pycom07g24790

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0012720
Physical Location & Seq
Forward (+)
25351474 .. 25351821
348 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g24790.1

Sequence Viewer

Length: 348 bp
ATGCGTGAGATTCTCCACATCCAGGGAGGCCAGTGCGGCAACCAGATCGGCGCCAAGTTCTGGGAGGTCGTCTGCGCCGAGCACGGCATCGACTCCACCGGCCGATACCAGGGCGACAACGAGCTCCAGCTCGAGCGCGTCAATGTCTACTACAACGAGGCCAGTTGTGGGAGGTTTGTCCCACGCGCCGTCCTCATGGATCGATCAAATGTCTCGAGCCGGGAACCATGGACAGGATCAGATCTGGGCCATACGGCCAGATTTTCCGCCCAGATAACTTCGTTTTCGGCCAGTCCGGCGCCGGAAACAACTGGGCCAAGGGTCACTACACCGAAGGCGCCGAGTTGA

Protein Analysis

116

Amino Acids

12.58

Weight (kDa)

6.27

Isoelectric Point (pI)

34.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tubulin PF00091 3 - 68 1e-12 Tubulin/FtsZ family, GTPase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012720)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62690 AT5G62700
fragaria_vesca FvH4_6g12290
malus_domestica MD04G1143700.v1.1 MD12G1158100.v1.1
prunus_persica Prupe.6G268300_v2.0.a1
pyrus_communis pycom04g13060 pycom05g25220 pycom06g07900 pycom07g24790 pycom11g07310 pycom12g15020
rosa_chinensis RchiOBHm_Chr3g0464121
rosa_laevigata RLG00000024721
rosa_multiflora Rmu_sc0010401.1_g000003
rosa_roxburghii Rroxscaffold_6G00415980
rosa_rugosa Rorug03G0070700
rosa_wichuraiana Rw3G010800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 50, 298, 337
AccB7I CCANNNNNTGG 1 cut(s) 60
AccI GTMKAC 1 cut(s) 147
AccII CGCG 2 cut(s) 138, 186
AciI CCGC 2 cut(s) 36, 267
AclWI GGATC 2 cut(s) 207, 244
AcoI YGGCCR 3 cut(s) 100, 255, 288
AcyI GRCGYC 3 cut(s) 51, 299, 338
AfiI CCNNNNNNNGG 5 cut(s) 22, 60, 109, 168, 233
AjnI CCWGG 2 cut(s) 21, 108
AluBI AGCT 2 cut(s) 124, 130
AluI AGCT 2 cut(s) 124, 130
Alw21I GWGCWC 2 cut(s) 84, 126
Alw26I GTCTC 1 cut(s) 217
AlwI GGATC 2 cut(s) 207, 244
Ama87I CYCGRG 2 cut(s) 131, 214
AoxI GGCC 7 cut(s) 28, 100, 159, 247, 255, 288, 314
AspLEI GCGC 6 cut(s) 53, 77, 138, 188, 301, 340
AspS9I GGNCC 2 cut(s) 247, 314
AsuC2I CCSGG 1 cut(s) 221
AvaI CYCGRG 2 cut(s) 131, 214
BanI GGYRCC 3 cut(s) 50, 298, 337
BanII GRGCYC 1 cut(s) 126
Bbv12I GWGCWC 2 cut(s) 84, 126
BceAI ACGGC 3 cut(s) 100, 173, 270
BcgI CGANNNNNNTGC 2 cut(s) 28, 62
BciT130I CCWGG 2 cut(s) 23, 110
BcnI CCSGG 1 cut(s) 221
