Rmu_sc0010401.1_g000003

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010401.1
OG0012720
Physical Location & Seq
Forward (+)
9325 .. 11529
2205 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010401.1_g000003.1.cds

Sequence Viewer

Length: 1104 bp
atgcgtgagattcttcacatccagggaggctctctctccgattctctctcctttcttcaatctctgaatttcgaatctcacttagccaagatgcgtgagattcttcacatccagggaggccagtgcggcaaccagatcggagccaagttctgggaggtcgtctgcgccgagcacggcatcgacgccaccggcaggtacgaaggcgactccgcgcttcagcttgagaggatcaatgtctactacaacgaggccagttgcggcaggttcgtccccagggctgtgctcatggatctcgagcctggcaccatggacagcgtcagatctggtccgtacggtcagatcttccgccctgacaacttcgtcttcggccagtccggcgccggaaacaactgggccaagggtcactacacagaaggagctgagctgatcgactcggttcttgatgtggttcgcaaggaggccgagaactgtgattgcctacaagggtttcaggtgtgccattcgcttggaggaggaactggatctggtatggggactctgttgatttcgaaaatcagggaggaataccctgacgaaggagctgagttgatcgactcggttcttgatgtggttcgcaaggaggccgagaactgtgattgcctacaagggtttcaggtgtgccattcgcttggaggaggaactggatctggtatggggactctgttgatttcgaaaatcagggaggaataccctgacaggatgatgctcactttctctgtgtttccgtcaccaaaagtctccgatacggtggttgagccctataatgctaccttgtctgtgcaccagcttgttgagaatgcggatgagtgtatggttcttgataacgaagctctctatgacatttgcttccgcacactcaagctcagtaccccaagctttggggatttgaaccatttgatttctgctaccatgtctggtgtgacttgctgtttgaggatccctgggcaactcaactctgacctcagaaagttggctgtcaatcgcattccattcccccgtctccactttttcatggcggggtttgctcctttgacctctcgtggttcacagatgtacagagcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04145 ko04540 ko05130 map04145 map04540 map05130
Pfam Domains
Protein Families
Tubulin Tubulin_C

Protein Analysis

367

Amino Acids

40.24

Weight (kDa)

5.1

Isoelectric Point (pI)

