Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014572

Physical Location & Seq

Genomic Coordinates Reverse (-)

25256852 .. 25258704

Gene Structure 1853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G62940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGGTCTCACTTCTCTTCAAGTTTGCATGGATTCTGATTGGCTCCAGGAATCCGAGTCATCAGGAGGAAGCATGTTAGACTCTTCAACGAATTCTCCGTCAGCAGCCGACATACTAGCAGCTTGCAGCACTAGACCACAAGCCTCGGCCGTGGCTGTAGCCGCTGCAGCTCTGATGGACGGTGGAAGGAGGCTGCGTCCACCTCACGACCATCCTCAAAAGTGTCCTCGTTGCGAGTCAACACATACTAAGTTCTGTTACTACAATAACTACAGCCTCTCTCAGCCTCGTTACTTCTGCAAGACTTGTCGCCGTTACTGGACAAAAGGCGGAACTCTAAGGAATATTCCGGTTGGTGGTGGATGCCGTAAAAACAAGAAACCATCTTCCTCTAATTCCTCCTCCTCCACTTCTTCCGGCAAAAAACCATCCAACATCGTTACCGCCAATACCTCTGATCTTATGGCTTTAGCACATTCTCATCAAAATTACCAACATTCTCCTCTAGGGTTTTCACATTTTGGTGGGATGATGGGGTCTTACTCAACTCCGGAGCATGGTAACGTTGGTTTCTTGGAGAGCAAGTATGGCGGTTTGCTTTCGCAGAGCCCTAGACCTATTGATTTCTTGGACAGTAAGTTTGATCTCATGGGAGTGAACAATGACAACCTGGTCATGGTTAATCATGGAAGTAACGGAGATCATCATCATCATCATAATCATCACATGGGTCTGAATCACGGTGTAGGTCTTAACAACAACAACAACAATGGTGGATTTAATGGGATTTCTACGGGAGGCAATGGAAATGGTGGTGGTCTCATGGATATATCGACATGCCAAAGACTTATGCTATCTAATTATGATCATCACCATTACAATCATCAAGAAGATCATCAAAGGGTAGCAACAATAATGGATGTGAAGCCAAATCCGAAGTTGTTATCGCTTGATTGGCAGCAAGATCAATGCTACTCCAATGGTGGTGGTAGCGGAGGCGCAGGAAAATCCGACGGTGGTGGATACGGCAATGGTGGTTATATCAACGGTTTAGGTTCGTCGTGGAATGGTTTGATGAATGGCTATGGAACGTCCACTAAAACAAACTCCTTGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010065 GO:0010067 GO:0010087 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048316 GO:0048507 GO:0048508 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

372

Amino Acids

39.8

Weight (kDa)

8.28

Isoelectric Point (pI)

