Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0014572

Physical Location & Seq

Genomic Coordinates Reverse (-)

31334478 .. 31336919

Gene Structure 2442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1173600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGATTCATCTGACTGGCTACAAGGAGCGATTCACGAGGACTCTCCGATGGACTCATCCTCACCGTTATCCGGCGACATGTTAACGTGCTCGAGGCCTTTGATCGAGCGGAGGCTGAGGCCCCAGCACGACCAAGCCCTCAAGTGCCCTAGGTGCGAGTCCACCCACACCAAATTTTGCTACTACAACAACTACAGCCTCTCCCAACCTAGGTACTTTTGCAAGACCTGCAGAAGGTACTGGACCAAAGGTGGAACCCTCAGAAACATCCCCGTGGGCGGCGGGTGTAGAAAGAACAAGAAAGTTTCTTCCAAGAAACCCAATGATCAGAACCCTTCATCGCTGATGAACCAACACTACCACGCCGGATCCTCCTCCTCGTCGATATCTCACACCCCAACTGATCTCCACCTTTCATTTCCTGATCAGATGCAGTATTCACACCTCAATAACTTGATGCTTGGGAGTACTATGAACCCTAGTAGCTTCATGGACAACAGTAACCCTAGGCCTATTGATTTCATGGAGAGCAAGTTGGAGGCTATCGTGGGGAATGCCAGGAACTATGATTTCATGGGGAATGGTTCTGATTTGGGTATGATGGGTGGGTTTGGAAATAATATGGGTGGTGTTAGTCATGGATTGGATCATCAGTCAAGCTTTCATCACCATGGCATGTGCTCATCTCCATTTGGAATGTCATCACTTGATGGGCAGACTGGTAATTTCATGGACAGTTGCCAGAGGCTAATGTTGCCATATGATCAAGCAAATCATGAGGATCATCATCAGATTAATGCAATGGATGTGAAGCCAAACACAAAGCTCTTGTCACTTGAGTGGCAAGACCAAGGCTGCTCTGACCATGGAAAGGAGTCGTTTGGGTACCTCAATGGTCTAGGATCATGGACCAATGTGATGAACAATTATGGTCCCTCCACAACCAACCCTTTAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010065 GO:0010067 GO:0010087 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048316 GO:0048507 GO:0048508 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

320

Amino Acids

35.57

Weight (kDa)

6.61

Isoelectric Point (pI)