38.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012720)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62690 AT5G62700
fragaria_vesca FvH4_6g12290
malus_domestica MD04G1143700.v1.1 MD12G1158100.v1.1
prunus_persica Prupe.6G268300_v2.0.a1
pyrus_communis pycom04g13060 pycom05g25220 pycom06g07900 pycom07g24790 pycom11g07310 pycom12g15020
rosa_chinensis RchiOBHm_Chr3g0464121
rosa_laevigata RLG00000024721
rosa_multiflora Rmu_sc0010401.1_g000003
rosa_roxburghii Rroxscaffold_6G00415980
rosa_rugosa Rorug03G0070700
rosa_wichuraiana Rw3G010800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 359
Acc36I ACCTGC 2 cut(s) 183, 252
AccB1I GGYRCC 2 cut(s) 302, 377
AccB7I CCANNNNNTGG 2 cut(s) 150, 917
AccI GTMKAC 1 cut(s) 237
AccII CGCG 1 cut(s) 212
AciI CCGC 7 cut(s) 126, 210, 258, 346, 839, 889, 1055
AclWI GGATC 6 cut(s) 236, 297, 529, 691, 970, 983
AcoI YGGCCR 1 cut(s) 367
AcsI RAATTY 1 cut(s) 67
AcuI CTGAAG 1 cut(s) 200
AcyI GRCGYC 2 cut(s) 183, 378
AfaI GTAC 4 cut(s) 197, 332, 907, 1094
AfiI CCNNNNNNNGG 4 cut(s) 150, 192, 575, 917
AgsI TTSAA 2 cut(s) 59, 928
AjnI CCWGG 5 cut(s) 21, 111, 272, 298, 979
AluBI AGCT 8 cut(s) 220, 419, 424, 581, 826, 869, 901, 915
AluI AGCT 8 cut(s) 220, 419, 424, 581, 826, 869, 901, 915
Alw21I GWGCWC 3 cut(s) 174, 285, 822
Alw26I GTCTC 2 cut(s) 781, 1043
Alw44I GTGCAC 1 cut(s) 818
AlwI GGATC 6 cut(s) 236, 297, 529, 691, 970, 983
Ama87I CYCGRG 1 cut(s) 293
AoxI GGCC 6 cut(s) 118, 249, 367, 393, 459, 621
ApaLI GTGCAC 1 cut(s) 818
ApoI RAATTY 1 cut(s) 67
ArsI GACNNNNNNTTYG 2 cut(s) 952, 984
AspLEI GCGC 3 cut(s) 167, 214, 380
AspS9I GGNCC 2 cut(s) 326, 393
AsuHPI GGTGA 1 cut(s) 759
AsuII TTCGAA 3 cut(s) 72, 548, 710
AvaI CYCGRG 1 cut(s) 293
AvaII GGWCC 1 cut(s) 326
BaeGI GKGCMC 1 cut(s) 822
BaeI ACNNNNGTAYC 2 cut(s) 774, 807
BamHI GGATCC 1 cut(s) 975
BanI GGYRCC 2 cut(s) 302, 377
BanII GRGCYC 1 cut(s) 798
BauI CACGAG 1 cut(s) 1077
BbsI GAAGAC 1 cut(s) 355
Bbv12I GWGCWC 3 cut(s) 174, 285, 822
BceAI ACGGC 1 cut(s) 190
BcgI CGANNNNNNTGC 2 cut(s) 118, 152
BciT130I CCWGG 5 cut(s) 23, 113, 274, 300, 981
BcoDI GTCTC 2 cut(s) 781, 1043
BfaI CTAG 1 cut(s) 1102
BfoI RGCGCY 1 cut(s) 381
BfuAI ACCTGC 2 cut(s) 183, 252
BglI GCCNNNNNGGC 2 cut(s) 126, 375
BglII AGATCT 2 cut(s) 320, 339
BisI GCNGC 2 cut(s) 127, 259
BlpI GCTNAGC 1 cut(s) 420
BlsI GCNGC 2 cut(s) 128, 260
Bme1390I CCNGG 5 cut(s) 23, 113, 274, 300, 981
Bme18I GGWCC 1 cut(s) 326
BmeT110I CYCGRG 1 cut(s) 293
BmgT120I GGNCC 2 cut(s) 326, 393
BmiI GGNNCC 4 cut(s) 142, 304, 379, 977
BmrFI CCNGG 5 cut(s) 23, 113, 274, 300, 981
BmrI ACTGGG 1 cut(s) 400
BmsI GCATC 3 cut(s) 81, 186, 732
BmuI ACTGGG 1 cut(s) 400
BpiI GAAGAC 1 cut(s) 355
BplI GAGNNNNNCTC 2 cut(s) 18, 50
