Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0014572

Physical Location & Seq

Genomic Coordinates Reverse (-)

27265541 .. 27268028

Gene Structure 2488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1180100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGGTCATAATTCTCTGCAAGTTTGCATGGATTCATCTGACTGGCTACAGGGAACGATTCGCGAGGACTCTCCGATGGACTCGTCCTCGCCGTTATCCGGTGACATGTTAACGTGCTCGAGGCCGTTGGTCGAGCGGAGGCTGAGGCCCCAGCATGAACAAGCCCTCAAGTGCCCTAGGTGCGATTCCACCCACACCAAGTTTTGCTACTACAACAACTACAGCCTCTCCCAACCTAGGTACTTTTGCAAGACCTGCAGAAGGTACTGGACCAAAGGCGGGACGCTCAGAAACATCCCCGTCGGCGGCGGGTGTAGAAAGAACAAGAAAGTTTCTTCCAAGAAACCCAATGATCAGAGCCCTTCATCGTTGATGAACCAACACCACCACCCTGGATCATCTTCGTCGTCGATATCTCACATCCCAACTGATCTCCACCTTTCTTTTCCCGATCAGATGCAGTTCTCACACCTCAATAACTTGATGCTTGGAAGTAATATGAACCCTAGTAGCTTCATGGACAATAGTAACCCTAGACCTATTGATTTCATGGAGAGCAAGTTGGAGGCTATAGTGGGGAATGCCAGGAACTATGATTTCATGGGGGGTGGTGCTGATTTGGGTATGATGGGTGGATATGGAAATAATATGGGTGGAGTTAGTCATGGATTAGAACATCAGTCAAGCTTTCATGGCATTTGCTCATCTCCATTTGGGATGTCATCAATTGATGGGCAGAATGGTAATTTCATGGACAGTTGCCAGAGGTTAATGTTGCCGTATGATCAAGCAAATCATGAGGATCATCATCAAATTAATGCAATGGATGTGAAACCAAACACGAAGCTCTTATCACTTGAGTGGCAAGACCAAGCTGGTTGCTCTGACCTTGGAAAGGACTCATTTGGGTACCTCAATGGCCTAGGATCATGGAGCAATGTGATGAACAGTTATGCCCCCTCCACAACAAATCCATTAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010065 GO:0010067 GO:0010087 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048316 GO:0048507 GO:0048508 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

328

Amino Acids

36.24

Weight (kDa)

6.72

Isoelectric Point (pI)