42.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	44 - 101	5.8e-34	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62940
fragaria_vesca	FvH4_5g05330
malus_domestica	MD06G1173600.v1.1 MD14G1180100.v1.1
prunus_persica	Prupe.5G173100_v2.0.a1
pyrus_communis	pycom06g15480 pycom14g14990
rosa_chinensis	RchiOBHm_Chr7g0193511
rosa_laevigata	RLG00000004265
rosa_multiflora	Rmu_sc0006688.1_g000002
rosa_roxburghii	Rroxscaffold_3G00262040
rosa_rugosa	Rorug07G0009900
rosa_samantha	Rh7AG136800 Rh7BG137100 Rh7CG140400 Rh7DG138200
rosa_wichuraiana	Rw7G011650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	236
Acc65I	GGTACC	1 cut(s)	885
AccB1I	GGYRCC	1 cut(s)	885
AccBSI	CCGCTC	1 cut(s)	109
AciI	CCGC	3 cut(s)	109, 279, 282
AclWI	GGATC	5 cut(s)	363, 376, 654, 789, 910
AcsI	RAATTY	1 cut(s)	173
AfaI	GTAC	4 cut(s)	215, 239, 469, 887
AfiI	CCNNNNNNNGG	5 cut(s)	71, 210, 234, 278, 871
AflIII	ACRYGT	1 cut(s)	78
AjnI	CCWGG	1 cut(s)	557
AleI	CACNNNNGTG	1 cut(s)	838
AluBI	AGCT	3 cut(s)	486, 660, 826
AluI	AGCT	3 cut(s)	486, 660, 826
Alw21I	GWGCWC	2 cut(s)	92, 683
AlwI	GGATC	5 cut(s)	363, 376, 654, 789, 910
Ama87I	CYCGRG	1 cut(s)	91
AoxI	GGCC	3 cut(s)	95, 119, 509
ApeKI	GCWGC	1 cut(s)	855
ApoI	RAATTY	1 cut(s)	173
ArsI	GACNNNNNNTTYG	2 cut(s)	815, 847
AseI	ATTAAT	1 cut(s)	795
Asp718I	GGTACC	1 cut(s)	885
AspA2I	CCTAGG	3 cut(s)	149, 209, 506
AspS9I	GGNCC	4 cut(s)	120, 243, 909, 932
AsuHPI	GGTGA	2 cut(s)	54, 659
AvaI	CYCGRG	1 cut(s)	91
AvaII	GGWCC	3 cut(s)	243, 909, 932
AvrII	CCTAGG	3 cut(s)	149, 209, 506
BaeGI	GKGCMC	1 cut(s)	149
BamHI	GGATCC	1 cut(s)	368
BanI	GGYRCC	1 cut(s)	885
BauI	CACGAG	1 cut(s)	35
Bbv12I	GWGCWC	2 cut(s)	92, 683
BbvCI	CCTCAGC	1 cut(s)	116
BbvI	GCAGC	1 cut(s)	842
BccI	CCATC	3 cut(s)	43, 595, 704
BciT130I	CCWGG	1 cut(s)	559
BclI	TGATCA	3 cut(s)	325, 424, 763
BfaI	CTAG	5 cut(s)	150, 210, 480, 507, 899
BfmI	CTRYAG	2 cut(s)	193, 229
BfuAI	ACCTGC	1 cut(s)	236
BisI	GCNGC	2 cut(s)	280, 856
BlnI	CCTAGG	3 cut(s)	149, 209, 506
BlsI	GCNGC	2 cut(s)	281, 857
BmcAI	AGTACT	1 cut(s)	469
Bme1390I	CCNGG	1 cut(s)	559
Bme18I	GGWCC	3 cut(s)	243, 909, 932
BmeT110I	CYCGRG	1 cut(s)	91
BmgT120I	GGNCC	4 cut(s)	120, 243, 909, 932
BmiI	GGNNCC	5 cut(s)	122, 256, 370, 887, 934
BmrFI	CCNGG	1 cut(s)	559
BmsI	GCATC	2 cut(s)	420, 447
Bpu10I	CCTNAGC	1 cut(s)	116
BpuEI	CTTGAG	2 cut(s)	125, 857
BsaBI	GATNNNNATC	1 cut(s)	786
BsaJI	CCNNGG	7 cut(s)	149, 209, 273, 506, 670, 850, 865
BsaXI	ACNNNNNCTCC	4 cut(s)	185, 215, 518, 548
Bsc4I	CCNNNNNNNGG	5 cut(s)	71, 210, 234, 278, 871
Bse1I	ACTGG	3 cut(s)	20, 245, 724
Bse3DI	GCAATG	1 cut(s)	807
Bse8I	GATNNNNATC	1 cut(s)	786
BseBI	CCWGG	1 cut(s)	559
BseDI	CCNNGG	7 cut(s)	149, 209, 273, 506, 670, 850, 865
