Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0014572

Physical Location & Seq

Genomic Coordinates Reverse (-)

10924193 .. 10927028

Gene Structure 2836 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG136800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGACTCTATCTGTATATCCATTTCAGGGCTCGATTCACGAGGACCAGTCTCCGATGGACTCTTCGTCACCACTATCCGGCGACATCTTAACATGCTCAAGGCCCTTGATAGAGAGAAGGTTGAGGCCACCACATGACCAATCCCTCAAGTGCCCTAGGTGCGACTCCACCCACACCAAGTTCTGCTACTACAATAACTACAGCCTCTCTCAGCCTAGGTACTTCTGCAAGACCTGTAGAAGGTACTGGACCAAAGGAGGTACACTCAGAAACATTCCTGTTGGTGGTGGTTGTAGAAAGAACAAGAAGGTTGCTTCCAAGAAACCCAATGAAGATCACAGTCCCTCCATGAACCCTAACCATCTTGGGTCGTCATCTTCGTCTTCTCAACACAACCCTACTGATCTCCAGCTCTCGTTCCCGGACCAGATGCAGTTTTCGCATCTGAATAACTTGATGCTTGGTGCTCAAGGGACAGGAAACCCTAATTTCATGGATGGCAGGTATGGTAACATTAACGGTATGCTTGAGAATTCAAACCAGTTGAGGCCAATTGACTTCATGGAGAGTAAGTTGGAAGCTATAGTGGGGAATGCTAGGAACTATGATTTCATGGGGAGTGGTGGTGATAGTTTGGGTATGGTAGGTGGCCTTAGTAATATGGGGGCTCATGGACTGGAATCTGGCTTCCATGGTTTTTGTTCTAGTCCATTTGGATCAATGTCTCTTGATCATCATGGGAATAACAATGGGACTAATTTCATGGACACTTGCCAGAGGTTAATGTTGCCATATGAAGCAAATGAGGATCATCACCATCATCAAAATGAAATTCATGATGTGAAGCCAAACGCTAAGCTCTTGTCTCTTGAGTGGCAAGACCAAGGCTGCTCAGACGCCGGAAAAGAATCATCATATGGGTACCTCAATGGTCTCGGAACATGGACAGGCGTGATGAACAACTACGGGCCATCCACGACGAACCCATTAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010065 GO:0010067 GO:0010087 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048316 GO:0048507 GO:0048508 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

331

Amino Acids

36.6

Weight (kDa)

6.58

Isoelectric Point (pI)

