Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0014572

Physical Location & Seq

Genomic Coordinates Reverse (-)

14742368 .. 14744693

Gene Structure 2326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G173100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGGCCATAACTCTCTGCAAGTTTGCATGGATTCATCTGACTGGTTACAGGGAACGATGCACGAGGACTCTCCCATGGACTCTTCCTCACCATTATCTGGGGACATGTTAACCTGCTCACGGCCCTTGATAGAGAGAAGGCTGAGGCCCCAGCATGACCAAGCCCTCAAGTGCCCTAGATGTGACTCTACCCACACCAAGTTCTGCTACTACAACAACTACAGCCTCTCTCAGCCTAGGTACTTTTGCAAGACCTGCAGAAGGTACTGGACCAAAGGAGGCACCCTCAGGAACATTCCTGTGGGTGGTGGCTGCAGAAAGAACAAGAAAGTTGCTTCCAAGAAACCCAATGAGCCTCATAATCCATTGATGAACCAGAATGCTGGCTCATCATCCTCATCAGTTTCTCACAACCCAACTGATCTCCACCTTTCATTTCCTGATCAGATGCAATTTTCACACCTCAATGGCTTGATGCTTGGGAGTAATAATAACCCTAGTTTCATGGACAGCAGGTACAATGGTATGCTTGAGAGTAATAACAACAACAACCCAAGGCCTATTGATTTCATGGAGAGCAAATTGGAAGCCATAGTTGGGAATGCTAGGAATTATGACTTTATGGGGAATGGTGCTGATTTGGGAATGATGGGTGGGCTTGCAAATAATATGGGTGGTGAGTCAAGTTTTCATCATGGCCTTTGCTCTCCATTTGGGATGTCATCATTTGATGGGCAGAACGGTAATTTCATGGACACTTGCCAGAGGTTGATGTTACCATATGATCACCAAGCAAGTCATGATCAGGATCATCACCAAAATGGAATGGATGTGAAGCCAAACACTAAGCTCTTGTCCCTTGAGTGGCAAGACCAAGGCTGCTCTGACCATGGAAAGGAGTCATTTGGGTACCTCAATGGTCTAGGATCATGGACCAATGTCATGAACAATTATGGCCCCTCCACCACAAACCCATTAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010065 GO:0010067 GO:0010087 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048316 GO:0048507 GO:0048508 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

328

Amino Acids

36.44

Weight (kDa)

6.55

Isoelectric Point (pI)