39.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	71 - 127	4.3e-33	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62940
fragaria_vesca	FvH4_5g05330
malus_domestica	MD06G1173600.v1.1 MD14G1180100.v1.1
prunus_persica	Prupe.5G173100_v2.0.a1
pyrus_communis	pycom06g15480 pycom14g14990
rosa_chinensis	RchiOBHm_Chr7g0193511
rosa_laevigata	RLG00000004265
rosa_multiflora	Rmu_sc0006688.1_g000002
rosa_roxburghii	Rroxscaffold_3G00262040
rosa_rugosa	Rorug07G0009900
rosa_samantha	Rh7AG136800 Rh7BG137100 Rh7CG140400 Rh7DG138200
rosa_wichuraiana	Rw7G011650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	671
AccIII	TCCGGA	1 cut(s)	550
AciI	CCGC	5 cut(s)	162, 330, 444, 591, 993
AclI	AACGTT	1 cut(s)	564
AcoI	YGGCCR	1 cut(s)	147
AcsI	RAATTY	1 cut(s)	91
AfiI	CCNNNNNNNGG	3 cut(s)	356, 557, 676
AgsI	TTSAA	2 cut(s)	20, 87
AjnI	CCWGG	2 cut(s)	45, 669
AluBI	AGCT	2 cut(s)	122, 170
AluI	AGCT	2 cut(s)	122, 170
Alw26I	GTCTC	2 cut(s)	11, 824
Aor13HI	TCCGGA	1 cut(s)	550
AoxI	GGCC	1 cut(s)	147
ApeKI	GCWGC	7 cut(s)	104, 119, 126, 164, 167, 193, 958
ApoI	RAATTY	1 cut(s)	91
ArsI	GACNNNNNNTTYG	4 cut(s)	83, 115, 623, 655
AspLEI	GCGC	1 cut(s)	1001
AsuHPI	GGTGA	1 cut(s)	863
BanII	GRGCYC	1 cut(s)	611
BbvI	GCAGC	7 cut(s)	116, 131, 138, 151, 179, 180, 970
BccI	CCATC	5 cut(s)	169, 219, 391, 436, 526
BceAI	ACGGC	4 cut(s)	134, 297, 351, 1042
BciT130I	CCWGG	2 cut(s)	47, 671
BciVI	GTATCC	1 cut(s)	1016
BclI	TGATCA	1 cut(s)	865
BcoDI	GTCTC	2 cut(s)	11, 824
BfaI	CTAG	4 cut(s)	116, 132, 506, 612
BfmI	CTRYAG	3 cut(s)	156, 165, 271
BfuI	GTATCC	1 cut(s)	1016
BisI	GCNGC	8 cut(s)	105, 120, 127, 162, 165, 168, 194, 959
BlsI	GCNGC	8 cut(s)	106, 121, 128, 163, 166, 169, 195, 960
Bme1390I	CCNGG	2 cut(s)	47, 671
BmiI	GGNNCC	1 cut(s)	44
BmrFI	CCNGG	2 cut(s)	47, 671
BmsI	GCATC	1 cut(s)	353
BpmI	CTGGAG	1 cut(s)	29
BsaBI	GATNNNNATC	1 cut(s)	705
BsaI	GGTCTC	2 cut(s)	11, 824
BsaJI	CCNNGG	3 cut(s)	144, 150, 1110
BsaWI	WCCGGW	2 cut(s)	349, 550
BsaXI	ACNNNNNCTCC	6 cut(s)	79, 109, 181, 211, 569, 599
Bsc4I	CCNNNNNNNGG	3 cut(s)	356, 557, 676
Bse1I	ACTGG	1 cut(s)	323
Bse3DI	GCAATG	2 cut(s)	808, 1036
Bse8I	GATNNNNATC	1 cut(s)	705
BseAI	TCCGGA	1 cut(s)	550
BseBI	CCWGG	2 cut(s)	47, 671
BseDI	CCNNGG	3 cut(s)	144, 150, 1110