39.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	46 - 103	6.3e-34	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62940
fragaria_vesca	FvH4_5g05330
malus_domestica	MD06G1173600.v1.1 MD14G1180100.v1.1
prunus_persica	Prupe.5G173100_v2.0.a1
pyrus_communis	pycom06g15480 pycom14g14990
rosa_chinensis	RchiOBHm_Chr7g0193511
rosa_laevigata	RLG00000004265
rosa_multiflora	Rmu_sc0006688.1_g000002
rosa_roxburghii	Rroxscaffold_3G00262040
rosa_rugosa	Rorug07G0009900
rosa_samantha	Rh7AG136800 Rh7BG137100 Rh7CG140400 Rh7DG138200
rosa_wichuraiana	Rw7G011650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	492
Acc65I	GGTACC	1 cut(s)	921
AccB1I	GGYRCC	1 cut(s)	921
AclWI	GGATC	2 cut(s)	724, 816
AcsI	RAATTY	2 cut(s)	532, 831
AcyI	GRCGYC	1 cut(s)	897
AfaI	GTAC	4 cut(s)	221, 245, 262, 923
AfiI	CCNNNNNNNGG	4 cut(s)	26, 77, 240, 284
AgsI	TTSAA	1 cut(s)	537
AhdI	GACNNNNNGTC	1 cut(s)	64
AluBI	AGCT	3 cut(s)	412, 581, 859
AluI	AGCT	3 cut(s)	412, 581, 859
Alw21I	GWGCWC	1 cut(s)	469
Alw26I	GTCTC	4 cut(s)	54, 729, 870, 938
AlwI	GGATC	2 cut(s)	724, 816
AoxI	GGCC	5 cut(s)	101, 125, 548, 649, 968
ApeKI	GCWGC	1 cut(s)	888
ApoI	RAATTY	2 cut(s)	532, 831
Asp718I	GGTACC	1 cut(s)	921
AspA2I	CCTAGG	2 cut(s)	155, 215
AspS9I	GGNCC	5 cut(s)	43, 102, 249, 424, 968
AsuC2I	CCSGG	1 cut(s)	422
AsuHPI	GGTGA	3 cut(s)	60, 638, 806
AvaII	GGWCC	3 cut(s)	43, 249, 424
AvrII	CCTAGG	2 cut(s)	155, 215
BaeGI	GKGCMC	1 cut(s)	155
BanI	GGYRCC	1 cut(s)	921
BanII	GRGCYC	2 cut(s)	32, 670
BauI	CACGAG	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	375
Bbv12I	GWGCWC	1 cut(s)	469
BbvI	GCAGC	1 cut(s)	875
BccI	CCATC	5 cut(s)	49, 369, 491, 825, 979
BclI	TGATCA	1 cut(s)	730
BcnI	CCSGG	1 cut(s)	422
BcoDI	GTCTC	4 cut(s)	54, 729, 870, 938
BfaI	CTAG	4 cut(s)	156, 216, 597, 705
BfmI	CTRYAG	3 cut(s)	199, 235, 582
BfuAI	ACCTGC	1 cut(s)	492
BisI	GCNGC	1 cut(s)	889
BlnI	CCTAGG	2 cut(s)	155, 215
BlpI	GCTNAGC	1 cut(s)	855
BlsI	GCNGC	1 cut(s)	890
Bme1390I	CCNGG	1 cut(s)	422
Bme18I	GGWCC	3 cut(s)	43, 249, 424
BmeRI	GACNNNNNGTC	1 cut(s)	64
BmgT120I	GGNCC	5 cut(s)	43, 102, 249, 424, 968
BmiI	GGNNCC	1 cut(s)	923
BmrFI	CCNGG	1 cut(s)	422
BmsI	GCATC	3 cut(s)	420, 447, 451
BpiI	GAAGAC	1 cut(s)	375
BplI	GAGNNNNNCTC	2 cut(s)	249, 281
BpmI	CTGGAG	1 cut(s)	392
Bpu1102I	GCTNAGC	1 cut(s)	855
BpuEI	CTTGAG	5 cut(s)	82, 131, 453, 548, 890
BpuMI	CCSGG	1 cut(s)	422
BsaHI	GRCGYC	1 cut(s)	897
BsaI	GGTCTC	1 cut(s)	938
BsaJI	CCNNGG	4 cut(s)	155, 215, 691, 883
BsaXI	ACNNNNNCTCC	6 cut(s)	329, 359, 557, 587, 610, 640
Bsc4I	CCNNNNNNNGG	4 cut(s)	26, 77, 240, 284
Bse1I	ACTGG	4 cut(s)	46, 251, 541, 681
BseDI	CCNNGG	4 cut(s)	155, 215, 691, 883
BseGI	GGATG	2 cut(s)	502, 971
BseLI	CCNNNNNNNGG	4 cut(s)	26, 77, 240, 284
BseMII	CTCAG	3 cut(s)	224, 280, 906
BseNI	ACTGG	4 cut(s)	46, 251, 541, 681
BseSI	GKGCMC	1 cut(s)	155
BseXI	GCAGC	1 cut(s)	875
BshFI	GGCC	5 cut(s)	103, 127, 550, 651, 970
BshNI	GGYRCC	1 cut(s)	921
