Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0014572

Physical Location & Seq

Genomic Coordinates Forward (+)

56159821 .. 56162078

Gene Structure 2258 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00262040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGGTCATAATTCTCTACAAGTTTGCATGGATTCATCTGACTGGCTTCAGGGCTCGATTCACGAGGACCAGTCTCCTATGGACTCTTCGTCACCACTATCCGGCGACATCTTAACATGCTCAAGGCCCTTGATAGAGAGAAGGTTGAGGCCACCGCATGACCAATCCCTCAAGTGCCCTAGGTGCGACTCCACCCACACCAAGTTCTGCTACTACAATAACTACAGCCTCTCTCAGCCTAGGTACTTCTGCAAGACCTGTAGAAGGTACTGGACCAAAGGAGGTACACTCAGAAACATTCCTGTTGGTGGTGGTTGTAGAAAGAACAAGAAGGTTGCTTCCAAGAAACCCAATGAAGATCACAGTCCCTCCATGAACCCTAACCATCTTGGGTCGTCATCTTCGTCTTCTCAACACAACCCTACTGATCTCCAGCTCTCGTTCCCTGACCAGATGCAGTTTTCGCATCTGAATAACTTGATGCTTGGTGCTCAAGGGACAGGAAACAATAATTTCATGGATGGCAGGTATGGTAACATTAACGGAATGCTTGAGAATTCAAACCAGTTGAGGCCAATTGACTTCATGGAGAGTAAGTTGGAAGCTATAGTGGGGAATGCTAGGAACTATGATTTCATGGGGGGTGGTGGTGATAGTTTGGGTATGGTAGGTGGCCTTAGTAATATGGGGGCTCATGGACTGGAATCTGGCTTCCATGGTTTTTGTTCAAGTCCATTTGGATCAATGTCTCTTGATCATCATGGGAATAACAATGGGACTAATTTCATGGACACTTGCCAGAGGTTTATGTTGCCATATGAAGCAAATGAGGATCATCATCATCATCATCAAAATGATATTCATGATGTGAAGCCAAACACTAAGCTCTTGTCTCTTGAGTGGCAAGACCAAGGCTGCTCAGACGCCGGAAAAGAATCATCATATGGGTACCTCAATGGTCTCGGAACATGGACAGGCGTGATGAACAACTACGGGCCATCCACGACGAACTCATTAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010065 GO:0010067 GO:0010087 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048316 GO:0048507 GO:0048508 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

340

Amino Acids

37.63

Weight (kDa)

6.39

Isoelectric Point (pI)

