196, 217, 711, 799, 895, 920, 946, 1207, 1243 |
| CviQI | GTAC | 6 cut(s) | 444, 547, 639, 841, 1192, 1273 |
| DdeI | CTNAG | 8 cut(s) | 118, 306, 526, 650, 861, 940, 1233, 1290 |
| DpnI | GATC | 6 cut(s) | 47, 232, 251, 464, 672, 992 |
| DpnII | GATC | 6 cut(s) | 45, 230, 249, 462, 670, 990 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 243 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 243 |
| EaeI | YGGCCR | 1 cut(s) | 277 |
| EciI | GGCGGA | 1 cut(s) | 1124 |
| Ecl136II | GAGCTC | 1 cut(s) | 865 |
| Eco130I | CCWWGG | 5 cut(s) | 216, 415, 519, 919, 969 |
| Eco147I | AGGCCT | 1 cut(s) | 259 |
| Eco24I | GRGCYC | 2 cut(s) | 850, 867 |
| Eco31I | GGTCTC | 1 cut(s) | 529 |
| Eco32I | GATATC | 1 cut(s) | 929 |
| Eco47I | GGWCC | 3 cut(s) | 199, 213, 236 |
| Eco53kI | GAGCTC | 1 cut(s) | 865 |
| Eco57I | CTGAAG | 2 cut(s) | 110, 238 |
| Eco72I | CACGTG | 1 cut(s) | 827 |
| Eco88I | CYCGRG | 1 cut(s) | 131 |
| EcoICRI | GAGCTC | 1 cut(s) | 865 |
| EcoRII | CCWGG | 4 cut(s) | 21, 182, 208, 1275 |
| EcoRV | GATATC | 1 cut(s) | 929 |
| EcoT14I | CCWWGG | 5 cut(s) | 216, 415, 519, 919, 969 |
| EcoT38I | GRGCYC | 2 cut(s) | 850, 867 |
| ErhI | CCWWGG | 5 cut(s) | 216, 415, 519, 919, 969 |
| FaeI | CATG | 9 cut(s) | 199, 220, 714, 802, 898, 923, 949, 1210, 1246 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1166, 1198 |
| FaqI | GGGAC | 1 cut(s) | 226 |
| FatI | CATG | 9 cut(s) | 195, 216, 710, 798, 894, 919, 945, 1206, 1242 |
| FbaI | TGATCA | 1 cut(s) | 990 |
| Fnu4HI | GCNGC | 2 cut(s) | 37, 906 |
| FokI | GGATG | 8 cut(s) | 5, 499, 758, 896, 1052, 1223, 1292, 1310 |
| FriOI | GRGCYC | 2 cut(s) | 850, 867 |
| Fsp4HI | GCNGC | 2 cut(s) | 37, 906 |
| FspBI | CTAG | 2 cut(s) | 416, 605 |
| FspI | TGCGCA | 1 cut(s) | 904 |
| GlaI | GCGC | 2 cut(s) | 76, 904 |
| GluI | GCNGC | 2 cut(s) | 37, 906 |
| GsaI | CCCAGC | 1 cut(s) | 874 |
| HaeIII | GGCC | 5 cut(s) | 30, 161, 259, 279, 312 |
| HapII | CCGG | 3 cut(s) | 99, 291, 729 |
| HgaI | GACGC | 2 cut(s) | 214, 1080 |
| HhaI | GCGC | 2 cut(s) | 77, 905 |
| Hin1I | GRCGYC | 1 cut(s) | 1091 |
| Hin1II | CATG | 9 cut(s) | 199, 220, 714, 802, 898, 923, 949, 1210, 1246 |
| Hin6I | GCGC | 2 cut(s) | 75, 903 |
| HinP1I | GCGC | 2 cut(s) | 75, 903 |
| HindIII | AAGCTT | 2 cut(s) | 661, 755 |
| HinfI | GANTC | 4 cut(s) | 116, 341, 723, 1033 |
| HpaII | CCGG | 3 cut(s) | 99, 291, 729 |
| HphI | GGTGA | 2 cut(s) | 859, 1211 |
| Hpy166II | GTNNAC | 5 cut(s) | 1053, 1095, 1155, 1194, 1224 |
| Hpy188III | TCNNGA | 7 cut(s) | 133, 234, 435, 605, 1124, 1168, 1334 |
| Hpy8I | GTNNAC | 5 cut(s) | 1053, 1095, 1155, 1194, 1224 |
| Hpy99I | CGWCG | 1 cut(s) | 95 |
| HpyAV | CCTTC | 6 cut(s) | 23, 96, 787, 1168, 1196, 1322 |
| HpyCH4III | ACNGT | 6 cut(s) | 245, 535, 840, 856, 1057, 1272 |