BsiHKAI	GWGCWC	1 cut(s)	469
BsiSI	CCGG	3 cut(s)	78, 422, 900
BslFI	GGGAC	3 cut(s)	327, 487, 766
BslI	CCNNNNNNNGG	4 cut(s)	26, 77, 240, 284
BsmAI	GTCTC	4 cut(s)	54, 729, 870, 938
BsmFI	GGGAC	3 cut(s)	327, 487, 766
BsmI	GAATGC	1 cut(s)	598
BsnI	GGCC	5 cut(s)	103, 127, 550, 651, 970
Bso31I	GGTCTC	1 cut(s)	938
Bsp1286I	GDGCHC	4 cut(s)	32, 155, 469, 670
Bsp143I	GATC	5 cut(s)	334, 403, 716, 730, 808
Bsp1720I	GCTNAGC	1 cut(s)	855
Bsp19I	CCATGG	1 cut(s)	691
BspANI	GGCC	5 cut(s)	103, 127, 550, 651, 970
BspCNI	CTCAG	3 cut(s)	223, 279, 905
BspHI	TCATGA	1 cut(s)	835
BspLI	GGNNCC	1 cut(s)	923
BspMI	ACCTGC	1 cut(s)	492
BspPI	GGATC	2 cut(s)	724, 816
BspT107I	GGYRCC	1 cut(s)	921
BspTNI	GGTCTC	1 cut(s)	938
BsrI	ACTGG	4 cut(s)	46, 251, 541, 681
BssECI	CCNNGG	4 cut(s)	155, 215, 691, 883
BssMI	GATC	5 cut(s)	334, 403, 716, 730, 808
BssNI	GRCGYC	1 cut(s)	897
BssSI	CACGAG	1 cut(s)	38
BssT1I	CCWWGG	4 cut(s)	155, 215, 691, 883
Bst2BI	CACGAG	1 cut(s)	38
Bst4CI	ACNGT	2 cut(s)	341, 521
Bst6I	CTCTTC	1 cut(s)	67
BstACI	GRCGYC	1 cut(s)	897
BstDEI	CTNAG	5 cut(s)	210, 266, 653, 855, 892
BstDSI	CCRYGG	1 cut(s)	691
BstENI	CCTNNNNNAGG	1 cut(s)	238
BstF5I	GGATG	2 cut(s)	502, 971
BstKTI	GATC	5 cut(s)	337, 406, 719, 733, 811
BstMAI	GTCTC	4 cut(s)	54, 729, 870, 938
BstMBI	GATC	5 cut(s)	334, 403, 716, 730, 808
BstMWI	GCNNNNNNNGC	2 cut(s)	159, 439
BstNSI	RCATGY	1 cut(s)	96
BstSCI	CCNGG	1 cut(s)	420
BstSFI	CTRYAG	3 cut(s)	199, 235, 582
BstSLI	GKGCMC	1 cut(s)	155
BstV1I	GCAGC	1 cut(s)	875
BstV2I	GAAGAC	1 cut(s)	375
BsuRI	GGCC	5 cut(s)	103, 127, 550, 651, 970
BtgI	CCRYGG	1 cut(s)	691
BtsCI	GGATG	2 cut(s)	502, 971
BveI	ACCTGC	1 cut(s)	492
CciI	TCATGA	1 cut(s)	835
Cfr13I	GGNCC	5 cut(s)	43, 102, 249, 424, 968
CseI	GACGC	1 cut(s)	905
Csp6I	GTAC	4 cut(s)	220, 244, 261, 922
CviQI	GTAC	4 cut(s)	220, 244, 261, 922
DdeI	CTNAG	5 cut(s)	210, 266, 653, 855, 892
DpnI	GATC	5 cut(s)	336, 405, 718, 732, 810
DpnII	GATC	5 cut(s)	334, 403, 716, 730, 808
DriI	GACNNNNNGTC	1 cut(s)	64
Eam1104I	CTCTTC	1 cut(s)	67
Eam1105I	GACNNNNNGTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	67
Eco130I	CCWWGG	4 cut(s)	155, 215, 691, 883
Eco24I	GRGCYC	2 cut(s)	32, 670
Eco31I	GGTCTC	1 cut(s)	938
Eco47I	GGWCC	3 cut(s)	43, 249, 424
EcoNI	CCTNNNNNAGG	1 cut(s)	238
EcoO109I	RGGNCCY	1 cut(s)	102
EcoRI	GAATTC	1 cut(s)	532
EcoT14I	CCWWGG	4 cut(s)	155, 215, 691, 883
EcoT38I	GRGCYC	2 cut(s)	32, 670
ErhI	CCWWGG	4 cut(s)	155, 215, 691, 883
FaqI	GGGAC	3 cut(s)	327, 487, 766
FauNDI	CATATG	2 cut(s)	793, 916
FbaI	TGATCA	1 cut(s)	730
Fnu4HI	GCNGC	1 cut(s)	889
FokI	GGATG	2 cut(s)	509, 958
FriOI	GRGCYC	2 cut(s)	32, 670
Fsp4HI	GCNGC	1 cut(s)	889
FspBI	CTAG	4 cut(s)	156, 216, 597, 705
GluI	GCNGC	1 cut(s)	889
GsuI	CTGGAG	1 cut(s)	392
HaeIII	GGCC	5 cut(s)	103, 127, 550, 651, 970
HapII	CCGG	3 cut(s)	78, 422, 900
HgaI	GACGC	1 cut(s)	905
Hin1I	GRCGYC	1 cut(s)	897
HinfI	GANTC	6 cut(s)	4, 34, 59, 164, 680, 908