BseGI	GGATG	5 cut(s)	211, 368, 428, 534, 925
BseJI	GATNNNNATC	1 cut(s)	705
BseLI	CCNNNNNNNGG	3 cut(s)	356, 557, 676
BseMI	GCAATG	2 cut(s)	808, 1036
BseMII	CTCAG	1 cut(s)	296
BseNI	ACTGG	1 cut(s)	323
BseRI	GAGGAG	3 cut(s)	391, 394, 492
BseX3I	CGGCCG	1 cut(s)	147
BseXI	GCAGC	7 cut(s)	116, 131, 138, 151, 179, 180, 970
Bsh1285I	CGRYCG	1 cut(s)	150
BshFI	GGCC	1 cut(s)	149
BsiEI	CGRYCG	1 cut(s)	150
BsiSI	CCGG	3 cut(s)	350, 417, 551
BslI	CCNNNNNNNGG	3 cut(s)	356, 557, 676
BsmAI	GTCTC	2 cut(s)	11, 824
BsnI	GGCC	1 cut(s)	149
Bso31I	GGTCTC	2 cut(s)	11, 824
Bsp1286I	GDGCHC	1 cut(s)	611
Bsp13I	TCCGGA	1 cut(s)	550
Bsp143I	GATC	6 cut(s)	457, 643, 700, 865, 892, 964
BspACI	CCGC	5 cut(s)	162, 330, 444, 591, 993
BspANI	GGCC	1 cut(s)	149
BspCNI	CTCAG	1 cut(s)	295
BspEI	TCCGGA	1 cut(s)	550
BspLI	GGNNCC	1 cut(s)	44
BspMAI	CTGCAG	1 cut(s)	169
BspTNI	GGTCTC	2 cut(s)	11, 824
BsrDI	GCAATG	2 cut(s)	808, 1036
BsrI	ACTGG	1 cut(s)	323
BssECI	CCNNGG	3 cut(s)	144, 150, 1110
BssMI	GATC	6 cut(s)	457, 643, 700, 865, 892, 964
BssT1I	CCWWGG	1 cut(s)	1110
Bst2UI	CCWGG	2 cut(s)	47, 671
Bst4CI	ACNGT	5 cut(s)	182, 635, 743, 1016, 1049
Bst6I	CTCTTC	2 cut(s)	21, 88
BstC8I	GCNNGC	1 cut(s)	124
BstDEI	CTNAG	3 cut(s)	249, 282, 338
BstDSI	CCRYGG	1 cut(s)	150
BstF5I	GGATG	5 cut(s)	211, 368, 428, 534, 925
BstHHI	GCGC	1 cut(s)	1001
BstKTI	GATC	6 cut(s)	460, 646, 703, 868, 895, 967
BstMAI	GTCTC	2 cut(s)	11, 824
BstMBI	GATC	6 cut(s)	457, 643, 700, 865, 892, 964
BstMCI	CGRYCG	1 cut(s)	150
BstMWI	GCNNNNNNNGC	4 cut(s)	161, 167, 588, 955
BstNI	CCWGG	2 cut(s)	47, 671
BstNSI	RCATGY	2 cut(s)	76, 840
BstSCI	CCNGG	2 cut(s)	45, 669
BstSFI	CTRYAG	3 cut(s)	156, 165, 271
BstV1I	GCAGC	7 cut(s)	116, 131, 138, 151, 179, 180, 970
BstZI	CGGCCG	1 cut(s)	147
BsuI	GTATCC	1 cut(s)	1016
BsuRI	GGCC	1 cut(s)	149
BtgI	CCRYGG	1 cut(s)	150
BtsCI	GGATG	5 cut(s)	211, 368, 428, 534, 925
Cac8I	GCNNGC	1 cut(s)	124
CfoI	GCGC	1 cut(s)	1001
CseI	GACGC	1 cut(s)	185
CsiI	ACCWGGT	1 cut(s)	669
CspCI	CAANNNNNGTGG	4 cut(s)	754, 789, 967, 1002
CviAII	CATG	9 cut(s)	28, 73, 557, 649, 676, 686, 727, 823, 837
DdeI	CTNAG	3 cut(s)	249, 282, 338
DpnI	GATC	6 cut(s)	459, 645, 702, 867, 894, 966
DpnII	GATC	6 cut(s)	457, 643, 700, 865, 892, 964
DrdI	GACNNNNNNGTC	1 cut(s)	671
