Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0014572

Physical Location & Seq

Genomic Coordinates Reverse (-)

19979612 .. 19981068

Gene Structure 1457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g15480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGGTCACAACTCTCTGCAAGTTTGCATGGATTCATCTGACTGGCTACAGGGAACGATTCACGAGGACTCCCCGATGGACTCATCCTCACCTTTATCCGGCGACATGTTAACGTGCTCGAGGCCGTTGATCGAGCGGAGGCTGAGGCCCCAGCACGACCAAGCCCTCAAGTGCCCTAGGTGCGAGTCCACCCACACCAAGTTTTGCTACTACAACAACTACAGCCTCTCCCAACCTAGGTACTTTTGCAAGACCTGCAGAAGGTACTGGACCAAAGGTGGAACCCTCAGAAACATCCCCGTGGGCGGCGGGTGTAGAAAGAACAAGAAAGTTTCTTCCAAGAAACCCAATGATCAGAACCCATCATCGCTGATGAACCAAAACTACCACCCCGGATCCTCCTCGTCATCGATATCTCACACCCCAACTGATCTCCACCTTTCATTTCCTGATCAGATGCAGTATTCACACCTCAATAACTTGATGCTTGGGAGTACTATGAACCCTAGTAGCTTCATGGACAACAGTAACCCTAGGCCTATTGATTTCATGGAGAGCAAGTTGGAGGCTATCGTGGGGAATGCTAGGAACTATGATTTCATGGGGAATGGTTCTGATTTGGGTATGATGGGTGGGTTTGAAAATAATATGGGAGGAGTTAGTCATGGATTAGATCATCAGTCAAGCTTTCATCACCATGGCCTGTGCTCATCTCCATTTGGGATGTCATCACTTGATGGGCAGAATGGTAATTTCATGGACAGTTGCCAGAGGCTAATGTTGCCATATGATCGATCAAATCATGAGCGATCATCATCAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010065 GO:0010067 GO:0010087 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048316 GO:0048507 GO:0048508 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

275

Amino Acids

30.67

Weight (kDa)

7.21

Isoelectric Point (pI)