41.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62940
fragaria_vesca	FvH4_5g05330
malus_domestica	MD06G1173600.v1.1 MD14G1180100.v1.1
prunus_persica	Prupe.5G173100_v2.0.a1
pyrus_communis	pycom06g15480 pycom14g14990
rosa_chinensis	RchiOBHm_Chr7g0193511
rosa_laevigata	RLG00000004265
rosa_multiflora	Rmu_sc0006688.1_g000002
rosa_roxburghii	Rroxscaffold_3G00262040
rosa_rugosa	Rorug07G0009900
rosa_samantha	Rh7AG136800 Rh7BG137100 Rh7CG140400 Rh7DG138200
rosa_wichuraiana	Rw7G011650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	122, 263, 504
Acc65I	GGTACC	1 cut(s)	909
AccB1I	GGYRCC	2 cut(s)	281, 909
AccB7I	CCANNNNNTGG	1 cut(s)	98
AclWI	GGATC	2 cut(s)	816, 934
AfaI	GTAC	4 cut(s)	242, 266, 518, 911
AfiI	CCNNNNNNNGG	7 cut(s)	98, 120, 261, 305, 597, 864, 895
AflIII	ACRYGT	1 cut(s)	105
AjuI	GAANNNNNNNTTGG	2 cut(s)	579, 611
AluBI	AGCT	1 cut(s)	850
AluI	AGCT	1 cut(s)	850
AlwI	GGATC	2 cut(s)	816, 934
AoxI	GGCC	6 cut(s)	4, 122, 146, 557, 697, 955
ApeKI	GCWGC	2 cut(s)	312, 879
Asp718I	GGTACC	1 cut(s)	909
AspA2I	CCTAGG	1 cut(s)	236
AspS9I	GGNCC	6 cut(s)	4, 123, 147, 270, 933, 956
AsuHPI	GGTGA	4 cut(s)	81, 689, 779, 806
AvaII	GGWCC	2 cut(s)	270, 933
AvrII	CCTAGG	1 cut(s)	236
AxyI	CCTNAGG	1 cut(s)	287
BaeGI	GKGCMC	1 cut(s)	176
BaeI	ACNNNNGTAYC	2 cut(s)	508, 541
BanI	GGYRCC	2 cut(s)	281, 909
BauI	CACGAG	1 cut(s)	62
BbvCI	CCTCAGC	1 cut(s)	143
BbvI	GCAGC	2 cut(s)	299, 866
BccI	CCATC	2 cut(s)	643, 725
BceAI	ACGGC	1 cut(s)	137
BclI	TGATCA	3 cut(s)	442, 784, 802
BfaI	CTAG	5 cut(s)	177, 237, 498, 606, 923
BfmI	CTRYAG	3 cut(s)	220, 256, 313
BfuAI	ACCTGC	3 cut(s)	122, 263, 504
BisI	GCNGC	2 cut(s)	313, 880
BlnI	CCTAGG	1 cut(s)	236
BlsI	GCNGC	2 cut(s)	314, 881
Bme18I	GGWCC	2 cut(s)	270, 933
BmgT120I	GGNCC	6 cut(s)	4, 123, 147, 270, 933, 956
BmiI	GGNNCC	4 cut(s)	149, 283, 911, 958
BmsI	GCATC	3 cut(s)	48, 438, 465
BoxI	GACNNNNGTC	1 cut(s)	938
BplI	GAGNNNNNCTC	2 cut(s)	270, 302
Bpu10I	CCTNAGC	1 cut(s)	143
BpuEI	CTTGAG	3 cut(s)	152, 551, 881
BsaBI	GATNNNNATC	1 cut(s)	807
BsaJI	CCNNGG	5 cut(s)	75, 236, 554, 874, 889
Bsc4I	CCNNNNNNNGG	7 cut(s)	98, 120, 261, 305, 597, 864, 895
Bse1I	ACTGG	2 cut(s)	47, 272
Bse21I	CCTNAGG	1 cut(s)	287
Bse8I	GATNNNNATC	1 cut(s)	807
BseDI	CCNNGG	5 cut(s)	75, 236, 554, 874, 889
BseGI	GGATG	3 cut(s)	392, 723, 835
BseJI	GATNNNNATC	1 cut(s)	807
BseLI	CCNNNNNNNGG	7 cut(s)	98, 120, 261, 305, 597, 864, 895
BseMII	CTCAG	3 cut(s)	134, 245, 301
BseNI	ACTGG	2 cut(s)	47, 272
BseSI	GKGCMC	1 cut(s)	176
BseXI	GCAGC	2 cut(s)	299, 866
BseYI	CCCAGC	1 cut(s)	150
BshFI	GGCC	6 cut(s)	6, 124, 148, 559, 699, 957
BshNI	GGYRCC	2 cut(s)	281, 909
BslFI	GGGAC	2 cut(s)	116, 841
BslI	CCNNNNNNNGG	7 cut(s)	98, 120, 261, 305, 597, 864, 895
BsmFI	GGGAC	2 cut(s)	116, 841
BsmI	GAATGC	2 cut(s)	385, 607
