Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0014572

Physical Location & Seq

Genomic Coordinates Forward (+)

3119708 .. 3122197

Gene Structure 2490 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g05330.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGGTCATAATTCTCTTCAAGTTTGCATGGATTCATCTGACTGGCTTCAGGGCTCGATTCACGAGGACCAGTCTCCGATGGAATCCTCGTCACCACTCTCCGGCGACATCTTAACATGCTCAAGGCCCTTGATAGAGAGAAGGCTGAGGCCACCGCATGACCAATCCCTCAAGTGTCCTAGGTGCGACTCCACCCACACCAAGTTCTGTTACTACAATAATTACAGCCTCTCTCAGCCTAGGTACTTTTGCAAGACCTGTAGAAGGTACTGGACCAAAGGAGGTACACTCAGGAACATTCCAGTTGGCGGTGGTTGTAGGAAGAACAAGAAGGTTGCTTCGAAGAAACAAAATGAAGACCACAGTCCCTCGATGAACCCTAACCATCTCGGTTCGTCATCTACGTCTTCTCATCACAACCGTACTGATCTCCAGCTCTCGTTCCCGGACCAGATGCAGTTTTCACATCTGAATAACTTGATGCTTGGGGCTCAAGGGACAGGAAACCCTAGTTTCATGGATGGCAGGTACGGGAACATTAACGGTATGCTTGAGAATTCCAACCAGTTGAGGCCAATTGATTTCATGGAGAGTAAGTTGGAAGCTATAGTGGGAAATGCTAGGAACTATGATTTCATGGGTGGTGGTGGTGATAGTCTGGGTATAGTAGGTGGCCTTAGCAATATGGGGGGTGGTGCTCATGGATTAGAATCTGCTGGCTTCCATGGTTTTTGCTCTAGTCCATTTGGATCGATGTCTCTTGATCATCAAGGGAATAACAATGGGAATAATTTCATGGAGAATTGCCAGAGGTTAATGTTGCCATATGAAGCAAATGAGAATCATCAGCATCATCAAAATGAAATCCATGATGTGAAGCCTAACACTAAGCTCTTGTCTCTTGAGTGGCAAGAACAAGGCTGCTCCGACGCCGGAAAAGAATCATCATATGGTTACCTCAATGCTCTTGGATCATGGACAGGCGTGATGAACAACTTCGGGCCGTCGGCGACGAACTCATTAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010065 GO:0010067 GO:0010087 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048316 GO:0048507 GO:0048508 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

343

Amino Acids

37.71

Weight (kDa)

6.59

Isoelectric Point (pI)