| HpyCH4IV | ACGT | 1 cut(s) | 826 |
| HpyCH4V | TGCA | 4 cut(s) | 554, 568, 692, 1186 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 36, 93, 660, 871, 1143 |
| HpyF3I | CTNAG | 8 cut(s) | 118, 306, 526, 650, 861, 940, 1233, 1290 |
| HpySE526I | ACGT | 1 cut(s) | 826 |
| Hsp92I | GRCGYC | 1 cut(s) | 1091 |
| Hsp92II | CATG | 9 cut(s) | 199, 220, 714, 802, 898, 923, 949, 1210, 1246 |
| HspAI | GCGC | 2 cut(s) | 75, 903 |
| Ksp22I | TGATCA | 1 cut(s) | 990 |
| Kzo9I | GATC | 6 cut(s) | 45, 230, 249, 462, 670, 990 |
| LmnI | GCTCC | 1 cut(s) | 817 |
| Lsp1109I | GCAGC | 1 cut(s) | 917 |
| LweI | GCATC | 5 cut(s) | 96, 480, 577, 874, 1270 |
| MaeI | CTAG | 2 cut(s) | 416, 605 |
| MaeII | ACGT | 1 cut(s) | 826 |
| MaeIII | GTNAC | 2 cut(s) | 706, 1061 |
| MalI | GATC | 6 cut(s) | 47, 232, 251, 464, 672, 992 |
| MboI | GATC | 6 cut(s) | 45, 230, 249, 462, 670, 990 |
| MboII | GAAGA | 3 cut(s) | 244, 482, 779 |
| MflI | RGATCY | 3 cut(s) | 230, 249, 670 |
| MhlI | GDGCHC | 6 cut(s) | 84, 183, 351, 850, 867, 968 |
| MlsI | TGGCCA | 1 cut(s) | 279 |
| MluCI | AATT | 4 cut(s) | 265, 332, 376, 1119 |
| MluNI | TGGCCA | 1 cut(s) | 279 |
| MlyI | GAGTC | 1 cut(s) | 110 |
| Mox20I | TGGCCA | 1 cut(s) | 279 |
| MroXI | GAANNNNTTC | 3 cut(s) | 12, 1032, 1178 |
| MscI | TGGCCA | 1 cut(s) | 279 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1160 |
| Msp20I | TGGCCA | 1 cut(s) | 279 |
| MspA1I | CMGCKG | 2 cut(s) | 908, 1289 |
| MspI | CCGG | 3 cut(s) | 99, 291, 729 |
| MspR9I | CCNGG | 6 cut(s) | 23, 184, 210, 292, 729, 1277 |
| MvaI | CCWGG | 4 cut(s) | 23, 184, 210, 1277 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 36, 93, 660, 871, 1143 |
| NciI | CCSGG | 2 cut(s) | 292, 729 |
| NcoI | CCATGG | 2 cut(s) | 216, 919 |
| NdeII | GATC | 6 cut(s) | 45, 230, 249, 462, 670, 990 |
| NlaIII | CATG | 9 cut(s) | 199, 220, 714, 802, 898, 923, 949, 1210, 1246 |
| NlaIV | GGNNCC | 4 cut(s) | 52, 97, 214, 289 |
| NmeAIII | GCCGAG | 2 cut(s) | 103, 397 |
| NmuCI | GTSAC | 2 cut(s) | 706, 1061 |
| NsbI | TGCGCA | 1 cut(s) | 904 |
| NspI | RCATGY | 1 cut(s) | 714 |
| PaeR7I | CTCGAG | 1 cut(s) | 131 |
| PasI | CCCWGGG | 1 cut(s) | 183 |
| PceI | AGGCCT | 1 cut(s) | 259 |
| PdmI | GAANNNNTTC | 3 cut(s) | 12, 1032, 1178 |
| PfeI | GAWTC | 3 cut(s) | 341, 723, 1033 |
| Pfl23II | CGTACG | 1 cut(s) | 638 |
| PflFI | GACNNNGTC | 1 cut(s) | 224 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 60, 665 |
| PkrI | GCNGC | 2 cut(s) | 38, 907 |
| PleI | GAGTC | 1 cut(s) | 110 |
| PmaCI | CACGTG | 1 cut(s) | 827 |
| PmlI | CACGTG | 1 cut(s) | 827 |
| PpsI | GAGTC | 1 cut(s) | 110 |
| Ppu21I | YACGTR | 1 cut(s) | 827 |
| PsiI | TTATAA | 1 cut(s) | 153 |
| Psp124BI | GAGCTC | 1 cut(s) | 867 |
| Psp6I | CCWGG | 4 cut(s) | 21, 182, 208, 1275 |
