Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0014572

Physical Location & Seq

Genomic Coordinates Forward (+)

57826107 .. 57827769

Gene Structure 1663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004265

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGGTCATAATTCTCTACAAGTTTGCATGGATTCATCTGACTGGCTTCAGGGCTCGATTCACGAGGACCAGTCTCCGATGGACTCTTCGTCACCACTATCCGGCGACATCTTAACATGCTCAAGGCCCTTGATAGAGAGAAGGTTGAGGCCACCGCATGACCAATCCCTCAAGTGCCCTAGGTGCGACTCCACCCACACCAAGTTCTGCTACTACAATAACTACAGCCTCTCTCAGCCTAGGTACTTCTGCAAGACCTGTAGAAGGTACTGGACCAAAGGAGGTACACTCAGAAACATTCCTGTTGGTGGTGGTTGTAGAAAGAACAAGAAGGTTGCTTCCAAGAAACCCAATGAAGATCACAGTCCCTCCATGAACCCTATCCATCTTGGGTCGTCATCTTCGTCTTCTCAACACAACCCTACTGATCTCCAGCTCTCGTTCCCGGACCAGATGCAGTTTTCGCATCTGAATAACTTGATGCTTGGTGCTCAAGGGACAGGAAACCCTAATTTCATGGATGGCAGGTATGGTAACATTAACGGTATGCTTGAGAATTCAAACCAGTTGAGGCCAATTGACTTCATGGAGAGTAAGTTGGAAGCTATAGTGGGGAATGCTAGGAACTACGATTTCATGGGGAGTGGTGGTGATAGTTTGGGTATGGTAGGTGGCCTTAGTAATATGGGGGCTCATGGACTGGAATCTGGCTTCCATGGTTTTTGTTCTAGTCCATTTGGATCAATGTCTCTTGATCATCATGGGAATAACAATGGGACTAATTTCATGGACACTTGCCAGAGGTTAATGTTGCCATATGAAGCAAATGAGGATCATCACCATCATCAAAATGAAATTCATGATGTGAAGCCAAACACTAAGCTCTTGTCTCTTGAGTGGCAAGACCAAGGCTGCTCAGACGTCGGAAAAGAATCATCATATGGGTACCTCAATGGTCTCGGAACATGGACAGGCGTGATGAACAACTACGGGCCATCCACGACGAACTCATTAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010065 GO:0010067 GO:0010087 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048316 GO:0048507 GO:0048508 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

340

Amino Acids

37.51

Weight (kDa)

6.36

Isoelectric Point (pI)