48.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	54 - 110	5.9e-34	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62940
fragaria_vesca	FvH4_5g05330
malus_domestica	MD06G1173600.v1.1 MD14G1180100.v1.1
prunus_persica	Prupe.5G173100_v2.0.a1
pyrus_communis	pycom06g15480 pycom14g14990
rosa_chinensis	RchiOBHm_Chr7g0193511
rosa_laevigata	RLG00000004265
rosa_multiflora	Rmu_sc0006688.1_g000002
rosa_roxburghii	Rroxscaffold_3G00262040
rosa_rugosa	Rorug07G0009900
rosa_samantha	Rh7AG136800 Rh7BG137100 Rh7CG140400 Rh7DG138200
rosa_wichuraiana	Rw7G011650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	263
Acc65I	GGTACC	1 cut(s)	909
AccB1I	GGYRCC	1 cut(s)	909
AccBSI	CCGCTC	1 cut(s)	136
AccII	CGCG	1 cut(s)	63
AciI	CCGC	4 cut(s)	136, 279, 306, 309
AclWI	GGATC	3 cut(s)	403, 810, 934
AfaI	GTAC	3 cut(s)	242, 266, 911
AfiI	CCNNNNNNNGG	6 cut(s)	98, 237, 261, 279, 305, 895
AflIII	ACRYGT	1 cut(s)	105
AjnI	CCWGG	2 cut(s)	391, 584
AleI	CACNNNNGTG	1 cut(s)	859
AluBI	AGCT	4 cut(s)	513, 687, 847, 875
AluI	AGCT	4 cut(s)	513, 687, 847, 875
Alw21I	GWGCWC	1 cut(s)	119
AlwI	GGATC	3 cut(s)	403, 810, 934
Ama87I	CYCGRG	1 cut(s)	118
AoxI	GGCC	3 cut(s)	122, 146, 919
AseI	ATTAAT	1 cut(s)	816
Asp718I	GGTACC	1 cut(s)	909
AspA2I	CCTAGG	3 cut(s)	176, 236, 922
AspS9I	GGNCC	2 cut(s)	147, 270
AsuHPI	GGTGA	1 cut(s)	113
AvaI	CYCGRG	1 cut(s)	118
AvaII	GGWCC	1 cut(s)	270
AvrII	CCTAGG	3 cut(s)	176, 236, 922
BaeGI	GKGCMC	1 cut(s)	176
BanI	GGYRCC	1 cut(s)	909
BanII	GRGCYC	1 cut(s)	362
Bbv12I	GWGCWC	1 cut(s)	119
BbvCI	CCTCAGC	1 cut(s)	143
BccI	CCATC	3 cut(s)	70, 622, 725
BceAI	ACGGC	3 cut(s)	76, 109, 763
BciT130I	CCWGG	2 cut(s)	393, 586
BclI	TGATCA	2 cut(s)	352, 784
BfaI	CTAG	5 cut(s)	177, 237, 507, 534, 923
BfmI	CTRYAG	4 cut(s)	47, 220, 256, 570
BfuAI	ACCTGC	1 cut(s)	263
BisI	GCNGC	1 cut(s)	307
BlnI	CCTAGG	3 cut(s)	176, 236, 922
BlsI	GCNGC	1 cut(s)	308
Bme1390I	CCNGG	2 cut(s)	393, 586
Bme18I	GGWCC	1 cut(s)	270
BmeT110I	CYCGRG	1 cut(s)	118
BmgT120I	GGNCC	2 cut(s)	147, 270
BmiI	GGNNCC	2 cut(s)	149, 911
BmrFI	CCNGG	2 cut(s)	393, 586
BmsI	GCATC	2 cut(s)	447, 474
Bpu10I	CCTNAGC	1 cut(s)	143
BpuEI	CTTGAG	2 cut(s)	152, 878
BsaBI	GATNNNNATC	1 cut(s)	807
BsaJI	CCNNGG	5 cut(s)	176, 236, 391, 889, 922
BsaWI	WCCGGW	1 cut(s)	98
BsaXI	ACNNNNNCTCC	4 cut(s)	212, 242, 545, 575