Bpu1102I GCTNAGC 1 cut(s) 420
Bpu14I TTCGAA 3 cut(s) 72, 548, 710
BpuEI CTTGAG 2 cut(s) 242, 881
BsaHI GRCGYC 2 cut(s) 183, 378
BsaJI CCNNGG 8 cut(s) 22, 112, 272, 273, 306, 396, 979, 980
Bsc4I CCNNNNNNNGG 4 cut(s) 150, 192, 575, 917
Bse118I RCCGGY 1 cut(s) 188
Bse1I ACTGG 6 cut(s) 121, 252, 370, 395, 523, 685
BseBI CCWGG 5 cut(s) 23, 113, 274, 300, 981
BseDI CCNNGG 8 cut(s) 22, 112, 272, 273, 306, 396, 979, 980
BseGI GGATG 4 cut(s) 18, 108, 744, 847
BseLI CCNNNNNNNGG 4 cut(s) 150, 192, 575, 917
BseMII CTCAG 4 cut(s) 411, 573, 916, 1015
BseNI ACTGG 6 cut(s) 121, 252, 370, 395, 523, 685
BseRI GAGGAG 2 cut(s) 525, 687
BseSI GKGCMC 1 cut(s) 822
Bsh1236I CGCG 1 cut(s) 212
BshFI GGCC 6 cut(s) 120, 251, 369, 395, 461, 623
BshNI GGYRCC 2 cut(s) 302, 377
BsiHKAI GWGCWC 3 cut(s) 174, 285, 822
BsiHKCI CYCGRG 1 cut(s) 293
BsiSI CCGG 3 cut(s) 189, 375, 381
BsiWI CGTACG 1 cut(s) 330
BslFI GGGAC 3 cut(s) 254, 547, 709
BslI CCNNNNNNNGG 4 cut(s) 150, 192, 575, 917
BsmAI GTCTC 2 cut(s) 781, 1043
BsmBI CGTCTC 1 cut(s) 1043
BsmFI GGGAC 3 cut(s) 254, 547, 709
BsmI GAATGC 2 cut(s) 841, 1023
BsnI GGCC 6 cut(s) 120, 251, 369, 395, 461, 623
BsoBI CYCGRG 1 cut(s) 293
Bsp119I TTCGAA 3 cut(s) 72, 548, 710
Bsp1286I GDGCHC 4 cut(s) 174, 285, 798, 822
Bsp1407I TGTACA 1 cut(s) 1092
Bsp1720I GCTNAGC 1 cut(s) 420
Bsp19I CCATGG 1 cut(s) 306
BspACI CCGC 7 cut(s) 126, 210, 258, 346, 839, 889, 1055
BspANI GGCC 6 cut(s) 120, 251, 369, 395, 461, 623
BspCNI CTCAG 4 cut(s) 412, 574, 915, 1014
BspFNI CGCG 1 cut(s) 212
BspLI GGNNCC 4 cut(s) 142, 304, 379, 977
BspMI ACCTGC 2 cut(s) 183, 252
BspPI GGATC 6 cut(s) 236, 297, 529, 691, 970, 983
BspT104I TTCGAA 3 cut(s) 72, 548, 710
BspT107I GGYRCC 2 cut(s) 302, 377
BsrFI RCCGGY 1 cut(s) 188
BsrGI TGTACA 1 cut(s) 1092
BsrI ACTGG 6 cut(s) 121, 252, 370, 395, 523, 685
BssAI RCCGGY 1 cut(s) 188
BssECI CCNNGG 8 cut(s) 22, 112, 272, 273, 306, 396, 979, 980
BssNI GRCGYC 2 cut(s) 183, 378
BssSI CACGAG 1 cut(s) 1077
BssT1I CCWWGG 2 cut(s) 306, 396
Bst2BI CACGAG 1 cut(s) 1077
Bst2UI CCWGG 5 cut(s) 23, 113, 274, 300, 981
Bst4CI ACNGT 4 cut(s) 335, 470, 632, 787
BstACI GRCGYC 2 cut(s) 183, 378
BstAUI TGTACA 1 cut(s) 1092
BstBI TTCGAA 3 cut(s) 72, 548, 710
BstDEI CTNAG 5 cut(s) 82, 420, 582, 902, 1001
BstDSI CCRYGG 1 cut(s) 306
BstENI CCTNNNNNAGG 1 cut(s) 573
BstF5I GGATG 4 cut(s) 18, 108, 744, 847
BstFNI CGCG 1 cut(s) 212
BstH2I RGCGCY 1 cut(s) 381
BstHHI GCGC 3 cut(s) 167, 214, 380
BstMAI GTCTC 2 cut(s) 781, 1043
BstMWI GCNNNNNNNGC 3 cut(s) 126, 375, 1061
BstNI CCWGG 5 cut(s) 23, 113, 274, 300, 981
BstSCI CCNGG 5 cut(s) 21, 111, 272, 298, 979
BstSLI GKGCMC 1 cut(s) 822
BstUI CGCG 1 cut(s) 212
BstV2I GAAGAC 1 cut(s) 355
BstX2I RGATCY 6 cut(s) 289, 320, 339, 521, 683, 975