42.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	54 - 111	6.6e-34	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62940
fragaria_vesca	FvH4_5g05330
malus_domestica	MD06G1173600.v1.1 MD14G1180100.v1.1
prunus_persica	Prupe.5G173100_v2.0.a1
pyrus_communis	pycom06g15480 pycom14g14990
rosa_chinensis	RchiOBHm_Chr7g0193511
rosa_laevigata	RLG00000004265
rosa_multiflora	Rmu_sc0006688.1_g000002
rosa_roxburghii	Rroxscaffold_3G00262040
rosa_rugosa	Rorug07G0009900
rosa_samantha	Rh7AG136800 Rh7BG137100 Rh7CG140400 Rh7DG138200
rosa_wichuraiana	Rw7G011650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	924
Acc36I	ACCTGC	1 cut(s)	516
Acc65I	GGTACC	1 cut(s)	945
AccB1I	GGYRCC	1 cut(s)	945
AciI	CCGC	1 cut(s)	155
AclWI	GGATC	2 cut(s)	748, 840
AcsI	RAATTY	2 cut(s)	556, 855
AcuI	CTGAAG	1 cut(s)	32
AcyI	GRCGYC	1 cut(s)	921
AfaI	GTAC	4 cut(s)	245, 269, 286, 947
AfiI	CCNNNNNNNGG	3 cut(s)	101, 264, 308
AgsI	TTSAA	1 cut(s)	561
AhdI	GACNNNNNGTC	1 cut(s)	88
AluBI	AGCT	3 cut(s)	436, 605, 883
AluI	AGCT	3 cut(s)	436, 605, 883
Alw21I	GWGCWC	1 cut(s)	493
Alw26I	GTCTC	4 cut(s)	78, 753, 894, 962
AlwI	GGATC	2 cut(s)	748, 840
AoxI	GGCC	5 cut(s)	125, 149, 572, 673, 992
ApeKI	GCWGC	1 cut(s)	912
ApoI	RAATTY	2 cut(s)	556, 855
Asp718I	GGTACC	1 cut(s)	945
AspA2I	CCTAGG	2 cut(s)	179, 239
AspS9I	GGNCC	5 cut(s)	67, 126, 273, 448, 992
AsuC2I	CCSGG	1 cut(s)	446
AsuHPI	GGTGA	3 cut(s)	84, 662, 830
AvaII	GGWCC	3 cut(s)	67, 273, 448
AvrII	CCTAGG	2 cut(s)	179, 239
BaeGI	GKGCMC	1 cut(s)	179
BanI	GGYRCC	1 cut(s)	945
BanII	GRGCYC	2 cut(s)	56, 694
BauI	CACGAG	1 cut(s)	62
BbsI	GAAGAC	1 cut(s)	399
Bbv12I	GWGCWC	1 cut(s)	493
BbvI	GCAGC	1 cut(s)	899
BccI	CCATC	5 cut(s)	73, 393, 515, 849, 1003
BclI	TGATCA	1 cut(s)	754
BcnI	CCSGG	1 cut(s)	446
BcoDI	GTCTC	4 cut(s)	78, 753, 894, 962
BfaI	CTAG	4 cut(s)	180, 240, 621, 729
BfmI	CTRYAG	3 cut(s)	223, 259, 606
BfuAI	ACCTGC	1 cut(s)	516
BisI	GCNGC	1 cut(s)	913
BlnI	CCTAGG	2 cut(s)	179, 239
BlsI	GCNGC	1 cut(s)	914
Bme1390I	CCNGG	1 cut(s)	446
Bme18I	GGWCC	3 cut(s)	67, 273, 448
BmeRI	GACNNNNNGTC	1 cut(s)	88
BmgT120I	GGNCC	5 cut(s)	67, 126, 273, 448, 992
BmiI	GGNNCC	1 cut(s)	947
BmrFI	CCNGG	1 cut(s)	446
BmsI	GCATC	3 cut(s)	444, 471, 475
BpiI	GAAGAC	1 cut(s)	399