Bsc4I	CCNNNNNNNGG	6 cut(s)	98, 237, 261, 279, 305, 895
Bse1I	ACTGG	2 cut(s)	47, 272
Bse3DI	GCAATG	2 cut(s)	828, 943
Bse8I	GATNNNNATC	1 cut(s)	807
BseBI	CCWGG	2 cut(s)	393, 586
BseDI	CCNNGG	5 cut(s)	176, 236, 391, 889, 922
BseGI	GGATG	4 cut(s)	294, 420, 723, 832
BseJI	GATNNNNATC	1 cut(s)	807
BseLI	CCNNNNNNNGG	6 cut(s)	98, 237, 261, 279, 305, 895
BseMI	GCAATG	2 cut(s)	828, 943
BseMII	CTCAG	2 cut(s)	134, 301
BseNI	ACTGG	2 cut(s)	47, 272
BseSI	GKGCMC	1 cut(s)	176
BseYI	CCCAGC	1 cut(s)	150
Bsh1236I	CGCG	1 cut(s)	63
BshFI	GGCC	3 cut(s)	124, 148, 921
BshNI	GGYRCC	1 cut(s)	909
BsiHKAI	GWGCWC	1 cut(s)	119
BsiHKCI	CYCGRG	1 cut(s)	118
BsiSI	CCGG	1 cut(s)	99
BslFI	GGGAC	1 cut(s)	295
BslI	CCNNNNNNNGG	6 cut(s)	98, 237, 261, 279, 305, 895
BsmFI	GGGAC	1 cut(s)	295
BsmI	GAATGC	1 cut(s)	586
BsnI	GGCC	3 cut(s)	124, 148, 921
BsoBI	CYCGRG	1 cut(s)	118
Bsp1286I	GDGCHC	3 cut(s)	119, 176, 362
Bsp143I	GATC	7 cut(s)	352, 395, 430, 451, 784, 802, 926
Bsp68I	TCGCGA	1 cut(s)	63
BspACI	CCGC	4 cut(s)	136, 279, 306, 309
BspANI	GGCC	3 cut(s)	124, 148, 921
BspCNI	CTCAG	2 cut(s)	135, 300
BspFNI	CGCG	1 cut(s)	63
BspHI	TCATGA	1 cut(s)	796
BspLI	GGNNCC	2 cut(s)	149, 911
BspMAI	CTGCAG	1 cut(s)	260
BspMI	ACCTGC	1 cut(s)	263
BspPI	GGATC	3 cut(s)	403, 810, 934
BspT107I	GGYRCC	1 cut(s)	909
BsrBI	CCGCTC	1 cut(s)	136
BsrDI	GCAATG	2 cut(s)	828, 943
BsrI	ACTGG	2 cut(s)	47, 272
BssECI	CCNNGG	5 cut(s)	176, 236, 391, 889, 922
BssMI	GATC	7 cut(s)	352, 395, 430, 451, 784, 802, 926
BssT1I	CCWWGG	4 cut(s)	176, 236, 889, 922
Bst2UI	CCWGG	2 cut(s)	393, 586
Bst4CI	ACNGT	2 cut(s)	758, 950
BstAPI	GCANNNNNTGC	1 cut(s)	255
BstDEI	CTNAG	2 cut(s)	143, 287
BstENI	CCTNNNNNAGG	2 cut(s)	259, 893
BstF5I	GGATG	4 cut(s)	294, 420, 723, 832
BstFNI	CGCG	1 cut(s)	63
BstKTI	GATC	7 cut(s)	355, 398, 433, 454, 787, 805, 929
BstMBI	GATC	7 cut(s)	352, 395, 430, 451, 784, 802, 926
BstMWI	GCNNNNNNNGC	3 cut(s)	180, 255, 693
BstNI	CCWGG	2 cut(s)	393, 586
BstNSI	RCATGY	1 cut(s)	109
BstSCI	CCNGG	2 cut(s)	391, 584
BstSFI	CTRYAG	4 cut(s)	47, 220, 256, 570
BstSLI	GKGCMC	1 cut(s)	176
BstUI	CGCG	1 cut(s)	63
BstXI	CCANNNNNNTGG	1 cut(s)	392
BsuRI	GGCC	3 cut(s)	124, 148, 921
BtsCI	GGATG	4 cut(s)	294, 420, 723, 832
BtuMI	TCGCGA	1 cut(s)	63
BveI	ACCTGC	1 cut(s)	263
CciI	TCATGA	1 cut(s)	796
Cfr13I	GGNCC	2 cut(s)	147, 270