BsnI	GGCC	6 cut(s)	6, 124, 148, 559, 699, 957
Bsp1286I	GDGCHC	1 cut(s)	176
Bsp143I	GATC	6 cut(s)	421, 442, 784, 802, 808, 926
Bsp19I	CCATGG	2 cut(s)	75, 889
BspANI	GGCC	6 cut(s)	6, 124, 148, 559, 699, 957
BspCNI	CTCAG	3 cut(s)	135, 244, 300
BspHI	TCATGA	2 cut(s)	799, 942
BspLI	GGNNCC	4 cut(s)	149, 283, 911, 958
BspMAI	CTGCAG	2 cut(s)	260, 317
BspMI	ACCTGC	3 cut(s)	122, 263, 504
BspPI	GGATC	2 cut(s)	816, 934
BspT107I	GGYRCC	2 cut(s)	281, 909
BsrI	ACTGG	2 cut(s)	47, 272
BssECI	CCNNGG	5 cut(s)	75, 236, 554, 874, 889
BssMI	GATC	6 cut(s)	421, 442, 784, 802, 808, 926
BssSI	CACGAG	1 cut(s)	62
BssT1I	CCWWGG	5 cut(s)	75, 236, 554, 874, 889
Bst2BI	CACGAG	1 cut(s)	62
Bst4CI	ACNGT	1 cut(s)	743
Bst6I	CTCTTC	1 cut(s)	88
BstAPI	GCANNNNNTGC	1 cut(s)	255
BstC8I	GCNNGC	2 cut(s)	385, 660
BstDEI	CTNAG	4 cut(s)	143, 231, 287, 846
BstDSI	CCRYGG	2 cut(s)	75, 889
BstENI	CCTNNNNNAGG	1 cut(s)	259
BstF5I	GGATG	3 cut(s)	392, 723, 835
BstKTI	GATC	6 cut(s)	424, 445, 787, 805, 811, 929
BstMBI	GATC	6 cut(s)	421, 442, 784, 802, 808, 926
BstMWI	GCNNNNNNNGC	1 cut(s)	255
BstNSI	RCATGY	1 cut(s)	109
BstPAI	GACNNNNGTC	1 cut(s)	938
BstSFI	CTRYAG	3 cut(s)	220, 256, 313
BstSLI	GKGCMC	1 cut(s)	176
BstV1I	GCAGC	2 cut(s)	299, 866
BstXI	CCANNNNNNTGG	1 cut(s)	383
Bsu36I	CCTNAGG	1 cut(s)	287
BsuRI	GGCC	6 cut(s)	6, 124, 148, 559, 699, 957
BtgI	CCRYGG	2 cut(s)	75, 889
BtsCI	GGATG	3 cut(s)	392, 723, 835
BveI	ACCTGC	3 cut(s)	122, 263, 504
Cac8I	GCNNGC	2 cut(s)	385, 660
CciI	TCATGA	2 cut(s)	799, 942
Cfr13I	GGNCC	6 cut(s)	4, 123, 147, 270, 933, 956
Csp6I	GTAC	4 cut(s)	241, 265, 517, 910
CviQI	GTAC	4 cut(s)	241, 265, 517, 910
DdeI	CTNAG	4 cut(s)	143, 231, 287, 846
DpnI	GATC	6 cut(s)	423, 444, 786, 804, 810, 928
DpnII	GATC	6 cut(s)	421, 442, 784, 802, 808, 926
Eam1104I	CTCTTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	88
Eco130I	CCWWGG	5 cut(s)	75, 236, 554, 874, 889
Eco147I	AGGCCT	1 cut(s)	559
Eco47I	GGWCC	2 cut(s)	270, 933
Eco81I	CCTNAGG	1 cut(s)	287
EcoNI	CCTNNNNNAGG	1 cut(s)	259
EcoO109I	RGGNCCY	1 cut(s)	147
EcoT14I	CCWWGG	5 cut(s)	75, 236, 554, 874, 889
ErhI	CCWWGG	5 cut(s)	75, 236, 554, 874, 889
FaqI	GGGAC	2 cut(s)	116, 841
FauNDI	CATATG	1 cut(s)	781
FbaI	TGATCA	3 cut(s)	442, 784, 802
Fnu4HI	GCNGC	2 cut(s)	313, 880
FokI	GGATG	3 cut(s)	379, 730, 842
Fsp4HI	GCNGC	2 cut(s)	313, 880
FspBI	CTAG	5 cut(s)	177, 237, 498, 606, 923
GluI	GCNGC	2 cut(s)	313, 880
GsaI	CCCAGC	1 cut(s)	154
HaeIII	GGCC	6 cut(s)	6, 124, 148, 559, 699, 957
HincII	GTYRAC	1 cut(s)	111
HindII	GTYRAC	1 cut(s)	111
HinfI	GANTC	6 cut(s)	32, 68, 80, 185, 680, 899
HpaI	GTTAAC	1 cut(s)	111
HphI	GGTGA	4 cut(s)	81, 689, 779, 806
Hpy166II	GTNNAC	1 cut(s)	111
Hpy188I	TCNGA	3 cut(s)	40, 447, 886
Hpy188III	TCNNGA	5 cut(s)	289, 440, 800, 806, 943
Hpy8I	GTNNAC	1 cut(s)	111