42.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	54 - 111	6.6e-34	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62940
fragaria_vesca	FvH4_5g05330
malus_domestica	MD06G1173600.v1.1 MD14G1180100.v1.1
prunus_persica	Prupe.5G173100_v2.0.a1
pyrus_communis	pycom06g15480 pycom14g14990
rosa_chinensis	RchiOBHm_Chr7g0193511
rosa_laevigata	RLG00000004265
rosa_multiflora	Rmu_sc0006688.1_g000002
rosa_roxburghii	Rroxscaffold_3G00262040
rosa_rugosa	Rorug07G0009900
rosa_samantha	Rh7AG136800 Rh7BG137100 Rh7CG140400 Rh7DG138200
rosa_wichuraiana	Rw7G011650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	516
Acc65I	GGTACC	1 cut(s)	948
AccB1I	GGYRCC	1 cut(s)	948
AciI	CCGC	1 cut(s)	155
AclWI	GGATC	2 cut(s)	748, 840
AcsI	RAATTY	1 cut(s)	556
AcuI	CTGAAG	1 cut(s)	32
AcyI	GRCGYC	1 cut(s)	924
AfaI	GTAC	4 cut(s)	245, 269, 286, 950
AfiI	CCNNNNNNNGG	3 cut(s)	101, 264, 308
AgsI	TTSAA	2 cut(s)	561, 729
AhdI	GACNNNNNGTC	1 cut(s)	88
AluBI	AGCT	3 cut(s)	436, 605, 886
AluI	AGCT	3 cut(s)	436, 605, 886
Alw21I	GWGCWC	1 cut(s)	493
Alw26I	GTCTC	4 cut(s)	78, 753, 897, 965
AlwI	GGATC	2 cut(s)	748, 840
AoxI	GGCC	5 cut(s)	125, 149, 572, 673, 995
ApeKI	GCWGC	1 cut(s)	915
ApoI	RAATTY	1 cut(s)	556
Asp718I	GGTACC	1 cut(s)	948
AspA2I	CCTAGG	2 cut(s)	179, 239
AspS9I	GGNCC	4 cut(s)	67, 126, 273, 995
AsuHPI	GGTGA	2 cut(s)	84, 662
AvaII	GGWCC	2 cut(s)	67, 273
AvrII	CCTAGG	2 cut(s)	179, 239
BaeGI	GKGCMC	1 cut(s)	179
BanI	GGYRCC	1 cut(s)	948
BanII	GRGCYC	2 cut(s)	56, 694
BauI	CACGAG	1 cut(s)	62
BbsI	GAAGAC	1 cut(s)	399
Bbv12I	GWGCWC	1 cut(s)	493
BbvI	GCAGC	1 cut(s)	902
BccI	CCATC	3 cut(s)	393, 515, 1006
BclI	TGATCA	1 cut(s)	754
BcoDI	GTCTC	4 cut(s)	78, 753, 897, 965
BfaI	CTAG	3 cut(s)	180, 240, 621
BfmI	CTRYAG	3 cut(s)	223, 259, 606
BfuAI	ACCTGC	1 cut(s)	516
BisI	GCNGC	1 cut(s)	916
BlnI	CCTAGG	2 cut(s)	179, 239
BlsI	GCNGC	1 cut(s)	917
Bme18I	GGWCC	2 cut(s)	67, 273
BmeRI	GACNNNNNGTC	1 cut(s)	88
BmgT120I	GGNCC	4 cut(s)	67, 126, 273, 995
BmiI	GGNNCC	1 cut(s)	950
BmsI	GCATC	3 cut(s)	444, 471, 475
BpiI	GAAGAC	1 cut(s)	399
BplI	GAGNNNNNCTC	2 cut(s)	273, 305
BpmI	CTGGAG	1 cut(s)	416
BpuEI	CTTGAG	5 cut(s)	106, 155, 477, 572, 917
BsaBI	GATNNNNATC	1 cut(s)	837
BsaHI	GRCGYC	1 cut(s)	924
BsaI	GGTCTC	1 cut(s)	965
BsaJI	CCNNGG	4 cut(s)	179, 239, 715, 910
BsaXI	ACNNNNNCTCC	4 cut(s)	353, 383, 581, 611
Bsc4I	CCNNNNNNNGG	3 cut(s)	101, 264, 308
Bse1I	ACTGG	5 cut(s)	47, 70, 275, 565, 705
Bse8I	GATNNNNATC	1 cut(s)	837
BseDI	CCNNGG	4 cut(s)	179, 239, 715, 910
BseGI	GGATG	2 cut(s)	526, 998
BseJI	GATNNNNATC	1 cut(s)	837
BseLI	CCNNNNNNNGG	3 cut(s)	101, 264, 308
BseMII	CTCAG	3 cut(s)	248, 304, 933
BseNI	ACTGG	5 cut(s)	47, 70, 275, 565, 705
BseSI	GKGCMC	1 cut(s)	179
BseXI	GCAGC	1 cut(s)	902
BshFI	GGCC	5 cut(s)	127, 151, 574, 675, 997
BshNI	GGYRCC	1 cut(s)	948
BsiHKAI	GWGCWC	1 cut(s)	493