CseI	GACGC	1 cut(s)	292
Csp6I	GTAC	3 cut(s)	241, 265, 910
CviQI	GTAC	3 cut(s)	241, 265, 910
DdeI	CTNAG	2 cut(s)	143, 287
DpnI	GATC	7 cut(s)	354, 397, 432, 453, 786, 804, 928
DpnII	GATC	7 cut(s)	352, 395, 430, 451, 784, 802, 926
Eco130I	CCWWGG	4 cut(s)	176, 236, 889, 922
Eco24I	GRGCYC	1 cut(s)	362
Eco32I	GATATC	1 cut(s)	414
Eco47I	GGWCC	1 cut(s)	270
Eco88I	CYCGRG	1 cut(s)	118
EcoNI	CCTNNNNNAGG	2 cut(s)	259, 893
EcoO109I	RGGNCCY	1 cut(s)	147
EcoRII	CCWGG	2 cut(s)	391, 584
EcoRV	GATATC	1 cut(s)	414
EcoT14I	CCWWGG	4 cut(s)	176, 236, 889, 922
EcoT38I	GRGCYC	1 cut(s)	362
ErhI	CCWWGG	4 cut(s)	176, 236, 889, 922
FaqI	GGGAC	1 cut(s)	295
FauI	CCCGC	2 cut(s)	272, 302
FbaI	TGATCA	2 cut(s)	352, 784
Fnu4HI	GCNGC	1 cut(s)	307
FokI	GGATG	4 cut(s)	281, 407, 730, 839
FriOI	GRGCYC	1 cut(s)	362
Fsp4HI	GCNGC	1 cut(s)	307
FspBI	CTAG	5 cut(s)	177, 237, 507, 534, 923
GluI	GCNGC	1 cut(s)	307
GsaI	CCCAGC	1 cut(s)	154
HaeIII	GGCC	3 cut(s)	124, 148, 921
HapII	CCGG	1 cut(s)	99
HgaI	GACGC	1 cut(s)	292
HincII	GTYRAC	1 cut(s)	111
HindII	GTYRAC	1 cut(s)	111
HindIII	AAGCTT	1 cut(s)	685
HinfI	GANTC	6 cut(s)	32, 58, 68, 80, 185, 899
HpaI	GTTAAC	1 cut(s)	111
HpaII	CCGG	1 cut(s)	99
HphI	GGTGA	1 cut(s)	113
Hpy166II	GTNNAC	1 cut(s)	111
Hpy188I	TCNGA	6 cut(s)	40, 75, 290, 357, 456, 886
Hpy188III	TCNNGA	3 cut(s)	62, 449, 797
Hpy8I	GTNNAC	1 cut(s)	111
Hpy99I	CGWCG	3 cut(s)	305, 409, 412
HpyAV	CCTTC	2 cut(s)	255, 372
HpyCH4III	ACNGT	2 cut(s)	758, 950
HpyCH4IV	ACGT	1 cut(s)	113
HpyCH4V	TGCA	6 cut(s)	19, 27, 249, 258, 460, 821
HpyF10VI	GCNNNNNNNGC	3 cut(s)	180, 255, 693
HpyF3I	CTNAG	2 cut(s)	143, 287
HpySE526I	ACGT	1 cut(s)	113
KpnI	GGTACC	1 cut(s)	913
Ksp22I	TGATCA	2 cut(s)	352, 784
KspAI	GTTAAC	1 cut(s)	111
Kzo9I	GATC	7 cut(s)	352, 395, 430, 451, 784, 802, 926
LmnI	GCTCC	1 cut(s)	933
LweI	GCATC	2 cut(s)	447, 474
MaeI	CTAG	5 cut(s)	177, 237, 507, 534, 923
MaeII	ACGT	1 cut(s)	113
MaeIII	GTNAC	2 cut(s)	101, 527
MalI	GATC	7 cut(s)	354, 397, 432, 453, 786, 804, 928
MbiI	CCGCTC	1 cut(s)	136
MboI	GATC	7 cut(s)	352, 395, 430, 451, 784, 802, 926
MboII	GAAGA	2 cut(s)	327, 393
MfeI	CAATTG	1 cut(s)	726
MhlI	GDGCHC	3 cut(s)	119, 176, 362
MluCI	AATT	4 cut(s)	10, 726, 745, 813
MlyI	GAGTC	3 cut(s)	62, 74, 893
MmeI	TCCRAC	1 cut(s)	543
MseI	TTAA	3 cut(s)	110, 770, 816
MslI	CAYNNNNRTG	1 cut(s)	859