55.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	53 - 110	4.5e-34	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62940
fragaria_vesca	FvH4_5g05330
malus_domestica	MD06G1173600.v1.1 MD14G1180100.v1.1
prunus_persica	Prupe.5G173100_v2.0.a1
pyrus_communis	pycom06g15480 pycom14g14990
rosa_chinensis	RchiOBHm_Chr7g0193511
rosa_laevigata	RLG00000004265
rosa_multiflora	Rmu_sc0006688.1_g000002
rosa_roxburghii	Rroxscaffold_3G00262040
rosa_rugosa	Rorug07G0009900
rosa_samantha	Rh7AG136800 Rh7BG137100 Rh7CG140400 Rh7DG138200
rosa_wichuraiana	Rw7G011650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	263
AccBSI	CCGCTC	1 cut(s)	136
AciI	CCGC	3 cut(s)	136, 306, 309
AclWI	GGATC	2 cut(s)	390, 403
AfaI	GTAC	3 cut(s)	242, 266, 496
AfiI	CCNNNNNNNGG	4 cut(s)	98, 237, 261, 305
AflIII	ACRYGT	1 cut(s)	105
AgsI	TTSAA	1 cut(s)	641
AluBI	AGCT	2 cut(s)	513, 687
AluI	AGCT	2 cut(s)	513, 687
Alw21I	GWGCWC	2 cut(s)	119, 710
AlwI	GGATC	2 cut(s)	390, 403
Ama87I	CYCGRG	1 cut(s)	118
AoxI	GGCC	4 cut(s)	122, 146, 536, 700
AspA2I	CCTAGG	3 cut(s)	176, 236, 533
AspS9I	GGNCC	2 cut(s)	147, 270
AsuC2I	CCSGG	1 cut(s)	393
AsuHPI	GGTGA	2 cut(s)	81, 686
AvaI	CYCGRG	1 cut(s)	118
AvaII	GGWCC	1 cut(s)	270
AvrII	CCTAGG	3 cut(s)	176, 236, 533
BaeGI	GKGCMC	1 cut(s)	176
BamHI	GGATCC	1 cut(s)	395
BauI	CACGAG	1 cut(s)	62
Bbv12I	GWGCWC	2 cut(s)	119, 710
BbvCI	CCTCAGC	1 cut(s)	143
BccI	CCATC	4 cut(s)	70, 370, 622, 731
BceAI	ACGGC	1 cut(s)	109
BclI	TGATCA	2 cut(s)	352, 451
BcnI	CCSGG	1 cut(s)	393
BfaI	CTAG	5 cut(s)	177, 237, 507, 534, 585
BfmI	CTRYAG	3 cut(s)	47, 220, 256
BfuAI	ACCTGC	1 cut(s)	263
BisI	GCNGC	1 cut(s)	307
BlnI	CCTAGG	3 cut(s)	176, 236, 533
BlsI	GCNGC	1 cut(s)	308
BmcAI	AGTACT	1 cut(s)	496
Bme1390I	CCNGG	1 cut(s)	393
Bme18I	GGWCC	1 cut(s)	270
BmeT110I	CYCGRG	1 cut(s)	118
BmgT120I	GGNCC	2 cut(s)	147, 270
BmiI	GGNNCC	3 cut(s)	149, 283, 397
BmrFI	CCNGG	1 cut(s)	393
BmsI	GCATC	2 cut(s)	447, 474
Bpu10I	CCTNAGC	1 cut(s)	143
BpuEI	CTTGAG	1 cut(s)	152
BpuMI	CCSGG	1 cut(s)	393
Bsa29I	ATCGAT	2 cut(s)	410, 793
BsaBI	GATNNNNATC	1 cut(s)	814
BsaJI	CCNNGG	6 cut(s)	176, 236, 300, 391, 533, 697
BsaXI	ACNNNNNCTCC	6 cut(s)	53, 83, 212, 242, 545, 575
Bsc4I	CCNNNNNNNGG	4 cut(s)	98, 237, 261, 305
Bse1I	ACTGG	2 cut(s)	47, 272
Bse8I	GATNNNNATC	1 cut(s)	814
BseCI	ATCGAT	2 cut(s)	410, 793