45.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	54 - 111	6.7e-34	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62940
fragaria_vesca	FvH4_5g05330
malus_domestica	MD06G1173600.v1.1 MD14G1180100.v1.1
prunus_persica	Prupe.5G173100_v2.0.a1
pyrus_communis	pycom06g15480 pycom14g14990
rosa_chinensis	RchiOBHm_Chr7g0193511
rosa_laevigata	RLG00000004265
rosa_multiflora	Rmu_sc0006688.1_g000002
rosa_roxburghii	Rroxscaffold_3G00262040
rosa_rugosa	Rorug07G0009900
rosa_samantha	Rh7AG136800 Rh7BG137100 Rh7CG140400 Rh7DG138200
rosa_wichuraiana	Rw7G011650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	516
AciI	CCGC	2 cut(s)	155, 309
AclWI	GGATC	2 cut(s)	757, 979
AcsI	RAATTY	1 cut(s)	556
AcuI	CTGAAG	1 cut(s)	32
AcyI	GRCGYC	1 cut(s)	930
AfaI	GTAC	5 cut(s)	245, 269, 286, 424, 530
AfiI	CCNNNNNNNGG	3 cut(s)	101, 264, 308
AgsI	TTSAA	1 cut(s)	20
AluBI	AGCT	3 cut(s)	436, 605, 892
AluI	AGCT	3 cut(s)	436, 605, 892
Alw21I	GWGCWC	1 cut(s)	700
Alw26I	GTCTC	3 cut(s)	78, 762, 903
AlwI	GGATC	2 cut(s)	757, 979
AoxI	GGCC	5 cut(s)	125, 149, 572, 673, 1001
ApeKI	GCWGC	1 cut(s)	921
ApoI	RAATTY	1 cut(s)	556
Asp700I	GAANNNNTTC	2 cut(s)	791, 995
AspA2I	CCTAGG	2 cut(s)	179, 239
AspS9I	GGNCC	5 cut(s)	67, 126, 273, 448, 1001
AsuC2I	CCSGG	1 cut(s)	446
AsuHPI	GGTGA	2 cut(s)	84, 662
AsuII	TTCGAA	1 cut(s)	341
AvaII	GGWCC	3 cut(s)	67, 273, 448
AvrII	CCTAGG	2 cut(s)	179, 239
BanII	GRGCYC	2 cut(s)	56, 493
BauI	CACGAG	1 cut(s)	62
BbsI	GAAGAC	2 cut(s)	363, 399
Bbv12I	GWGCWC	1 cut(s)	700
BbvCI	CCTCAGC	1 cut(s)	146
BbvI	GCAGC	1 cut(s)	908
BccI	CCATC	3 cut(s)	73, 393, 515
BceAI	ACGGC	1 cut(s)	988
BclI	TGATCA	1 cut(s)	763
BcnI	CCSGG	1 cut(s)	446
BcoDI	GTCTC	3 cut(s)	78, 762, 903
BfaI	CTAG	5 cut(s)	180, 240, 510, 621, 738
BfmI	CTRYAG	2 cut(s)	259, 606
BfuAI	ACCTGC	1 cut(s)	516
BisI	GCNGC	1 cut(s)	922
BlnI	CCTAGG	2 cut(s)	179, 239
BlsI	GCNGC	1 cut(s)	923
Bme1390I	CCNGG	1 cut(s)	446
Bme18I	GGWCC	3 cut(s)	67, 273, 448
BmgT120I	GGNCC	5 cut(s)	67, 126, 273, 448, 1001
BmrFI	CCNGG	1 cut(s)	446
BmsI	GCATC	3 cut(s)	444, 471, 859
BoxI	GACNNNNGTC	1 cut(s)	363
BpiI	GAAGAC	2 cut(s)	363, 399
BplI	GAGNNNNNCTC	2 cut(s)	273, 305
BpmI	CTGGAG	1 cut(s)	416
Bpu10I	CCTNAGC	2 cut(s)	146, 677
Bpu14I	TTCGAA	1 cut(s)	341