MspI	CCGG	1 cut(s)	99
MspR9I	CCNGG	2 cut(s)	393, 586
MunI	CAATTG	1 cut(s)	726
Mva1269I	GAATGC	1 cut(s)	586
MvaI	CCWGG	2 cut(s)	393, 586
MvnI	CGCG	1 cut(s)	63
MwoI	GCNNNNNNNGC	3 cut(s)	180, 255, 693
NdeII	GATC	7 cut(s)	352, 395, 430, 451, 784, 802, 926
NlaIV	GGNNCC	2 cut(s)	149, 911
NmuCI	GTSAC	1 cut(s)	101
NruI	TCGCGA	1 cut(s)	63
NspI	RCATGY	1 cut(s)	109
OliI	CACNNNNGTG	1 cut(s)	859
PaeR7I	CTCGAG	1 cut(s)	118
PagI	TCATGA	1 cut(s)	796
PciI	ACATGT	1 cut(s)	105
PcsI	WCGNNNNNNNCGW	1 cut(s)	89
PctI	GAATGC	1 cut(s)	586
PfeI	GAWTC	3 cut(s)	32, 58, 185
PkrI	GCNGC	1 cut(s)	308
PleI	GAGTC	3 cut(s)	62, 74, 893
PpsI	GAGTC	3 cut(s)	62, 74, 893
PscI	ACATGT	1 cut(s)	105
PshBI	ATTAAT	1 cut(s)	816
Psp6I	CCWGG	2 cut(s)	391, 584
PspFI	CCCAGC	1 cut(s)	150
PspGI	CCWGG	2 cut(s)	391, 584
PspN4I	GGNNCC	2 cut(s)	149, 911
PspPI	GGNCC	2 cut(s)	147, 270
PspXI	VCTCGAGB	1 cut(s)	118
PstI	CTGCAG	1 cut(s)	260
RruI	TCGCGA	1 cut(s)	63
RsaI	GTAC	3 cut(s)	242, 266, 911
RsaNI	GTAC	3 cut(s)	241, 265, 910
RseI	CAYNNNNRTG	1 cut(s)	859
SaqAI	TTAA	3 cut(s)	110, 770, 816
SatI	GCNGC	1 cut(s)	307
Sau3AI	GATC	7 cut(s)	352, 395, 430, 451, 784, 802, 926
Sau96I	GGNCC	2 cut(s)	147, 270
SchI	GAGTC	3 cut(s)	62, 74, 893
ScrFI	CCNGG	2 cut(s)	393, 586
SduI	GDGCHC	3 cut(s)	119, 176, 362
SfaNI	GCATC	2 cut(s)	447, 474
SfcI	CTRYAG	4 cut(s)	47, 220, 256, 570
Sfr274I	CTCGAG	1 cut(s)	118
SinI	GGWCC	1 cut(s)	270
SlaI	CTCGAG	1 cut(s)	118
SmiMI	CAYNNNNRTG	1 cut(s)	859
SmlI	CTYRAG	3 cut(s)	118, 167, 857
SmoI	CTYRAG	3 cut(s)	118, 167, 857
Sse9I	AATT	4 cut(s)	10, 726, 745, 813
SsiI	CCGC	4 cut(s)	136, 279, 306, 309
SspMI	CTAG	5 cut(s)	177, 237, 507, 534, 923
StyD4I	CCNGG	2 cut(s)	391, 584
StyI	CCWWGG	4 cut(s)	176, 236, 889, 922
TaaI	ACNGT	2 cut(s)	758, 950
TaiI	ACGT	1 cut(s)	116
TaqI	TCGA	3 cut(s)	119, 132, 410
TasI	AATT	4 cut(s)	10, 726, 745, 813
TauI	GCSGC	1 cut(s)	309
TfiI	GAWTC	3 cut(s)	32, 58, 185
Tru1I	TTAA	3 cut(s)	110, 770, 816
Tru9I	TTAA	3 cut(s)	110, 770, 816
TseFI	GTSAC	1 cut(s)	101
Tsp45I	GTSAC	1 cut(s)	101
VpaK11BI	GGWCC	1 cut(s)	270
VspI	ATTAAT	1 cut(s)	816
XagI	CCTNNNNNAGG	2 cut(s)	259, 893
XceI	RCATGY	1 cut(s)	109
XhoI	CTCGAG	1 cut(s)	118
XmaJI	CCTAGG	3 cut(s)	176, 236, 922
XspI	CTAG	5 cut(s)	177, 237, 507, 534, 923

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.