BseDI	CCNNGG	6 cut(s)	176, 236, 300, 391, 533, 697
BseGI	GGATG	3 cut(s)	83, 294, 729
BseJI	GATNNNNATC	1 cut(s)	814
BseLI	CCNNNNNNNGG	4 cut(s)	98, 237, 261, 305
BseMII	CTCAG	2 cut(s)	134, 301
BseNI	ACTGG	2 cut(s)	47, 272
BseRI	GAGGAG	2 cut(s)	391, 669
BseSI	GKGCMC	1 cut(s)	176
BseYI	CCCAGC	1 cut(s)	150
BshFI	GGCC	4 cut(s)	124, 148, 538, 702
BshVI	ATCGAT	2 cut(s)	410, 793
BsiHKAI	GWGCWC	2 cut(s)	119, 710
BsiHKCI	CYCGRG	1 cut(s)	118
BsiSI	CCGG	2 cut(s)	99, 393
BslI	CCNNNNNNNGG	4 cut(s)	98, 237, 261, 305
BsmI	GAATGC	1 cut(s)	586
BsnI	GGCC	4 cut(s)	124, 148, 538, 702
BsoBI	CYCGRG	1 cut(s)	118
Bsp1286I	GDGCHC	3 cut(s)	119, 176, 710
Bsp143I	GATC	9 cut(s)	129, 352, 395, 430, 451, 673, 790, 794, 809
Bsp19I	CCATGG	1 cut(s)	697
BspACI	CCGC	3 cut(s)	136, 306, 309
BspANI	GGCC	4 cut(s)	124, 148, 538, 702
BspCNI	CTCAG	2 cut(s)	135, 300
BspDI	ATCGAT	2 cut(s)	410, 793
BspHI	TCATGA	1 cut(s)	802
BspLI	GGNNCC	3 cut(s)	149, 283, 397
BspMAI	CTGCAG	1 cut(s)	260
BspMI	ACCTGC	1 cut(s)	263
BspPI	GGATC	2 cut(s)	390, 403
BsrBI	CCGCTC	1 cut(s)	136
BsrI	ACTGG	2 cut(s)	47, 272
BssECI	CCNNGG	6 cut(s)	176, 236, 300, 391, 533, 697
BssMI	GATC	9 cut(s)	129, 352, 395, 430, 451, 673, 790, 794, 809
BssSI	CACGAG	1 cut(s)	62
BssT1I	CCWWGG	4 cut(s)	176, 236, 533, 697
Bst2BI	CACGAG	1 cut(s)	62
Bst4CI	ACNGT	2 cut(s)	527, 764
BstAPI	GCANNNNNTGC	1 cut(s)	255
BstDEI	CTNAG	2 cut(s)	143, 287
BstDSI	CCRYGG	2 cut(s)	300, 697
BstENI	CCTNNNNNAGG	1 cut(s)	259
BstF5I	GGATG	3 cut(s)	83, 294, 729
BstKTI	GATC	9 cut(s)	132, 355, 398, 433, 454, 676, 793, 797, 812
BstMBI	GATC	9 cut(s)	129, 352, 395, 430, 451, 673, 790, 794, 809
BstMWI	GCNNNNNNNGC	3 cut(s)	180, 255, 781
BstNSI	RCATGY	1 cut(s)	109
BstSCI	CCNGG	1 cut(s)	391
BstSFI	CTRYAG	3 cut(s)	47, 220, 256
BstSLI	GKGCMC	1 cut(s)	176
BstX2I	RGATCY	1 cut(s)	395
BstYI	RGATCY	1 cut(s)	395
Bsu15I	ATCGAT	2 cut(s)	410, 793
BsuRI	GGCC	4 cut(s)	124, 148, 538, 702
BsuTUI	ATCGAT	2 cut(s)	410, 793
BtgI	CCRYGG	2 cut(s)	300, 697
BtgZI	GCGATG	1 cut(s)	351
BtsCI	GGATG	3 cut(s)	83, 294, 729
BveI	ACCTGC	1 cut(s)	263
CciI	TCATGA	1 cut(s)	802
Cfr13I	GGNCC	2 cut(s)	147, 270
ClaI	ATCGAT	2 cut(s)	410, 793
Csp6I	GTAC	3 cut(s)	241, 265, 495
CviAII	CATG	9 cut(s)	28, 106, 517, 550, 601, 665, 698, 757, 803
CviQI	GTAC	3 cut(s)	241, 265, 495
DdeI	CTNAG	2 cut(s)	143, 287