| PspCI | CACGTG | 1 cut(s) | 827 |
| PspFI | CCCAGC | 1 cut(s) | 870 |
| PspGI | CCWGG | 4 cut(s) | 21, 182, 208, 1275 |
| PspLI | CGTACG | 1 cut(s) | 638 |
| PspN4I | GGNNCC | 4 cut(s) | 52, 97, 214, 289 |
| PspPI | GGNCC | 4 cut(s) | 199, 213, 236, 310 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1001, 1033 |
| PstNI | CAGNNNCTG | 2 cut(s) | 533, 1232 |
| PsuI | RGATCY | 3 cut(s) | 230, 249, 670 |
| PsyI | GACNNNGTC | 1 cut(s) | 224 |
| PvuII | CAGCTG | 2 cut(s) | 908, 1289 |
| RsaI | GTAC | 6 cut(s) | 445, 548, 640, 842, 1193, 1274 |
| RsaNI | GTAC | 6 cut(s) | 444, 547, 639, 841, 1192, 1273 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1160 |
| SacI | GAGCTC | 1 cut(s) | 867 |
| SatI | GCNGC | 2 cut(s) | 37, 906 |
| Sau3AI | GATC | 6 cut(s) | 45, 230, 249, 462, 670, 990 |
| Sau96I | GGNCC | 4 cut(s) | 199, 213, 236, 310 |
| SchI | GAGTC | 1 cut(s) | 110 |
| ScrFI | CCNGG | 6 cut(s) | 23, 184, 210, 292, 729, 1277 |
| SduI | GDGCHC | 6 cut(s) | 84, 183, 351, 850, 867, 968 |
| SfaNI | GCATC | 5 cut(s) | 96, 480, 577, 874, 1270 |
| Sfr274I | CTCGAG | 1 cut(s) | 131 |
| SinI | GGWCC | 3 cut(s) | 199, 213, 236 |
| SlaI | CTCGAG | 1 cut(s) | 131 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1160 |
| SmlI | CTYRAG | 3 cut(s) | 131, 203, 644 |
| SmoI | CTYRAG | 3 cut(s) | 131, 203, 644 |
| Sse9I | AATT | 4 cut(s) | 265, 332, 376, 1119 |
| SseBI | AGGCCT | 1 cut(s) | 259 |
| SsiI | CCGC | 3 cut(s) | 36, 1037, 1135 |
| SspI | AATATT | 1 cut(s) | 1304 |
| SspMI | CTAG | 2 cut(s) | 416, 605 |
| SstI | GAGCTC | 1 cut(s) | 867 |
| StuI | AGGCCT | 1 cut(s) | 259 |
| StyD4I | CCNGG | 6 cut(s) | 21, 182, 208, 290, 727, 1275 |
| StyI | CCWWGG | 5 cut(s) | 216, 415, 519, 919, 969 |
| TaaI | ACNGT | 6 cut(s) | 245, 535, 840, 856, 1057, 1272 |
| TaiI | ACGT | 1 cut(s) | 829 |
| TaqI | TCGA | 4 cut(s) | 90, 132, 351, 1112 |
| TasI | AATT | 4 cut(s) | 265, 332, 376, 1119 |
| TatI | WGTACW | 1 cut(s) | 840 |
| TauI | GCSGC | 1 cut(s) | 39 |
| TfiI | GAWTC | 3 cut(s) | 341, 723, 1033 |
| TscAI | CASTG | 7 cut(s) | 38, 538, 570, 859, 1060, 1081, 1162 |
| TseFI | GTSAC | 2 cut(s) | 706, 1061 |
| TseI | GCWGC | 1 cut(s) | 905 |
| Tsp45I | GTSAC | 2 cut(s) | 706, 1061 |
| TspDTI | ATGAA | 5 cut(s) | 627, 787, 1090, 1259, 1314 |
| TspGWI | ACGGA | 1 cut(s) | 626 |
| TspRI | CASTG | 7 cut(s) | 38, 538, 570, 859, 1060, 1081, 1162 |
| Tth111I | GACNNNGTC | 1 cut(s) | 224 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 60, 665 |
| VpaK11BI | GGWCC | 3 cut(s) | 199, 213, 236 |
| XbaI | TCTAGA | 1 cut(s) | 604 |
| XceI | RCATGY | 1 cut(s) | 714 |
| XhoI | CTCGAG | 1 cut(s) | 131 |
| XmaJI | CCTAGG | 1 cut(s) | 415 |
| XmnI | GAANNNNTTC | 3 cut(s) | 12, 1032, 1178 |
| XspI | CTAG | 2 cut(s) | 416, 605 |