BsiSI	CCGG	2 cut(s)	102, 927
BslFI	GGGAC	3 cut(s)	351, 511, 790
BslI	CCNNNNNNNGG	3 cut(s)	101, 264, 308
BsmAI	GTCTC	4 cut(s)	78, 753, 897, 965
BsmFI	GGGAC	3 cut(s)	351, 511, 790
BsmI	GAATGC	2 cut(s)	552, 622
BsnI	GGCC	5 cut(s)	127, 151, 574, 675, 997
Bso31I	GGTCTC	1 cut(s)	965
Bsp1286I	GDGCHC	4 cut(s)	56, 179, 493, 694
Bsp143I	GATC	5 cut(s)	358, 427, 740, 754, 832
Bsp19I	CCATGG	1 cut(s)	715
BspACI	CCGC	1 cut(s)	155
BspANI	GGCC	5 cut(s)	127, 151, 574, 675, 997
BspCNI	CTCAG	3 cut(s)	247, 303, 932
BspHI	TCATGA	1 cut(s)	862
BspLI	GGNNCC	1 cut(s)	950
BspMI	ACCTGC	1 cut(s)	516
BspPI	GGATC	2 cut(s)	748, 840
BspT107I	GGYRCC	1 cut(s)	948
BspTNI	GGTCTC	1 cut(s)	965
BsrI	ACTGG	5 cut(s)	47, 70, 275, 565, 705
BssECI	CCNNGG	4 cut(s)	179, 239, 715, 910
BssMI	GATC	5 cut(s)	358, 427, 740, 754, 832
BssNI	GRCGYC	1 cut(s)	924
BssSI	CACGAG	1 cut(s)	62
BssT1I	CCWWGG	4 cut(s)	179, 239, 715, 910
Bst2BI	CACGAG	1 cut(s)	62
Bst4CI	ACNGT	1 cut(s)	365
Bst6I	CTCTTC	1 cut(s)	91
BstACI	GRCGYC	1 cut(s)	924
BstDEI	CTNAG	5 cut(s)	234, 290, 677, 882, 919
BstDSI	CCRYGG	1 cut(s)	715
BstENI	CCTNNNNNAGG	1 cut(s)	262
BstF5I	GGATG	2 cut(s)	526, 998
BstKTI	GATC	5 cut(s)	361, 430, 743, 757, 835
BstMAI	GTCTC	4 cut(s)	78, 753, 897, 965
BstMBI	GATC	5 cut(s)	358, 427, 740, 754, 832
BstMWI	GCNNNNNNNGC	2 cut(s)	183, 463
BstNSI	RCATGY	1 cut(s)	120
BstSFI	CTRYAG	3 cut(s)	223, 259, 606
BstSLI	GKGCMC	1 cut(s)	179
BstV1I	GCAGC	1 cut(s)	902
BstV2I	GAAGAC	1 cut(s)	399
BsuRI	GGCC	5 cut(s)	127, 151, 574, 675, 997
BtgI	CCRYGG	1 cut(s)	715
BtsCI	GGATG	2 cut(s)	526, 998
BveI	ACCTGC	1 cut(s)	516
CciI	TCATGA	1 cut(s)	862
Cfr13I	GGNCC	4 cut(s)	67, 126, 273, 995
CseI	GACGC	1 cut(s)	932
Csp6I	GTAC	4 cut(s)	244, 268, 285, 949
CviQI	GTAC	4 cut(s)	244, 268, 285, 949
DdeI	CTNAG	5 cut(s)	234, 290, 677, 882, 919
DpnI	GATC	5 cut(s)	360, 429, 742, 756, 834
DpnII	GATC	5 cut(s)	358, 427, 740, 754, 832
DriI	GACNNNNNGTC	1 cut(s)	88
Eam1104I	CTCTTC	1 cut(s)	91
Eam1105I	GACNNNNNGTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	91
Eco130I	CCWWGG	4 cut(s)	179, 239, 715, 910
Eco24I	GRGCYC	2 cut(s)	56, 694
Eco31I	GGTCTC	1 cut(s)	965
Eco47I	GGWCC	2 cut(s)	67, 273
Eco57I	CTGAAG	1 cut(s)	32
EcoNI	CCTNNNNNAGG	1 cut(s)	262
EcoO109I	RGGNCCY	1 cut(s)	126
EcoRI	GAATTC	1 cut(s)	556
EcoT14I	CCWWGG	4 cut(s)	179, 239, 715, 910
EcoT38I	GRGCYC	2 cut(s)	56, 694
ErhI	CCWWGG	4 cut(s)	179, 239, 715, 910
FaqI	GGGAC	3 cut(s)	351, 511, 790
FauNDI	CATATG	2 cut(s)	817, 943
FbaI	TGATCA	1 cut(s)	754
Fnu4HI	GCNGC	1 cut(s)	916
FokI	GGATG	2 cut(s)	533, 985
FriOI	GRGCYC	2 cut(s)	56, 694
Fsp4HI	GCNGC	1 cut(s)	916
FspBI	CTAG	3 cut(s)	180, 240, 621
GluI	GCNGC	1 cut(s)	916
GsuI	CTGGAG	1 cut(s)	416
HaeIII	GGCC	5 cut(s)	127, 151, 574, 675, 997
HapII	CCGG	2 cut(s)	102, 927
HgaI	GACGC	1 cut(s)	932
Hin1I	GRCGYC	1 cut(s)	924