BplI	GAGNNNNNCTC	2 cut(s)	273, 305
BpmI	CTGGAG	1 cut(s)	416
BpuEI	CTTGAG	5 cut(s)	106, 155, 477, 572, 914
BpuMI	CCSGG	1 cut(s)	446
BsaHI	GRCGYC	1 cut(s)	921
BsaI	GGTCTC	1 cut(s)	962
BsaJI	CCNNGG	4 cut(s)	179, 239, 715, 907
BsaXI	ACNNNNNCTCC	6 cut(s)	353, 383, 581, 611, 634, 664
Bsc4I	CCNNNNNNNGG	3 cut(s)	101, 264, 308
Bse1I	ACTGG	5 cut(s)	47, 70, 275, 565, 705
BseDI	CCNNGG	4 cut(s)	179, 239, 715, 907
BseGI	GGATG	2 cut(s)	526, 995
BseLI	CCNNNNNNNGG	3 cut(s)	101, 264, 308
BseMII	CTCAG	3 cut(s)	248, 304, 930
BseNI	ACTGG	5 cut(s)	47, 70, 275, 565, 705
BseSI	GKGCMC	1 cut(s)	179
BseXI	GCAGC	1 cut(s)	899
BshFI	GGCC	5 cut(s)	127, 151, 574, 675, 994
BshNI	GGYRCC	1 cut(s)	945
BsiHKAI	GWGCWC	1 cut(s)	493
BsiSI	CCGG	2 cut(s)	102, 446
BslFI	GGGAC	3 cut(s)	351, 511, 790
BslI	CCNNNNNNNGG	3 cut(s)	101, 264, 308
BsmAI	GTCTC	4 cut(s)	78, 753, 894, 962
BsmFI	GGGAC	3 cut(s)	351, 511, 790
BsmI	GAATGC	1 cut(s)	622
BsnI	GGCC	5 cut(s)	127, 151, 574, 675, 994
Bso31I	GGTCTC	1 cut(s)	962
Bsp1286I	GDGCHC	4 cut(s)	56, 179, 493, 694
Bsp143I	GATC	5 cut(s)	358, 427, 740, 754, 832
Bsp19I	CCATGG	1 cut(s)	715
BspACI	CCGC	1 cut(s)	155
BspANI	GGCC	5 cut(s)	127, 151, 574, 675, 994
BspCNI	CTCAG	3 cut(s)	247, 303, 929
BspHI	TCATGA	1 cut(s)	859
BspLI	GGNNCC	1 cut(s)	947
BspMI	ACCTGC	1 cut(s)	516
BspPI	GGATC	2 cut(s)	748, 840
BspT107I	GGYRCC	1 cut(s)	945
BspTNI	GGTCTC	1 cut(s)	962
BsrI	ACTGG	5 cut(s)	47, 70, 275, 565, 705
BssECI	CCNNGG	4 cut(s)	179, 239, 715, 907
BssMI	GATC	5 cut(s)	358, 427, 740, 754, 832
BssNI	GRCGYC	1 cut(s)	921
BssSI	CACGAG	1 cut(s)	62
BssT1I	CCWWGG	4 cut(s)	179, 239, 715, 907
Bst2BI	CACGAG	1 cut(s)	62
Bst4CI	ACNGT	2 cut(s)	365, 545
Bst6I	CTCTTC	1 cut(s)	91
BstACI	GRCGYC	1 cut(s)	921
BstDEI	CTNAG	5 cut(s)	234, 290, 677, 879, 916
BstDSI	CCRYGG	1 cut(s)	715
BstENI	CCTNNNNNAGG	1 cut(s)	262
BstF5I	GGATG	2 cut(s)	526, 995
BstKTI	GATC	5 cut(s)	361, 430, 743, 757, 835
BstMAI	GTCTC	4 cut(s)	78, 753, 894, 962
BstMBI	GATC	5 cut(s)	358, 427, 740, 754, 832
BstMWI	GCNNNNNNNGC	2 cut(s)	183, 463
BstNSI	RCATGY	1 cut(s)	120
BstSCI	CCNGG	1 cut(s)	444
BstSFI	CTRYAG	3 cut(s)	223, 259, 606
BstSLI	GKGCMC	1 cut(s)	179
BstV1I	GCAGC	1 cut(s)	899
BstV2I	GAAGAC	1 cut(s)	399
BsuRI	GGCC	5 cut(s)	127, 151, 574, 675, 994