BpuEI	CTTGAG	5 cut(s)	106, 155, 477, 572, 923
BpuMI	CCSGG	1 cut(s)	446
Bsa29I	ATCGAT	1 cut(s)	752
BsaBI	GATNNNNATC	1 cut(s)	709
BsaHI	GRCGYC	1 cut(s)	930
BsaJI	CCNNGG	3 cut(s)	179, 239, 724
BsaXI	ACNNNNNCTCC	2 cut(s)	581, 611
Bsc4I	CCNNNNNNNGG	3 cut(s)	101, 264, 308
Bse1I	ACTGG	5 cut(s)	47, 70, 275, 302, 565
Bse8I	GATNNNNATC	1 cut(s)	709
BseCI	ATCGAT	1 cut(s)	752
BseDI	CCNNGG	3 cut(s)	179, 239, 724
BseGI	GGATG	1 cut(s)	526
BseJI	GATNNNNATC	1 cut(s)	709
BseLI	CCNNNNNNNGG	3 cut(s)	101, 264, 308
BseMII	CTCAG	3 cut(s)	137, 248, 304
BseNI	ACTGG	5 cut(s)	47, 70, 275, 302, 565
BseXI	GCAGC	1 cut(s)	908
BshFI	GGCC	5 cut(s)	127, 151, 574, 675, 1003
BshVI	ATCGAT	1 cut(s)	752
BsiHKAI	GWGCWC	1 cut(s)	700
BsiSI	CCGG	3 cut(s)	102, 446, 933
BslFI	GGGAC	2 cut(s)	351, 511
BslI	CCNNNNNNNGG	3 cut(s)	101, 264, 308
BsmAI	GTCTC	3 cut(s)	78, 762, 903
BsmFI	GGGAC	2 cut(s)	351, 511
BsnI	GGCC	5 cut(s)	127, 151, 574, 675, 1003
Bsp119I	TTCGAA	1 cut(s)	341
Bsp1286I	GDGCHC	3 cut(s)	56, 493, 700
Bsp143I	GATC	4 cut(s)	427, 749, 763, 971
Bsp19I	CCATGG	1 cut(s)	724
BspACI	CCGC	2 cut(s)	155, 309
BspANI	GGCC	5 cut(s)	127, 151, 574, 675, 1003
BspCNI	CTCAG	3 cut(s)	138, 247, 303
BspDI	ATCGAT	1 cut(s)	752
BspMI	ACCTGC	1 cut(s)	516
BspPI	GGATC	2 cut(s)	757, 979
BspT104I	TTCGAA	1 cut(s)	341
BsrI	ACTGG	5 cut(s)	47, 70, 275, 302, 565
BssECI	CCNNGG	3 cut(s)	179, 239, 724
BssMI	GATC	4 cut(s)	427, 749, 763, 971
BssNI	GRCGYC	1 cut(s)	930
BssSI	CACGAG	1 cut(s)	62
BssT1I	CCWWGG	3 cut(s)	179, 239, 724
Bst2BI	CACGAG	1 cut(s)	62
Bst4CI	ACNGT	3 cut(s)	365, 422, 545
Bst6I	CTCTTC	1 cut(s)	21
BstACI	GRCGYC	1 cut(s)	930
BstBI	TTCGAA	1 cut(s)	341
BstC8I	GCNNGC	1 cut(s)	718
BstDEI	CTNAG	5 cut(s)	146, 234, 290, 677, 888
BstDSI	CCRYGG	1 cut(s)	724
BstEII	GGTNACC	1 cut(s)	953
BstENI	CCTNNNNNAGG	1 cut(s)	262
BstF5I	GGATG	1 cut(s)	526
BstKTI	GATC	4 cut(s)	430, 752, 766, 974
BstMAI	GTCTC	3 cut(s)	78, 762, 903
BstMBI	GATC	4 cut(s)	427, 749, 763, 971
BstNSI	RCATGY	1 cut(s)	120
BstPAI	GACNNNNGTC	1 cut(s)	363
BstPI	GGTNACC	1 cut(s)	953
BstSCI	CCNGG	1 cut(s)	444
BstSFI	CTRYAG	2 cut(s)	259, 606
BstV1I	GCAGC	1 cut(s)	908
BstV2I	GAAGAC	2 cut(s)	363, 399
Bsu15I	ATCGAT	1 cut(s)	752
BsuRI	GGCC	5 cut(s)	127, 151, 574, 675, 1003
BsuTUI	ATCGAT	1 cut(s)	752