DpnI	GATC	9 cut(s)	131, 354, 397, 432, 453, 675, 792, 796, 811
DpnII	GATC	9 cut(s)	129, 352, 395, 430, 451, 673, 790, 794, 809
Eco130I	CCWWGG	4 cut(s)	176, 236, 533, 697
Eco147I	AGGCCT	1 cut(s)	538
Eco32I	GATATC	1 cut(s)	414
Eco47I	GGWCC	1 cut(s)	270
Eco88I	CYCGRG	1 cut(s)	118
EcoNI	CCTNNNNNAGG	1 cut(s)	259
EcoO109I	RGGNCCY	1 cut(s)	147
EcoRV	GATATC	1 cut(s)	414
EcoT14I	CCWWGG	4 cut(s)	176, 236, 533, 697
ErhI	CCWWGG	4 cut(s)	176, 236, 533, 697
FaeI	CATG	9 cut(s)	31, 109, 520, 553, 604, 668, 701, 760, 806
FatI	CATG	9 cut(s)	27, 105, 516, 549, 600, 664, 697, 756, 802
FauI	CCCGC	1 cut(s)	302
FauNDI	CATATG	1 cut(s)	787
FbaI	TGATCA	2 cut(s)	352, 451
Fnu4HI	GCNGC	1 cut(s)	307
FokI	GGATG	3 cut(s)	70, 281, 736
Fsp4HI	GCNGC	1 cut(s)	307
FspBI	CTAG	5 cut(s)	177, 237, 507, 534, 585
GluI	GCNGC	1 cut(s)	307
GsaI	CCCAGC	1 cut(s)	154
HaeIII	GGCC	4 cut(s)	124, 148, 538, 702
HapII	CCGG	2 cut(s)	99, 393
Hin1II	CATG	9 cut(s)	31, 109, 520, 553, 604, 668, 701, 760, 806
HincII	GTYRAC	1 cut(s)	111
HindII	GTYRAC	1 cut(s)	111
HindIII	AAGCTT	1 cut(s)	685
HinfI	GANTC	5 cut(s)	32, 58, 68, 80, 185
HpaI	GTTAAC	1 cut(s)	111
HpaII	CCGG	2 cut(s)	99, 393
HphI	GGTGA	2 cut(s)	81, 686
Hpy166II	GTNNAC	2 cut(s)	111, 189
Hpy188I	TCNGA	6 cut(s)	40, 290, 357, 456, 616, 820
Hpy188III	TCNNGA	3 cut(s)	62, 449, 803
Hpy8I	GTNNAC	2 cut(s)	111, 189
HpyAV	CCTTC	1 cut(s)	255
HpyCH4III	ACNGT	2 cut(s)	527, 764
HpyCH4IV	ACGT	1 cut(s)	113
HpyCH4V	TGCA	5 cut(s)	19, 27, 249, 258, 460
HpyF10VI	GCNNNNNNNGC	3 cut(s)	180, 255, 781
HpyF3I	CTNAG	2 cut(s)	143, 287
HpySE526I	ACGT	1 cut(s)	113
Hsp92II	CATG	9 cut(s)	31, 109, 520, 553, 604, 668, 701, 760, 806
Ksp22I	TGATCA	2 cut(s)	352, 451
KspAI	GTTAAC	1 cut(s)	111
Kzo9I	GATC	9 cut(s)	129, 352, 395, 430, 451, 673, 790, 794, 809
LweI	GCATC	2 cut(s)	447, 474
MaeI	CTAG	5 cut(s)	177, 237, 507, 534, 585
MaeII	ACGT	1 cut(s)	113
MaeIII	GTNAC	2 cut(s)	5, 527
MalI	GATC	9 cut(s)	131, 354, 397, 432, 453, 675, 792, 796, 811
MbiI	CCGCTC	1 cut(s)	136
MboI	GATC	9 cut(s)	129, 352, 395, 430, 451, 673, 790, 794, 809
MboII	GAAGA	1 cut(s)	327
MflI	RGATCY	1 cut(s)	395
MhlI	GDGCHC	3 cut(s)	119, 176, 710
MluCI	AATT	1 cut(s)	751
MlyI	GAGTC	3 cut(s)	62, 74, 194
MmeI	TCCRAC	1 cut(s)	543
MseI	TTAA	2 cut(s)	110, 823
MslI	CAYNNNNRTG	2 cut(s)	299, 696
MspI	CCGG	2 cut(s)	99, 393
MspR9I	CCNGG	1 cut(s)	393