DseDI	GACNNNNNNGTC	1 cut(s)	671
EaeI	YGGCCR	1 cut(s)	147
EagI	CGGCCG	1 cut(s)	147
Eam1104I	CTCTTC	2 cut(s)	21, 88
EarI	CTCTTC	2 cut(s)	21, 88
EciI	GGCGGA	1 cut(s)	345
EclXI	CGGCCG	1 cut(s)	147
Eco130I	CCWWGG	1 cut(s)	1110
Eco24I	GRGCYC	1 cut(s)	611
Eco31I	GGTCTC	2 cut(s)	11, 824
Eco52I	CGGCCG	1 cut(s)	147
EcoRI	GAATTC	1 cut(s)	91
EcoRII	CCWGG	2 cut(s)	45, 669
EcoT14I	CCWWGG	1 cut(s)	1110
EcoT38I	GRGCYC	1 cut(s)	611
ErhI	CCWWGG	1 cut(s)	1110
FaeI	CATG	9 cut(s)	31, 76, 560, 652, 679, 689, 730, 826, 840
FatI	CATG	9 cut(s)	27, 72, 556, 648, 675, 685, 726, 822, 836
FbaI	TGATCA	1 cut(s)	865
Fnu4HI	GCNGC	8 cut(s)	105, 120, 127, 162, 165, 168, 194, 959
FokI	GGATG	5 cut(s)	198, 375, 415, 541, 932
FriOI	GRGCYC	1 cut(s)	611
Fsp4HI	GCNGC	8 cut(s)	105, 120, 127, 162, 165, 168, 194, 959
FspBI	CTAG	4 cut(s)	116, 132, 506, 612
GlaI	GCGC	1 cut(s)	1000
GluI	GCNGC	8 cut(s)	105, 120, 127, 162, 165, 168, 194, 959
GsuI	CTGGAG	1 cut(s)	29
HaeIII	GGCC	1 cut(s)	149
HapII	CCGG	3 cut(s)	350, 417, 551
HgaI	GACGC	1 cut(s)	185
HhaI	GCGC	1 cut(s)	1001
Hin1II	CATG	9 cut(s)	31, 76, 560, 652, 679, 689, 730, 826, 840
Hin6I	GCGC	1 cut(s)	999
HinP1I	GCGC	1 cut(s)	999
HincII	GTYRAC	1 cut(s)	240
HindII	GTYRAC	1 cut(s)	240
HinfI	GANTC	6 cut(s)	32, 50, 56, 80, 236, 736
HpaII	CCGG	3 cut(s)	350, 417, 551
HphI	GGTGA	1 cut(s)	863
Hpy166II	GTNNAC	4 cut(s)	200, 240, 658, 1095
Hpy188I	TCNGA	7 cut(s)	37, 55, 174, 457, 735, 936, 1012
Hpy188III	TCNNGA	4 cut(s)	63, 206, 551, 887
Hpy8I	GTNNAC	4 cut(s)	200, 240, 658, 1095
Hpy99I	CGWCG	2 cut(s)	1016, 1063
HpyAV	CCTTC	1 cut(s)	180
HpyCH4III	ACNGT	5 cut(s)	182, 635, 743, 1016, 1049
HpyCH4IV	ACGT	2 cut(s)	564, 1091
HpyCH4V	TGCA	4 cut(s)	27, 126, 167, 300
HpyF10VI	GCNNNNNNNGC	4 cut(s)	161, 167, 588, 955
HpyF3I	CTNAG	3 cut(s)	249, 282, 338
HpySE526I	ACGT	2 cut(s)	564, 1091
Hsp92II	CATG	9 cut(s)	31, 76, 560, 652, 679, 689, 730, 826, 840
HspAI	GCGC	1 cut(s)	999
Kpn2I	TCCGGA	1 cut(s)	550
Ksp22I	TGATCA	1 cut(s)	865
Kzo9I	GATC	6 cut(s)	457, 643, 700, 865, 892, 964
LmnI	GCTCC	2 cut(s)	48, 553
Lsp1109I	GCAGC	7 cut(s)	116, 131, 138, 151, 179, 180, 970
LweI	GCATC	1 cut(s)	353
MabI	ACCWGGT	1 cut(s)	669
MaeI	CTAG	4 cut(s)	116, 132, 506, 612
MaeII	ACGT	2 cut(s)	564, 1091