BtgI	CCRYGG	1 cut(s)	724
BtsCI	GGATG	1 cut(s)	526
BveI	ACCTGC	1 cut(s)	516
Cac8I	GCNNGC	1 cut(s)	718
Cfr13I	GGNCC	5 cut(s)	67, 126, 273, 448, 1001
ClaI	ATCGAT	1 cut(s)	752
CseI	GACGC	1 cut(s)	938
Csp6I	GTAC	5 cut(s)	244, 268, 285, 423, 529
CviQI	GTAC	5 cut(s)	244, 268, 285, 423, 529
DdeI	CTNAG	5 cut(s)	146, 234, 290, 677, 888
DpnI	GATC	4 cut(s)	429, 751, 765, 973
DpnII	GATC	4 cut(s)	427, 749, 763, 971
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
Eco130I	CCWWGG	3 cut(s)	179, 239, 724
Eco24I	GRGCYC	2 cut(s)	56, 493
Eco47I	GGWCC	3 cut(s)	67, 273, 448
Eco57I	CTGAAG	1 cut(s)	32
Eco91I	GGTNACC	1 cut(s)	953
EcoNI	CCTNNNNNAGG	1 cut(s)	262
EcoO109I	RGGNCCY	1 cut(s)	126
EcoO65I	GGTNACC	1 cut(s)	953
EcoRI	GAATTC	1 cut(s)	556
EcoT14I	CCWWGG	3 cut(s)	179, 239, 724
EcoT38I	GRGCYC	2 cut(s)	56, 493
ErhI	CCWWGG	3 cut(s)	179, 239, 724
FaqI	GGGAC	2 cut(s)	351, 511
FauNDI	CATATG	2 cut(s)	826, 949
FbaI	TGATCA	1 cut(s)	763
Fnu4HI	GCNGC	1 cut(s)	922
FokI	GGATG	1 cut(s)	533
FriOI	GRGCYC	2 cut(s)	56, 493
Fsp4HI	GCNGC	1 cut(s)	922
FspBI	CTAG	5 cut(s)	180, 240, 510, 621, 738
GluI	GCNGC	1 cut(s)	922
GsuI	CTGGAG	1 cut(s)	416
HaeIII	GGCC	5 cut(s)	127, 151, 574, 675, 1003
HapII	CCGG	3 cut(s)	102, 446, 933
HgaI	GACGC	1 cut(s)	938
Hin1I	GRCGYC	1 cut(s)	930
HinfI	GANTC	7 cut(s)	32, 58, 83, 188, 710, 841, 941
HpaII	CCGG	3 cut(s)	102, 446, 933
HphI	GGTGA	2 cut(s)	84, 662
Hpy166II	GTNNAC	1 cut(s)	287
Hpy188I	TCNGA	4 cut(s)	40, 78, 471, 928
Hpy188III	TCNNGA	4 cut(s)	62, 292, 761, 902
Hpy8I	GTNNAC	1 cut(s)	287
Hpy99I	CGWCG	3 cut(s)	932, 1009, 1015
HpyAV	CCTTC	3 cut(s)	135, 258, 325
HpyCH4III	ACNGT	3 cut(s)	365, 422, 545
HpyCH4IV	ACGT	1 cut(s)	404
HpyCH4V	TGCA	3 cut(s)	27, 252, 457
HpyF3I	CTNAG	5 cut(s)	146, 234, 290, 677, 888
HpySE526I	ACGT	1 cut(s)	404
Hsp92I	GRCGYC	1 cut(s)	930
Ksp22I	TGATCA	1 cut(s)	763
Kzo9I	GATC	4 cut(s)	427, 749, 763, 971
LmnI	GCTCC	1 cut(s)	929
Lsp1109I	GCAGC	1 cut(s)	908
LweI	GCATC	3 cut(s)	444, 471, 859
MaeI	CTAG	5 cut(s)	180, 240, 510, 621, 738
MaeII	ACGT	1 cut(s)	404
MaeIII	GTNAC	3 cut(s)	90, 209, 953
MalI	GATC	4 cut(s)	429, 751, 765, 973
MboI	GATC	4 cut(s)	427, 749, 763, 971
MboII	GAAGA	5 cut(s)	8, 334, 355, 368, 399
MfeI	CAATTG	1 cut(s)	576