BcoDI GTCTC 1 cut(s) 217
BfoI RGCGCY 3 cut(s) 54, 302, 341
BglI GCCNNNNNGGC 2 cut(s) 36, 296
BglII AGATCT 1 cut(s) 241
BisI GCNGC 1 cut(s) 37
BlsI GCNGC 1 cut(s) 38
Bme1390I CCNGG 3 cut(s) 23, 110, 221
BmeT110I CYCGRG 2 cut(s) 131, 214
BmgT120I GGNCC 2 cut(s) 247, 314
BmiI GGNNCC 4 cut(s) 52, 225, 300, 339
BmrFI CCNGG 3 cut(s) 23, 110, 221
BmrI ACTGGG 1 cut(s) 321
BmsI GCATC 1 cut(s) 96
BmuI ACTGGG 1 cut(s) 321
BpmI CTGGAG 1 cut(s) 110
BpuMI CCSGG 1 cut(s) 221
Bsa29I ATCGAT 1 cut(s) 202
BsaHI GRCGYC 3 cut(s) 51, 299, 338
BsaJI CCNNGG 4 cut(s) 22, 109, 227, 317
Bsc4I CCNNNNNNNGG 5 cut(s) 22, 60, 109, 168, 233
Bse118I RCCGGY 1 cut(s) 98
Bse1I ACTGG 4 cut(s) 31, 162, 291, 316
BseBI CCWGG 2 cut(s) 23, 110
BseCI ATCGAT 1 cut(s) 202
BseDI CCNNGG 4 cut(s) 22, 109, 227, 317
BseGI GGATG 1 cut(s) 18
BseLI CCNNNNNNNGG 5 cut(s) 22, 60, 109, 168, 233
BseNI ACTGG 4 cut(s) 31, 162, 291, 316
BseX3I CGGCCG 1 cut(s) 100
Bsh1236I CGCG 2 cut(s) 138, 186
Bsh1285I CGRYCG 1 cut(s) 103
BshFI GGCC 7 cut(s) 30, 102, 161, 249, 257, 290, 316
BshNI GGYRCC 3 cut(s) 50, 298, 337
BshVI ATCGAT 1 cut(s) 202
BsiEI CGRYCG 1 cut(s) 103
BsiHKAI GWGCWC 2 cut(s) 84, 126
BsiHKCI CYCGRG 2 cut(s) 131, 214
BsiSI CCGG 4 cut(s) 99, 220, 296, 302
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 5 cut(s) 22, 60, 109, 168, 233
BsmAI GTCTC 1 cut(s) 217
BsmFI GGGAC 1 cut(s) 164
BsnI GGCC 7 cut(s) 30, 102, 161, 249, 257, 290, 316
BsoBI CYCGRG 2 cut(s) 131, 214
Bsp1286I GDGCHC 2 cut(s) 84, 126
Bsp143I GATC 5 cut(s) 45, 199, 203, 236, 241
Bsp19I CCATGG 1 cut(s) 227
BspACI CCGC 2 cut(s) 36, 267
BspANI GGCC 7 cut(s) 30, 102, 161, 249, 257, 290, 316
BspDI ATCGAT 1 cut(s) 202
BspFNI CGCG 2 cut(s) 138, 186
BspLI GGNNCC 4 cut(s) 52, 225, 300, 339
BspPI GGATC 2 cut(s) 207, 244
BspT107I GGYRCC 3 cut(s) 50, 298, 337
BsrFI RCCGGY 1 cut(s) 98
BsrI ACTGG 4 cut(s) 31, 162, 291, 316
BssAI RCCGGY 1 cut(s) 98
BssECI CCNNGG 4 cut(s) 22, 109, 227, 317
BssMI GATC 5 cut(s) 45, 199, 203, 236, 241
BssNI GRCGYC 3 cut(s) 51, 299, 338
BssT1I CCWWGG 2 cut(s) 227, 317
Bst2UI CCWGG 2 cut(s) 23, 110
BstACI GRCGYC 3 cut(s) 51, 299, 338
BstDSI CCRYGG 1 cut(s) 227
BstF5I GGATG 1 cut(s) 18
BstFNI CGCG 2 cut(s) 138, 186
BstH2I RGCGCY 3 cut(s) 54, 302, 341
BstHHI GCGC 6 cut(s) 53, 77, 138, 188, 301, 340