BstXI CCANNNNNNTGG 2 cut(s) 506, 668
BstYI RGATCY 6 cut(s) 289, 320, 339, 521, 683, 975
BsuRI GGCC 6 cut(s) 120, 251, 369, 395, 461, 623
BtgI CCRYGG 1 cut(s) 306
BtsCI GGATG 4 cut(s) 18, 108, 744, 847
BtsIMutI CAGTG 1 cut(s) 128
BveI ACCTGC 2 cut(s) 183, 252
CfoI GCGC 3 cut(s) 167, 214, 380
Cfr10I RCCGGY 1 cut(s) 188
Cfr13I GGNCC 2 cut(s) 326, 393
CseI GACGC 2 cut(s) 191, 304
Csp6I GTAC 4 cut(s) 196, 331, 906, 1093
CviAII CATG 4 cut(s) 286, 307, 949, 1051
CviQI GTAC 4 cut(s) 196, 331, 906, 1093
DdeI CTNAG 5 cut(s) 82, 420, 582, 902, 1001
DinI GGCGCC 1 cut(s) 379
DrdI GACNNNNNNGTC 1 cut(s) 359
DseDI GACNNNNNNGTC 1 cut(s) 359
EaeI YGGCCR 1 cut(s) 367
EciI GGCGGA 1 cut(s) 335
Eco130I CCWWGG 2 cut(s) 306, 396
Eco24I GRGCYC 1 cut(s) 798
Eco47I GGWCC 1 cut(s) 326
Eco57I CTGAAG 1 cut(s) 200
Eco88I CYCGRG 1 cut(s) 293
EcoNI CCTNNNNNAGG 1 cut(s) 573
EcoRII CCWGG 5 cut(s) 21, 111, 272, 298, 979
EcoT14I CCWWGG 2 cut(s) 306, 396
EcoT38I GRGCYC 1 cut(s) 798
EgeI GGCGCC 1 cut(s) 379
EheI GGCGCC 1 cut(s) 379
ErhI CCWWGG 2 cut(s) 306, 396
Esp3I CGTCTC 1 cut(s) 1043
FaeI CATG 4 cut(s) 289, 310, 952, 1054
FaiI YATR 9 cut(s) 287, 308, 530, 692, 801, 851, 876, 950, 1052
FaqI GGGAC 3 cut(s) 254, 547, 709
FatI CATG 4 cut(s) 285, 306, 948, 1050
FauI CCCGC 1 cut(s) 1048
FblI GTMKAC 1 cut(s) 237
Fnu4HI GCNGC 2 cut(s) 127, 259
FokI GGATG 4 cut(s) 5, 95, 751, 854
FriOI GRGCYC 1 cut(s) 798
Fsp4HI GCNGC 2 cut(s) 127, 259
FspBI CTAG 1 cut(s) 1102
GlaI GCGC 3 cut(s) 166, 213, 379
GluI GCNGC 2 cut(s) 127, 259
HaeII RGCGCY 1 cut(s) 381
HaeIII GGCC 6 cut(s) 120, 251, 369, 395, 461, 623
HapII CCGG 3 cut(s) 189, 375, 381
HgaI GACGC 2 cut(s) 191, 304
HhaI GCGC 3 cut(s) 167, 214, 380
Hin1I GRCGYC 2 cut(s) 183, 378
Hin1II CATG 4 cut(s) 289, 310, 952, 1054
Hin6I GCGC 3 cut(s) 165, 212, 378
HinP1I GCGC 3 cut(s) 165, 212, 378
HindIII AAGCTT 1 cut(s) 913
HinfI GANTC 9 cut(s) 10, 41, 74, 100, 206, 431, 535, 593, 697
HpaII CCGG 3 cut(s) 189, 375, 381
HphI GGTGA 1 cut(s) 759
Hpy166II GTNNAC 3 cut(s) 238, 820, 1085
Hpy188I TCNGA 8 cut(s) 40, 66, 140, 320, 339, 781, 997, 1004
Hpy188III TCNNGA 4 cut(s) 293, 440, 602, 857
Hpy8I GTNNAC 3 cut(s) 238, 820, 1085
Hpy99I CGWCG 1 cut(s) 185
HpyAV CCTTC 3 cut(s) 194, 407, 569
HpyCH4III ACNGT 4 cut(s) 335, 470, 632, 787
HpyCH4V TGCA 1 cut(s) 820
HpyF10VI GCNNNNNNNGC 3 cut(s) 126, 375, 1061
HpyF3I CTNAG 5 cut(s) 82, 420, 582, 902, 1001
Hsp92I GRCGYC 2 cut(s) 183, 378
Hsp92II CATG 4 cut(s) 289, 310, 952, 1054
HspAI GCGC 3 cut(s) 165, 212, 378
KasI GGCGCC 1 cut(s) 377
LmnI GCTCC 4 cut(s) 140, 416, 578, 1069
LweI GCATC 3 cut(s) 81, 186, 732
MaeI CTAG 1 cut(s) 1102
MaeIII GTNAC 3 cut(s) 401, 765, 958
MboII GAAGA 5 cut(s) 5, 47, 95, 334, 355