HpaII	CCGG	3 cut(s)	78, 422, 900
HphI	GGTGA	3 cut(s)	60, 638, 806
Hpy166II	GTNNAC	1 cut(s)	263
Hpy188I	TCNGA	5 cut(s)	54, 269, 447, 895, 938
Hpy188III	TCNNGA	4 cut(s)	38, 728, 836, 869
Hpy8I	GTNNAC	1 cut(s)	263
Hpy99I	CGWCG	1 cut(s)	982
HpyAV	CCTTC	3 cut(s)	111, 234, 301
HpyCH4III	ACNGT	2 cut(s)	341, 521
HpyCH4V	TGCA	2 cut(s)	228, 433
HpyF10VI	GCNNNNNNNGC	2 cut(s)	159, 439
HpyF3I	CTNAG	5 cut(s)	210, 266, 653, 855, 892
Hsp92I	GRCGYC	1 cut(s)	897
KpnI	GGTACC	1 cut(s)	925
Ksp22I	TGATCA	1 cut(s)	730
Kzo9I	GATC	5 cut(s)	334, 403, 716, 730, 808
Lsp1109I	GCAGC	1 cut(s)	875
LweI	GCATC	3 cut(s)	420, 447, 451
MaeI	CTAG	4 cut(s)	156, 216, 597, 705
MaeIII	GTNAC	2 cut(s)	66, 509
MalI	GATC	5 cut(s)	336, 405, 718, 732, 810
MboI	GATC	5 cut(s)	334, 403, 716, 730, 808
MboII	GAAGA	4 cut(s)	54, 344, 369, 375
MfeI	CAATTG	1 cut(s)	552
MhlI	GDGCHC	4 cut(s)	32, 155, 469, 670
MluCI	AATT	5 cut(s)	487, 532, 552, 757, 831
MlyI	GAGTC	2 cut(s)	53, 158
MmeI	TCCRAC	1 cut(s)	555
MseI	TTAA	3 cut(s)	89, 516, 782
MslI	CAYNNNNRTG	1 cut(s)	825
MspI	CCGG	3 cut(s)	78, 422, 900
MspR9I	CCNGG	1 cut(s)	422
MunI	CAATTG	1 cut(s)	552
Mva1269I	GAATGC	1 cut(s)	598
MwoI	GCNNNNNNNGC	2 cut(s)	159, 439
NciI	CCSGG	1 cut(s)	422
NcoI	CCATGG	1 cut(s)	691
NdeI	CATATG	2 cut(s)	793, 916
NdeII	GATC	5 cut(s)	334, 403, 716, 730, 808
NlaIV	GGNNCC	1 cut(s)	923
NmuCI	GTSAC	1 cut(s)	66
NspI	RCATGY	1 cut(s)	96
PagI	TCATGA	1 cut(s)	835
PcsI	WCGNNNNNNNCGW	1 cut(s)	377
PctI	GAATGC	1 cut(s)	598
PfeI	GAWTC	3 cut(s)	34, 680, 908
PfoI	TCCNGGA	1 cut(s)	420
PkrI	GCNGC	1 cut(s)	890
PleI	GAGTC	2 cut(s)	53, 158
PpsI	GAGTC	2 cut(s)	53, 158
PspN4I	GGNNCC	1 cut(s)	923
PspPI	GGNCC	5 cut(s)	43, 102, 249, 424, 968
RsaI	GTAC	4 cut(s)	221, 245, 262, 923
RsaNI	GTAC	4 cut(s)	220, 244, 261, 922
RseI	CAYNNNNRTG	1 cut(s)	825
SaqAI	TTAA	3 cut(s)	89, 516, 782
SatI	GCNGC	1 cut(s)	889
Sau3AI	GATC	5 cut(s)	334, 403, 716, 730, 808
Sau96I	GGNCC	5 cut(s)	43, 102, 249, 424, 968
SchI	GAGTC	2 cut(s)	53, 158
ScrFI	CCNGG	1 cut(s)	422
SduI	GDGCHC	4 cut(s)	32, 155, 469, 670
SfaNI	GCATC	3 cut(s)	420, 447, 451
SfcI	CTRYAG	3 cut(s)	199, 235, 582
SinI	GGWCC	3 cut(s)	43, 249, 424
SmiMI	CAYNNNNRTG	1 cut(s)	825
SmlI	CTYRAG	5 cut(s)	97, 146, 468, 527, 869
SmoI	CTYRAG	5 cut(s)	97, 146, 468, 527, 869
Sse9I	AATT	5 cut(s)	487, 532, 552, 757, 831
SspMI	CTAG	4 cut(s)	156, 216, 597, 705
StyD4I	CCNGG	1 cut(s)	420
StyI	CCWWGG	4 cut(s)	155, 215, 691, 883
TaaI	ACNGT	2 cut(s)	341, 521
TaqI	TCGA	1 cut(s)	32
TasI	AATT	5 cut(s)	487, 532, 552, 757, 831
TfiI	GAWTC	3 cut(s)	34, 680, 908
Tru1I	TTAA	3 cut(s)	89, 516, 782
Tru9I	TTAA	3 cut(s)	89, 516, 782
TseFI	GTSAC	1 cut(s)	66
TseI	GCWGC	1 cut(s)	888
Tsp45I	GTSAC	1 cut(s)	66
VpaK11BI	GGWCC	3 cut(s)	43, 249, 424
XagI	CCTNNNNNAGG	1 cut(s)	238
XapI	RAATTY	2 cut(s)	532, 831
XceI	RCATGY	1 cut(s)	96
XmaJI	CCTAGG	2 cut(s)	155, 215
XspI	CTAG	4 cut(s)	156, 216, 597, 705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.