BstKTI GATC 5 cut(s) 48, 202, 206, 239, 244
BstMAI GTCTC 1 cut(s) 217
BstMBI GATC 5 cut(s) 45, 199, 203, 236, 241
BstMCI CGRYCG 1 cut(s) 103
BstMWI GCNNNNNNNGC 2 cut(s) 36, 296
BstNI CCWGG 2 cut(s) 23, 110
BstSCI CCNGG 3 cut(s) 21, 108, 219
BstUI CGCG 2 cut(s) 138, 186
BstX2I RGATCY 1 cut(s) 241
BstYI RGATCY 1 cut(s) 241
BstZI CGGCCG 1 cut(s) 100
Bsu15I ATCGAT 1 cut(s) 202
BsuRI GGCC 7 cut(s) 30, 102, 161, 249, 257, 290, 316
BsuTUI ATCGAT 1 cut(s) 202
BtgI CCRYGG 1 cut(s) 227
BtsCI GGATG 1 cut(s) 18
BtsIMutI CAGTG 1 cut(s) 38
CfoI GCGC 6 cut(s) 53, 77, 138, 188, 301, 340
Cfr10I RCCGGY 1 cut(s) 98
Cfr13I GGNCC 2 cut(s) 247, 314
ClaI ATCGAT 1 cut(s) 202
CseI GACGC 1 cut(s) 127
CviAII CATG 2 cut(s) 196, 228
DinI GGCGCC 3 cut(s) 52, 300, 339
DpnI GATC 5 cut(s) 47, 201, 205, 238, 243
DpnII GATC 5 cut(s) 45, 199, 203, 236, 241
EaeI YGGCCR 3 cut(s) 100, 255, 288
EagI CGGCCG 1 cut(s) 100
EciI GGCGGA 1 cut(s) 256
Ecl136II GAGCTC 1 cut(s) 124
EclXI CGGCCG 1 cut(s) 100
Eco130I CCWWGG 2 cut(s) 227, 317
Eco24I GRGCYC 1 cut(s) 126
Eco52I CGGCCG 1 cut(s) 100
Eco53kI GAGCTC 1 cut(s) 124
Eco88I CYCGRG 2 cut(s) 131, 214
EcoICRI GAGCTC 1 cut(s) 124
EcoRII CCWGG 2 cut(s) 21, 108
EcoT14I CCWWGG 2 cut(s) 227, 317
EcoT38I GRGCYC 1 cut(s) 126
EgeI GGCGCC 3 cut(s) 52, 300, 339
EheI GGCGCC 3 cut(s) 52, 300, 339
ErhI CCWWGG 2 cut(s) 227, 317
FaeI CATG 2 cut(s) 199, 231
FaiI YATR 3 cut(s) 197, 229, 252
FaqI GGGAC 1 cut(s) 164
FatI CATG 2 cut(s) 195, 227
FblI GTMKAC 1 cut(s) 147
Fnu4HI GCNGC 1 cut(s) 37
FokI GGATG 1 cut(s) 5
FriOI GRGCYC 1 cut(s) 126
Fsp4HI GCNGC 1 cut(s) 37
GlaI GCGC 6 cut(s) 52, 76, 137, 187, 300, 339
GluI GCNGC 1 cut(s) 37
GsuI CTGGAG 1 cut(s) 110
HaeII RGCGCY 3 cut(s) 54, 302, 341
HaeIII GGCC 7 cut(s) 30, 102, 161, 249, 257, 290, 316
HapII CCGG 4 cut(s) 99, 220, 296, 302
HgaI GACGC 1 cut(s) 127
HhaI GCGC 6 cut(s) 53, 77, 138, 188, 301, 340
Hin1I GRCGYC 3 cut(s) 51, 299, 338
Hin1II CATG 2 cut(s) 199, 231
Hin6I GCGC 6 cut(s) 51, 75, 136, 186, 299, 338
HinP1I GCGC 6 cut(s) 51, 75, 136, 186, 299, 338
HinfI GANTC 2 cut(s) 10, 92
HpaII CCGG 4 cut(s) 99, 220, 296, 302
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 1 cut(s) 241
Hpy188III TCNNGA 1 cut(s) 214
Hpy8I GTNNAC 1 cut(s) 148
HpyAV CCTTC 1 cut(s) 328
HpyF10VI GCNNNNNNNGC 2 cut(s) 36, 296