HpyAV	CCTTC	2 cut(s)	132, 255
HpyCH4III	ACNGT	1 cut(s)	743
HpyCH4V	TGCA	8 cut(s)	19, 27, 61, 249, 258, 315, 451, 662
HpyF10VI	GCNNNNNNNGC	1 cut(s)	255
HpyF3I	CTNAG	4 cut(s)	143, 231, 287, 846
KpnI	GGTACC	1 cut(s)	913
Ksp22I	TGATCA	3 cut(s)	442, 784, 802
KspAI	GTTAAC	1 cut(s)	111
Kzo9I	GATC	6 cut(s)	421, 442, 784, 802, 808, 926
Lsp1109I	GCAGC	2 cut(s)	299, 866
LweI	GCATC	3 cut(s)	48, 438, 465
MaeI	CTAG	5 cut(s)	177, 237, 498, 606, 923
MaeIII	GTNAC	3 cut(s)	45, 182, 774
MalI	GATC	6 cut(s)	423, 444, 786, 804, 810, 928
MboI	GATC	6 cut(s)	421, 442, 784, 802, 808, 926
MboII	GAAGA	1 cut(s)	75
MhlI	GDGCHC	1 cut(s)	176
MluCI	AATT	5 cut(s)	452, 581, 610, 745, 949
MlyI	GAGTC	5 cut(s)	62, 74, 179, 689, 908
MseI	TTAA	1 cut(s)	110
MslI	CAYNNNNRTG	3 cut(s)	299, 465, 819
Mva1269I	GAATGC	2 cut(s)	385, 607
MwoI	GCNNNNNNNGC	1 cut(s)	255
NcoI	CCATGG	2 cut(s)	75, 889
NdeI	CATATG	1 cut(s)	781
NdeII	GATC	6 cut(s)	421, 442, 784, 802, 808, 926
NlaIV	GGNNCC	4 cut(s)	149, 283, 911, 958
NmuCI	GTSAC	1 cut(s)	182
NspI	RCATGY	1 cut(s)	109
PagI	TCATGA	2 cut(s)	799, 942
PceI	AGGCCT	1 cut(s)	559
PciI	ACATGT	1 cut(s)	105
PctI	GAATGC	2 cut(s)	385, 607
PfeI	GAWTC	1 cut(s)	32
PflMI	CCANNNNNTGG	1 cut(s)	98
PkrI	GCNGC	2 cut(s)	314, 881
PleI	GAGTC	5 cut(s)	62, 74, 179, 688, 907
PpsI	GAGTC	5 cut(s)	62, 74, 179, 688, 907
PscI	ACATGT	1 cut(s)	105
PshAI	GACNNNNGTC	1 cut(s)	938
PspFI	CCCAGC	1 cut(s)	150
PspN4I	GGNNCC	4 cut(s)	149, 283, 911, 958
PspPI	GGNCC	6 cut(s)	4, 123, 147, 270, 933, 956
PstI	CTGCAG	2 cut(s)	260, 317
RsaI	GTAC	4 cut(s)	242, 266, 518, 911
RsaNI	GTAC	4 cut(s)	241, 265, 517, 910
RseI	CAYNNNNRTG	3 cut(s)	299, 465, 819
SaqAI	TTAA	1 cut(s)	110
SatI	GCNGC	2 cut(s)	313, 880
Sau3AI	GATC	6 cut(s)	421, 442, 784, 802, 808, 926
Sau96I	GGNCC	6 cut(s)	4, 123, 147, 270, 933, 956
SchI	GAGTC	5 cut(s)	62, 74, 179, 689, 908
SduI	GDGCHC	1 cut(s)	176
SfaNI	GCATC	3 cut(s)	48, 438, 465
SfcI	CTRYAG	3 cut(s)	220, 256, 313
SinI	GGWCC	2 cut(s)	270, 933
SmiMI	CAYNNNNRTG	3 cut(s)	299, 465, 819
SmlI	CTYRAG	3 cut(s)	167, 530, 860
SmoI	CTYRAG	3 cut(s)	167, 530, 860
Sse9I	AATT	5 cut(s)	452, 581, 610, 745, 949
SseBI	AGGCCT	1 cut(s)	559
SspMI	CTAG	5 cut(s)	177, 237, 498, 606, 923
StuI	AGGCCT	1 cut(s)	559
StyI	CCWWGG	5 cut(s)	75, 236, 554, 874, 889
TaaI	ACNGT	1 cut(s)	743
TasI	AATT	5 cut(s)	452, 581, 610, 745, 949
TfiI	GAWTC	1 cut(s)	32
Tru1I	TTAA	1 cut(s)	110
Tru9I	TTAA	1 cut(s)	110
TseFI	GTSAC	1 cut(s)	182
TseI	GCWGC	2 cut(s)	312, 879
Tsp45I	GTSAC	1 cut(s)	182
TspDTI	ATGAA	8 cut(s)	24, 386, 423, 493, 559, 680, 739, 959
Van91I	CCANNNNNTGG	1 cut(s)	98
VpaK11BI	GGWCC	2 cut(s)	270, 933
XagI	CCTNNNNNAGG	1 cut(s)	259
XceI	RCATGY	1 cut(s)	109
XmaJI	CCTAGG	1 cut(s)	236
XspI	CTAG	5 cut(s)	177, 237, 498, 606, 923

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.