MaeIII	GTNAC	6 cut(s)	257, 290, 314, 439, 560, 692
MalI	GATC	6 cut(s)	459, 645, 702, 867, 894, 966
MboI	GATC	6 cut(s)	457, 643, 700, 865, 892, 964
MboII	GAAGA	5 cut(s)	8, 75, 378, 405, 902
MhlI	GDGCHC	1 cut(s)	611
MluCI	AATT	4 cut(s)	91, 394, 487, 859
MlyI	GAGTC	3 cut(s)	65, 74, 245
MmeI	TCCRAC	2 cut(s)	456, 1035
MroI	TCCGGA	1 cut(s)	550
MseI	TTAA	3 cut(s)	681, 753, 780
MslI	CAYNNNNRTG	2 cut(s)	522, 653
MspA1I	CMGCKG	1 cut(s)	164
MspI	CCGG	3 cut(s)	350, 417, 551
MspR9I	CCNGG	2 cut(s)	47, 671
MvaI	CCWGG	2 cut(s)	47, 671
MwoI	GCNNNNNNNGC	4 cut(s)	161, 167, 588, 955
NdeII	GATC	6 cut(s)	457, 643, 700, 865, 892, 964
NlaIII	CATG	9 cut(s)	31, 76, 560, 652, 679, 689, 730, 826, 840
NlaIV	GGNNCC	1 cut(s)	44
NmeAIII	GCCGAG	1 cut(s)	125
NspI	RCATGY	2 cut(s)	76, 840
PcsI	WCGNNNNNNNCGW	1 cut(s)	95
PfeI	GAWTC	3 cut(s)	32, 50, 736
PfoI	TCCNGGA	1 cut(s)	45
PkrI	GCNGC	8 cut(s)	106, 121, 128, 163, 166, 169, 195, 960
PleI	GAGTC	3 cut(s)	64, 74, 244
PpsI	GAGTC	3 cut(s)	64, 74, 244
Psp1406I	AACGTT	1 cut(s)	564
Psp6I	CCWGG	2 cut(s)	45, 669
PspGI	CCWGG	2 cut(s)	45, 669
PspN4I	GGNNCC	1 cut(s)	44
PstI	CTGCAG	1 cut(s)	169
RseI	CAYNNNNRTG	2 cut(s)	522, 653
SaqAI	TTAA	3 cut(s)	681, 753, 780
SatI	GCNGC	8 cut(s)	105, 120, 127, 162, 165, 168, 194, 959
Sau3AI	GATC	6 cut(s)	457, 643, 700, 865, 892, 964
SchI	GAGTC	3 cut(s)	65, 74, 245
ScrFI	CCNGG	2 cut(s)	47, 671
SduI	GDGCHC	1 cut(s)	611
SexAI	ACCWGGT	1 cut(s)	669
SfaNI	GCATC	1 cut(s)	353
SfcI	CTRYAG	3 cut(s)	156, 165, 271
SmiMI	CAYNNNNRTG	2 cut(s)	522, 653
Sse9I	AATT	4 cut(s)	91, 394, 487, 859
SsiI	CCGC	5 cut(s)	162, 330, 444, 591, 993
SspI	AATATT	1 cut(s)	346
SspMI	CTAG	4 cut(s)	116, 132, 506, 612
StyD4I	CCNGG	2 cut(s)	45, 669
StyI	CCWWGG	1 cut(s)	1110
TaaI	ACNGT	5 cut(s)	182, 635, 743, 1016, 1049
TaiI	ACGT	2 cut(s)	567, 1094
TaqI	TCGA	1 cut(s)	833
TasI	AATT	4 cut(s)	91, 394, 487, 859
TauI	GCSGC	1 cut(s)	164
TfiI	GAWTC	3 cut(s)	32, 50, 736
Tru1I	TTAA	3 cut(s)	681, 753, 780
Tru9I	TTAA	3 cut(s)	681, 753, 780
TseI	GCWGC	7 cut(s)	104, 119, 126, 164, 167, 193, 958
TspDTI	ATGAA	1 cut(s)	1091
TspGWI	ACGGA	2 cut(s)	87, 711
XapI	RAATTY	1 cut(s)	91
XceI	RCATGY	2 cut(s)	76, 840
XspI	CTAG	4 cut(s)	116, 132, 506, 612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.