Hsp92I GRCGYC 3 cut(s) 51, 299, 338
Hsp92II CATG 2 cut(s) 199, 231
HspAI GCGC 6 cut(s) 51, 75, 136, 186, 299, 338
KasI GGCGCC 3 cut(s) 50, 298, 337
Kzo9I GATC 5 cut(s) 45, 199, 203, 236, 241
LmnI GCTCC 1 cut(s) 129
LweI GCATC 1 cut(s) 96
MaeIII GTNAC 1 cut(s) 322
MalI GATC 5 cut(s) 47, 201, 205, 238, 243
MboI GATC 5 cut(s) 45, 199, 203, 236, 241
MflI RGATCY 1 cut(s) 241
MhlI GDGCHC 2 cut(s) 84, 126
Mly113I GGCGCC 3 cut(s) 51, 299, 338
MlyI GAGTC 1 cut(s) 86
MnlI CCTC 5 cut(s) 20, 58, 151, 165, 203
MspI CCGG 4 cut(s) 99, 220, 296, 302
MspR9I CCNGG 3 cut(s) 23, 110, 221
MvaI CCWGG 2 cut(s) 23, 110
MvnI CGCG 2 cut(s) 138, 186
MwoI GCNNNNNNNGC 2 cut(s) 36, 296
NarI GGCGCC 3 cut(s) 51, 299, 338
NciI CCSGG 1 cut(s) 221
NcoI CCATGG 1 cut(s) 227
NdeII GATC 5 cut(s) 45, 199, 203, 236, 241
NlaIII CATG 2 cut(s) 199, 231
NlaIV GGNNCC 4 cut(s) 52, 225, 300, 339
NmeAIII GCCGAG 1 cut(s) 103
NmuCI GTSAC 1 cut(s) 322
PaeR7I CTCGAG 2 cut(s) 131, 214
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PfeI GAWTC 1 cut(s) 10
PflMI CCANNNNNTGG 1 cut(s) 60
PkrI GCNGC 1 cut(s) 38
PleI GAGTC 1 cut(s) 86
PluTI GGCGCC 3 cut(s) 54, 302, 341
PpsI GAGTC 1 cut(s) 86
Psp124BI GAGCTC 1 cut(s) 126
Psp6I CCWGG 2 cut(s) 21, 108
PspGI CCWGG 2 cut(s) 21, 108
PspN4I GGNNCC 4 cut(s) 52, 225, 300, 339
PspPI GGNCC 2 cut(s) 247, 314
PspXI VCTCGAGB 1 cut(s) 131
PsuI RGATCY 1 cut(s) 241
SacI GAGCTC 1 cut(s) 126
SatI GCNGC 1 cut(s) 37
Sau3AI GATC 5 cut(s) 45, 199, 203, 236, 241
Sau96I GGNCC 2 cut(s) 247, 314
SchI GAGTC 1 cut(s) 86
ScrFI CCNGG 3 cut(s) 23, 110, 221
SduI GDGCHC 2 cut(s) 84, 126
SetI ASST 4 cut(s) 69, 126, 132, 176
SfaNI GCATC 1 cut(s) 96
SfoI GGCGCC 3 cut(s) 52, 300, 339
Sfr274I CTCGAG 2 cut(s) 131, 214
SlaI CTCGAG 2 cut(s) 131, 214
SmlI CTYRAG 2 cut(s) 131, 214
SmoI CTYRAG 2 cut(s) 131, 214
SsiI CCGC 2 cut(s) 36, 267
SspDI GGCGCC 3 cut(s) 50, 298, 337
SstI GAGCTC 1 cut(s) 126
StyD4I CCNGG 3 cut(s) 21, 108, 219
StyI CCWWGG 2 cut(s) 227, 317
TaqI TCGA 4 cut(s) 90, 132, 202, 215
TauI GCSGC 1 cut(s) 39
TfiI GAWTC 1 cut(s) 10
TscAI CASTG 1 cut(s) 38
TseFI GTSAC 1 cut(s) 322
Tsp45I GTSAC 1 cut(s) 322
TspRI CASTG 1 cut(s) 38
Van91I CCANNNNNTGG 1 cut(s) 60
XhoI CTCGAG 2 cut(s) 131, 214
XmiI GTMKAC 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.