MflI RGATCY 6 cut(s) 289, 320, 339, 521, 683, 975
MhlI GDGCHC 4 cut(s) 174, 285, 798, 822
MluCI AATT 1 cut(s) 67
Mly113I GGCGCC 1 cut(s) 378
MlyI GAGTC 5 cut(s) 200, 425, 529, 587, 691
MspI CCGG 3 cut(s) 189, 375, 381
MspR9I CCNGG 5 cut(s) 23, 113, 274, 300, 981
Mva1269I GAATGC 2 cut(s) 841, 1023
MvaI CCWGG 5 cut(s) 23, 113, 274, 300, 981
MvnI CGCG 1 cut(s) 212
MwoI GCNNNNNNNGC 3 cut(s) 126, 375, 1061
NarI GGCGCC 1 cut(s) 378
NcoI CCATGG 1 cut(s) 306
NlaIII CATG 4 cut(s) 289, 310, 952, 1054
NlaIV GGNNCC 4 cut(s) 142, 304, 379, 977
NmeAIII GCCGAG 3 cut(s) 193, 487, 649
NmuCI GTSAC 3 cut(s) 401, 765, 958
NspV TTCGAA 3 cut(s) 72, 548, 710
PaeR7I CTCGAG 1 cut(s) 293
PasI CCCWGGG 2 cut(s) 273, 980
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PctI GAATGC 2 cut(s) 841, 1023
PfeI GAWTC 4 cut(s) 10, 41, 74, 100
Pfl23II CGTACG 1 cut(s) 330
PflFI GACNNNGTC 1 cut(s) 314
PflMI CCANNNNNTGG 2 cut(s) 150, 917
PkrI GCNGC 2 cut(s) 128, 260
PleI GAGTC 5 cut(s) 200, 425, 529, 587, 691
PluTI GGCGCC 1 cut(s) 381
PpsI GAGTC 5 cut(s) 200, 425, 529, 587, 691
Psp6I CCWGG 5 cut(s) 21, 111, 272, 298, 979
PspGI CCWGG 5 cut(s) 21, 111, 272, 298, 979
PspLI CGTACG 1 cut(s) 330
PspN4I GGNNCC 4 cut(s) 142, 304, 379, 977
PspPI GGNCC 2 cut(s) 326, 393
PsuI RGATCY 6 cut(s) 289, 320, 339, 521, 683, 975
PsyI GACNNNGTC 1 cut(s) 314
RsaI GTAC 4 cut(s) 197, 332, 907, 1094
RsaNI GTAC 4 cut(s) 196, 331, 906, 1093
SatI GCNGC 2 cut(s) 127, 259
Sau96I GGNCC 2 cut(s) 326, 393
SchI GAGTC 5 cut(s) 200, 425, 529, 587, 691
ScrFI CCNGG 5 cut(s) 23, 113, 274, 300, 981
SduI GDGCHC 4 cut(s) 174, 285, 798, 822
SfaNI GCATC 3 cut(s) 81, 186, 732
SfoI GGCGCC 1 cut(s) 379
Sfr274I CTCGAG 1 cut(s) 293
SfuI TTCGAA 3 cut(s) 72, 548, 710
SinI GGWCC 1 cut(s) 326
SlaI CTCGAG 1 cut(s) 293
SmlI CTYRAG 3 cut(s) 221, 293, 896
SmoI CTYRAG 3 cut(s) 221, 293, 896
Sse9I AATT 1 cut(s) 67
SsiI CCGC 7 cut(s) 126, 210, 258, 346, 839, 889, 1055
SspDI GGCGCC 1 cut(s) 377
SspMI CTAG 1 cut(s) 1102
StyD4I CCNGG 5 cut(s) 21, 111, 272, 298, 979
StyI CCWWGG 2 cut(s) 306, 396
TaaI ACNGT 4 cut(s) 335, 470, 632, 787
TaqI TCGA 7 cut(s) 72, 180, 294, 429, 548, 591, 710
TasI AATT 1 cut(s) 67
TatI WGTACW 1 cut(s) 1092
TauI GCSGC 2 cut(s) 129, 261
TfiI GAWTC 4 cut(s) 10, 41, 74, 100
TscAI CASTG 1 cut(s) 128
TseFI GTSAC 3 cut(s) 401, 765, 958
Tsp45I GTSAC 3 cut(s) 401, 765, 958
TspDTI ATGAA 1 cut(s) 1039
TspGWI ACGGA 2 cut(s) 318, 753
TspRI CASTG 1 cut(s) 128
Tth111I GACNNNGTC 1 cut(s) 314
Van91I CCANNNNNTGG 2 cut(s) 150, 917
VneI GTGCAC 1 cut(s) 818
VpaK11BI GGWCC 1 cut(s) 326
XagI CCTNNNNNAGG 1 cut(s) 573
XapI RAATTY 1 cut(s) 67
XhoI CTCGAG 1 cut(s) 293
XmiI GTMKAC 1 cut(s) 237
XspI CTAG 1 cut(s) 1102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.