BtgI	CCRYGG	1 cut(s)	715
BtsCI	GGATG	2 cut(s)	526, 995
BveI	ACCTGC	1 cut(s)	516
CciI	TCATGA	1 cut(s)	859
Cfr13I	GGNCC	5 cut(s)	67, 126, 273, 448, 992
Csp6I	GTAC	4 cut(s)	244, 268, 285, 946
CviQI	GTAC	4 cut(s)	244, 268, 285, 946
DdeI	CTNAG	5 cut(s)	234, 290, 677, 879, 916
DpnI	GATC	5 cut(s)	360, 429, 742, 756, 834
DpnII	GATC	5 cut(s)	358, 427, 740, 754, 832
DriI	GACNNNNNGTC	1 cut(s)	88
Eam1104I	CTCTTC	1 cut(s)	91
Eam1105I	GACNNNNNGTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	91
Eco130I	CCWWGG	4 cut(s)	179, 239, 715, 907
Eco24I	GRGCYC	2 cut(s)	56, 694
Eco31I	GGTCTC	1 cut(s)	962
Eco47I	GGWCC	3 cut(s)	67, 273, 448
Eco57I	CTGAAG	1 cut(s)	32
EcoNI	CCTNNNNNAGG	1 cut(s)	262
EcoO109I	RGGNCCY	1 cut(s)	126
EcoRI	GAATTC	1 cut(s)	556
EcoT14I	CCWWGG	4 cut(s)	179, 239, 715, 907
EcoT38I	GRGCYC	2 cut(s)	56, 694
ErhI	CCWWGG	4 cut(s)	179, 239, 715, 907
FaqI	GGGAC	3 cut(s)	351, 511, 790
FauNDI	CATATG	2 cut(s)	817, 940
FbaI	TGATCA	1 cut(s)	754
Fnu4HI	GCNGC	1 cut(s)	913
FokI	GGATG	2 cut(s)	533, 982
FriOI	GRGCYC	2 cut(s)	56, 694
Fsp4HI	GCNGC	1 cut(s)	913
FspBI	CTAG	4 cut(s)	180, 240, 621, 729
GluI	GCNGC	1 cut(s)	913
GsuI	CTGGAG	1 cut(s)	416
HaeIII	GGCC	5 cut(s)	127, 151, 574, 675, 994
HapII	CCGG	2 cut(s)	102, 446
Hin1I	GRCGYC	1 cut(s)	921
HinfI	GANTC	6 cut(s)	32, 58, 83, 188, 704, 932
HpaII	CCGG	2 cut(s)	102, 446
HphI	GGTGA	3 cut(s)	84, 662, 830
Hpy166II	GTNNAC	1 cut(s)	287
Hpy188I	TCNGA	7 cut(s)	40, 78, 293, 471, 919, 926, 962
Hpy188III	TCNNGA	4 cut(s)	62, 752, 860, 893
Hpy8I	GTNNAC	1 cut(s)	287
Hpy99I	CGWCG	2 cut(s)	926, 1006
HpyAV	CCTTC	3 cut(s)	135, 258, 325
HpyCH4III	ACNGT	2 cut(s)	365, 545
HpyCH4IV	ACGT	1 cut(s)	921
HpyCH4V	TGCA	3 cut(s)	27, 252, 457
HpyF10VI	GCNNNNNNNGC	2 cut(s)	183, 463
HpyF3I	CTNAG	5 cut(s)	234, 290, 677, 879, 916
HpySE526I	ACGT	1 cut(s)	921
Hsp92I	GRCGYC	1 cut(s)	921
KpnI	GGTACC	1 cut(s)	949
Ksp22I	TGATCA	1 cut(s)	754
Kzo9I	GATC	5 cut(s)	358, 427, 740, 754, 832
Lsp1109I	GCAGC	1 cut(s)	899
LweI	GCATC	3 cut(s)	444, 471, 475
MaeI	CTAG	4 cut(s)	180, 240, 621, 729
MaeII	ACGT	1 cut(s)	921
MaeIII	GTNAC	2 cut(s)	90, 533
MalI	GATC	5 cut(s)	360, 429, 742, 756, 834
MboI	GATC	5 cut(s)	358, 427, 740, 754, 832
MboII	GAAGA	4 cut(s)	78, 368, 393, 399