HinfI	GANTC	6 cut(s)	32, 58, 83, 188, 704, 935
HpaII	CCGG	2 cut(s)	102, 927
HphI	GGTGA	2 cut(s)	84, 662
Hpy166II	GTNNAC	1 cut(s)	287
Hpy188I	TCNGA	5 cut(s)	40, 293, 471, 922, 965
Hpy188III	TCNNGA	4 cut(s)	62, 752, 863, 896
Hpy8I	GTNNAC	1 cut(s)	287
Hpy99I	CGWCG	1 cut(s)	1009
HpyAV	CCTTC	3 cut(s)	135, 258, 325
HpyCH4III	ACNGT	1 cut(s)	365
HpyCH4V	TGCA	3 cut(s)	27, 252, 457
HpyF10VI	GCNNNNNNNGC	2 cut(s)	183, 463
HpyF3I	CTNAG	5 cut(s)	234, 290, 677, 882, 919
Hsp92I	GRCGYC	1 cut(s)	924
KpnI	GGTACC	1 cut(s)	952
Ksp22I	TGATCA	1 cut(s)	754
Kzo9I	GATC	5 cut(s)	358, 427, 740, 754, 832
Lsp1109I	GCAGC	1 cut(s)	902
LweI	GCATC	3 cut(s)	444, 471, 475
MaeI	CTAG	3 cut(s)	180, 240, 621
MaeIII	GTNAC	2 cut(s)	90, 533
MalI	GATC	5 cut(s)	360, 429, 742, 756, 834
MboI	GATC	5 cut(s)	358, 427, 740, 754, 832
MboII	GAAGA	4 cut(s)	78, 368, 393, 399
MfeI	CAATTG	1 cut(s)	576
MhlI	GDGCHC	4 cut(s)	56, 179, 493, 694
MluCI	AATT	5 cut(s)	10, 511, 556, 576, 781
MlyI	GAGTC	2 cut(s)	77, 182
MmeI	TCCRAC	1 cut(s)	579
MseI	TTAA	2 cut(s)	113, 540
MslI	CAYNNNNRTG	1 cut(s)	852
MspI	CCGG	2 cut(s)	102, 927
MunI	CAATTG	1 cut(s)	576
Mva1269I	GAATGC	2 cut(s)	552, 622
MwoI	GCNNNNNNNGC	2 cut(s)	183, 463
NcoI	CCATGG	1 cut(s)	715
NdeI	CATATG	2 cut(s)	817, 943
NdeII	GATC	5 cut(s)	358, 427, 740, 754, 832
NlaIV	GGNNCC	1 cut(s)	950
NmuCI	GTSAC	1 cut(s)	90
NspI	RCATGY	1 cut(s)	120
PagI	TCATGA	1 cut(s)	862
PcsI	WCGNNNNNNNCGW	1 cut(s)	401
PctI	GAATGC	2 cut(s)	552, 622
PfeI	GAWTC	4 cut(s)	32, 58, 704, 935
PkrI	GCNGC	1 cut(s)	917
PleI	GAGTC	2 cut(s)	77, 182
PpsI	GAGTC	2 cut(s)	77, 182
PspN4I	GGNNCC	1 cut(s)	950
PspPI	GGNCC	4 cut(s)	67, 126, 273, 995
RsaI	GTAC	4 cut(s)	245, 269, 286, 950
RsaNI	GTAC	4 cut(s)	244, 268, 285, 949
RseI	CAYNNNNRTG	1 cut(s)	852
SaqAI	TTAA	2 cut(s)	113, 540
SatI	GCNGC	1 cut(s)	916
Sau3AI	GATC	5 cut(s)	358, 427, 740, 754, 832
Sau96I	GGNCC	4 cut(s)	67, 126, 273, 995
SchI	GAGTC	2 cut(s)	77, 182
SduI	GDGCHC	4 cut(s)	56, 179, 493, 694
SfaNI	GCATC	3 cut(s)	444, 471, 475
SfcI	CTRYAG	3 cut(s)	223, 259, 606
SinI	GGWCC	2 cut(s)	67, 273
SmiMI	CAYNNNNRTG	1 cut(s)	852
SmlI	CTYRAG	5 cut(s)	121, 170, 492, 551, 896
SmoI	CTYRAG	5 cut(s)	121, 170, 492, 551, 896
Sse9I	AATT	5 cut(s)	10, 511, 556, 576, 781
SsiI	CCGC	1 cut(s)	155
SspMI	CTAG	3 cut(s)	180, 240, 621
StyI	CCWWGG	4 cut(s)	179, 239, 715, 910
TaaI	ACNGT	1 cut(s)	365
TaqI	TCGA	1 cut(s)	56
TasI	AATT	5 cut(s)	10, 511, 556, 576, 781
TfiI	GAWTC	4 cut(s)	32, 58, 704, 935
Tru1I	TTAA	2 cut(s)	113, 540
Tru9I	TTAA	2 cut(s)	113, 540
TseFI	GTSAC	1 cut(s)	90
TseI	GCWGC	1 cut(s)	915
Tsp45I	GTSAC	1 cut(s)	90
TspGWI	ACGGA	1 cut(s)	558
VpaK11BI	GGWCC	2 cut(s)	67, 273
XagI	CCTNNNNNAGG	1 cut(s)	262
XapI	RAATTY	1 cut(s)	556
XceI	RCATGY	1 cut(s)	120
XmaJI	CCTAGG	2 cut(s)	179, 239
XspI	CTAG	3 cut(s)	180, 240, 621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.