MhlI	GDGCHC	3 cut(s)	56, 493, 700
MluCI	AATT	6 cut(s)	10, 220, 556, 576, 790, 802
MlyI	GAGTC	1 cut(s)	182
MmeI	TCCRAC	3 cut(s)	579, 585, 951
MroXI	GAANNNNTTC	2 cut(s)	791, 995
MseI	TTAA	3 cut(s)	113, 540, 815
MslI	CAYNNNNRTG	1 cut(s)	858
MspI	CCGG	3 cut(s)	102, 446, 933
MspR9I	CCNGG	1 cut(s)	446
MunI	CAATTG	1 cut(s)	576
NciI	CCSGG	1 cut(s)	446
NcoI	CCATGG	1 cut(s)	724
NdeI	CATATG	2 cut(s)	826, 949
NdeII	GATC	4 cut(s)	427, 749, 763, 971
NmuCI	GTSAC	1 cut(s)	90
NspI	RCATGY	1 cut(s)	120
NspV	TTCGAA	1 cut(s)	341
PcsI	WCGNNNNNNNCGW	1 cut(s)	401
PdmI	GAANNNNTTC	2 cut(s)	791, 995
PfeI	GAWTC	6 cut(s)	32, 58, 83, 710, 841, 941
PfoI	TCCNGGA	1 cut(s)	444
PkrI	GCNGC	1 cut(s)	923
PleI	GAGTC	1 cut(s)	182
PpsI	GAGTC	1 cut(s)	182
PshAI	GACNNNNGTC	1 cut(s)	363
PspEI	GGTNACC	1 cut(s)	953
PspPI	GGNCC	5 cut(s)	67, 126, 273, 448, 1001
RsaI	GTAC	5 cut(s)	245, 269, 286, 424, 530
RsaNI	GTAC	5 cut(s)	244, 268, 285, 423, 529
RseI	CAYNNNNRTG	1 cut(s)	858
SaqAI	TTAA	3 cut(s)	113, 540, 815
SatI	GCNGC	1 cut(s)	922
Sau3AI	GATC	4 cut(s)	427, 749, 763, 971
Sau96I	GGNCC	5 cut(s)	67, 126, 273, 448, 1001
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	1 cut(s)	446
SduI	GDGCHC	3 cut(s)	56, 493, 700
SfaNI	GCATC	3 cut(s)	444, 471, 859
SfcI	CTRYAG	2 cut(s)	259, 606
SfuI	TTCGAA	1 cut(s)	341
SinI	GGWCC	3 cut(s)	67, 273, 448
SmiMI	CAYNNNNRTG	1 cut(s)	858
SmlI	CTYRAG	5 cut(s)	121, 170, 492, 551, 902
SmoI	CTYRAG	5 cut(s)	121, 170, 492, 551, 902
Sse9I	AATT	6 cut(s)	10, 220, 556, 576, 790, 802
SsiI	CCGC	2 cut(s)	155, 309
SspMI	CTAG	5 cut(s)	180, 240, 510, 621, 738
StyD4I	CCNGG	1 cut(s)	444
StyI	CCWWGG	3 cut(s)	179, 239, 724
TaaI	ACNGT	3 cut(s)	365, 422, 545
TaiI	ACGT	1 cut(s)	407
TaqI	TCGA	4 cut(s)	56, 341, 371, 752
TasI	AATT	6 cut(s)	10, 220, 556, 576, 790, 802
TfiI	GAWTC	6 cut(s)	32, 58, 83, 710, 841, 941
Tru1I	TTAA	3 cut(s)	113, 540, 815
Tru9I	TTAA	3 cut(s)	113, 540, 815
TseFI	GTSAC	1 cut(s)	90
TseI	GCWGC	1 cut(s)	921
Tsp45I	GTSAC	1 cut(s)	90
VpaK11BI	GGWCC	3 cut(s)	67, 273, 448
XagI	CCTNNNNNAGG	1 cut(s)	262
XapI	RAATTY	1 cut(s)	556
XceI	RCATGY	1 cut(s)	120
XmaJI	CCTAGG	2 cut(s)	179, 239
XmnI	GAANNNNTTC	2 cut(s)	791, 995
XspI	CTAG	5 cut(s)	180, 240, 510, 621, 738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.