MfeI	CAATTG	1 cut(s)	576
MhlI	GDGCHC	4 cut(s)	56, 179, 493, 694
MluCI	AATT	6 cut(s)	10, 511, 556, 576, 781, 855
MlyI	GAGTC	2 cut(s)	77, 182
MmeI	TCCRAC	2 cut(s)	579, 904
MseI	TTAA	3 cut(s)	113, 540, 806
MslI	CAYNNNNRTG	1 cut(s)	849
MspI	CCGG	2 cut(s)	102, 446
MspR9I	CCNGG	1 cut(s)	446
MunI	CAATTG	1 cut(s)	576
Mva1269I	GAATGC	1 cut(s)	622
MwoI	GCNNNNNNNGC	2 cut(s)	183, 463
NciI	CCSGG	1 cut(s)	446
NcoI	CCATGG	1 cut(s)	715
NdeI	CATATG	2 cut(s)	817, 940
NdeII	GATC	5 cut(s)	358, 427, 740, 754, 832
NlaIV	GGNNCC	1 cut(s)	947
NmuCI	GTSAC	1 cut(s)	90
NspI	RCATGY	1 cut(s)	120
PagI	TCATGA	1 cut(s)	859
PcsI	WCGNNNNNNNCGW	1 cut(s)	401
PctI	GAATGC	1 cut(s)	622
PfeI	GAWTC	4 cut(s)	32, 58, 704, 932
PfoI	TCCNGGA	1 cut(s)	444
PkrI	GCNGC	1 cut(s)	914
PleI	GAGTC	2 cut(s)	77, 182
PpsI	GAGTC	2 cut(s)	77, 182
PspN4I	GGNNCC	1 cut(s)	947
PspPI	GGNCC	5 cut(s)	67, 126, 273, 448, 992
RsaI	GTAC	4 cut(s)	245, 269, 286, 947
RsaNI	GTAC	4 cut(s)	244, 268, 285, 946
RseI	CAYNNNNRTG	1 cut(s)	849
SaqAI	TTAA	3 cut(s)	113, 540, 806
SatI	GCNGC	1 cut(s)	913
Sau3AI	GATC	5 cut(s)	358, 427, 740, 754, 832
Sau96I	GGNCC	5 cut(s)	67, 126, 273, 448, 992
SchI	GAGTC	2 cut(s)	77, 182
ScrFI	CCNGG	1 cut(s)	446
SduI	GDGCHC	4 cut(s)	56, 179, 493, 694
SfaNI	GCATC	3 cut(s)	444, 471, 475
SfcI	CTRYAG	3 cut(s)	223, 259, 606
SinI	GGWCC	3 cut(s)	67, 273, 448
SmiMI	CAYNNNNRTG	1 cut(s)	849
SmlI	CTYRAG	5 cut(s)	121, 170, 492, 551, 893
SmoI	CTYRAG	5 cut(s)	121, 170, 492, 551, 893
Sse9I	AATT	6 cut(s)	10, 511, 556, 576, 781, 855
SsiI	CCGC	1 cut(s)	155
SspMI	CTAG	4 cut(s)	180, 240, 621, 729
StyD4I	CCNGG	1 cut(s)	444
StyI	CCWWGG	4 cut(s)	179, 239, 715, 907
TaaI	ACNGT	2 cut(s)	365, 545
TaiI	ACGT	1 cut(s)	924
TaqI	TCGA	1 cut(s)	56
TasI	AATT	6 cut(s)	10, 511, 556, 576, 781, 855
TfiI	GAWTC	4 cut(s)	32, 58, 704, 932
Tru1I	TTAA	3 cut(s)	113, 540, 806
Tru9I	TTAA	3 cut(s)	113, 540, 806
TseFI	GTSAC	1 cut(s)	90
TseI	GCWGC	1 cut(s)	912
Tsp45I	GTSAC	1 cut(s)	90
VpaK11BI	GGWCC	3 cut(s)	67, 273, 448
XagI	CCTNNNNNAGG	1 cut(s)	262
XapI	RAATTY	2 cut(s)	556, 855
XceI	RCATGY	1 cut(s)	120
XmaJI	CCTAGG	2 cut(s)	179, 239
XspI	CTAG	4 cut(s)	180, 240, 621, 729
ZraI	GACGTC	1 cut(s)	922

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.