Mva1269I	GAATGC	1 cut(s)	586
MwoI	GCNNNNNNNGC	3 cut(s)	180, 255, 781
NciI	CCSGG	1 cut(s)	393
NcoI	CCATGG	1 cut(s)	697
NdeI	CATATG	1 cut(s)	787
NdeII	GATC	9 cut(s)	129, 352, 395, 430, 451, 673, 790, 794, 809
NlaIII	CATG	9 cut(s)	31, 109, 520, 553, 604, 668, 701, 760, 806
NlaIV	GGNNCC	3 cut(s)	149, 283, 397
NmuCI	GTSAC	1 cut(s)	5
NspI	RCATGY	1 cut(s)	109
PaeR7I	CTCGAG	1 cut(s)	118
PagI	TCATGA	1 cut(s)	802
PceI	AGGCCT	1 cut(s)	538
PciI	ACATGT	1 cut(s)	105
PctI	GAATGC	1 cut(s)	586
PfeI	GAWTC	2 cut(s)	32, 58
PkrI	GCNGC	1 cut(s)	308
PleI	GAGTC	3 cut(s)	62, 74, 193
PpsI	GAGTC	3 cut(s)	62, 74, 193
PscI	ACATGT	1 cut(s)	105
PspFI	CCCAGC	1 cut(s)	150
PspN4I	GGNNCC	3 cut(s)	149, 283, 397
PspPI	GGNCC	2 cut(s)	147, 270
PspXI	VCTCGAGB	1 cut(s)	118
PsrI	GAACNNNNNNTAC	2 cut(s)	368, 400
PstI	CTGCAG	1 cut(s)	260
PsuI	RGATCY	1 cut(s)	395
RsaI	GTAC	3 cut(s)	242, 266, 496
RsaNI	GTAC	3 cut(s)	241, 265, 495
RseI	CAYNNNNRTG	2 cut(s)	299, 696
SaqAI	TTAA	2 cut(s)	110, 823
SatI	GCNGC	1 cut(s)	307
Sau3AI	GATC	9 cut(s)	129, 352, 395, 430, 451, 673, 790, 794, 809
Sau96I	GGNCC	2 cut(s)	147, 270
ScaI	AGTACT	1 cut(s)	496
SchI	GAGTC	3 cut(s)	62, 74, 194
ScrFI	CCNGG	1 cut(s)	393
SduI	GDGCHC	3 cut(s)	119, 176, 710
SfaNI	GCATC	2 cut(s)	447, 474
SfcI	CTRYAG	3 cut(s)	47, 220, 256
Sfr274I	CTCGAG	1 cut(s)	118
SinI	GGWCC	1 cut(s)	270
SlaI	CTCGAG	1 cut(s)	118
SmiMI	CAYNNNNRTG	2 cut(s)	299, 696
SmlI	CTYRAG	2 cut(s)	118, 167
SmoI	CTYRAG	2 cut(s)	118, 167
Sse9I	AATT	1 cut(s)	751
SseBI	AGGCCT	1 cut(s)	538
SsiI	CCGC	3 cut(s)	136, 306, 309
SspMI	CTAG	5 cut(s)	177, 237, 507, 534, 585
StuI	AGGCCT	1 cut(s)	538
StyD4I	CCNGG	1 cut(s)	391
StyI	CCWWGG	4 cut(s)	176, 236, 533, 697
TaaI	ACNGT	2 cut(s)	527, 764
TaiI	ACGT	1 cut(s)	116
TaqI	TCGA	4 cut(s)	119, 132, 410, 793
TasI	AATT	1 cut(s)	751
TatI	WGTACW	1 cut(s)	494
TauI	GCSGC	1 cut(s)	309
TfiI	GAWTC	2 cut(s)	32, 58
Tru1I	TTAA	2 cut(s)	110, 823
Tru9I	TTAA	2 cut(s)	110, 823
TseFI	GTSAC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	5
TspDTI	ATGAA	9 cut(s)	24, 389, 432, 505, 515, 538, 589, 680, 745
VpaK11BI	GGWCC	1 cut(s)	270
XagI	CCTNNNNNAGG	1 cut(s)	259
XceI	RCATGY	1 cut(s)	109
XhoI	CTCGAG	1 cut(s)	118
XmaJI	CCTAGG	3 cut(s)	176, 236, 533
XspI	CTAG	5 cut(s)	177, 237, 507, 534, 585
ZrmI	AGTACT	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.