BseGI	GGATG	3 cut(s)	56, 267, 811
BseJI	GATNNNNATC	1 cut(s)	786
BseLI	CCNNNNNNNGG	5 cut(s)	71, 210, 234, 278, 871
BseMI	GCAATG	1 cut(s)	807
BseMII	CTCAG	2 cut(s)	107, 274
BseNI	ACTGG	3 cut(s)	20, 245, 724
BseRI	GAGGAG	2 cut(s)	364, 367
BseSI	GKGCMC	1 cut(s)	149
BseXI	GCAGC	1 cut(s)	842
BseYI	CCCAGC	1 cut(s)	123
BshFI	GGCC	3 cut(s)	97, 121, 511
BshNI	GGYRCC	1 cut(s)	885
BsiHKAI	GWGCWC	2 cut(s)	92, 683
BsiHKCI	CYCGRG	1 cut(s)	91
BsiSI	CCGG	2 cut(s)	72, 366
BslFI	GGGAC	1 cut(s)	918
BslI	CCNNNNNNNGG	5 cut(s)	71, 210, 234, 278, 871
BsmFI	GGGAC	1 cut(s)	918
BsmI	GAATGC	1 cut(s)	559
BsnI	GGCC	3 cut(s)	97, 121, 511
BsoBI	CYCGRG	1 cut(s)	91
Bsp1286I	GDGCHC	3 cut(s)	92, 149, 683
Bsp143I	GATC	9 cut(s)	102, 325, 368, 403, 424, 646, 763, 781, 902
Bsp19I	CCATGG	2 cut(s)	670, 865
BspACI	CCGC	3 cut(s)	109, 279, 282
BspANI	GGCC	3 cut(s)	97, 121, 511
BspCNI	CTCAG	2 cut(s)	108, 273
BspHI	TCATGA	1 cut(s)	775
BspLI	GGNNCC	5 cut(s)	122, 256, 370, 887, 934
BspMAI	CTGCAG	1 cut(s)	233
BspMI	ACCTGC	1 cut(s)	236
BspPI	GGATC	5 cut(s)	363, 376, 654, 789, 910
BspT107I	GGYRCC	1 cut(s)	885
BsrBI	CCGCTC	1 cut(s)	109
BsrDI	GCAATG	1 cut(s)	807
BsrI	ACTGG	3 cut(s)	20, 245, 724
BssECI	CCNNGG	7 cut(s)	149, 209, 273, 506, 670, 850, 865
BssMI	GATC	9 cut(s)	102, 325, 368, 403, 424, 646, 763, 781, 902
BssSI	CACGAG	1 cut(s)	35
BssT1I	CCWWGG	6 cut(s)	149, 209, 506, 670, 850, 865
Bst2BI	CACGAG	1 cut(s)	35
Bst2UI	CCWGG	1 cut(s)	559
Bst4CI	ACNGT	3 cut(s)	66, 500, 737
BstAPI	GCANNNNNTGC	1 cut(s)	228
BstDEI	CTNAG	2 cut(s)	116, 260
BstDSI	CCRYGG	3 cut(s)	273, 670, 865
BstENI	CCTNNNNNAGG	1 cut(s)	232
BstF5I	GGATG	3 cut(s)	56, 267, 811
BstKTI	GATC	9 cut(s)	105, 328, 371, 406, 427, 649, 766, 784, 905
BstMBI	GATC	9 cut(s)	102, 325, 368, 403, 424, 646, 763, 781, 902
BstMWI	GCNNNNNNNGC	3 cut(s)	153, 228, 754
BstNI	CCWGG	1 cut(s)	559
BstNSI	RCATGY	2 cut(s)	82, 679
BstSCI	CCNGG	1 cut(s)	557
BstSFI	CTRYAG	2 cut(s)	193, 229
BstSLI	GKGCMC	1 cut(s)	149
BstV1I	GCAGC	1 cut(s)	842
BstX2I	RGATCY	1 cut(s)	368
BstYI	RGATCY	1 cut(s)	368
BsuRI	GGCC	3 cut(s)	97, 121, 511
BtgI	CCRYGG	3 cut(s)	273, 670, 865
BtgZI	GCGATG	1 cut(s)	324
BtsCI	GGATG	3 cut(s)	56, 267, 811
BveI	ACCTGC	1 cut(s)	236
CciI	TCATGA	1 cut(s)	775
Cfr13I	GGNCC	4 cut(s)	120, 243, 909, 932
Csp6I	GTAC	4 cut(s)	214, 238, 468, 886
CviQI	GTAC	4 cut(s)	214, 238, 468, 886
DdeI	CTNAG	2 cut(s)	116, 260
DpnI	GATC	9 cut(s)	104, 327, 370, 405, 426, 648, 765, 783, 904
DpnII	GATC	9 cut(s)	102, 325, 368, 403, 424, 646, 763, 781, 902
Eco130I	CCWWGG	6 cut(s)	149, 209, 506, 670, 850, 865
Eco147I	AGGCCT	2 cut(s)	97, 511
Eco32I	GATATC	1 cut(s)	387
Eco47I	GGWCC	3 cut(s)	243, 909, 932
Eco88I	CYCGRG	1 cut(s)	91
EcoNI	CCTNNNNNAGG	1 cut(s)	232
EcoO109I	RGGNCCY	1 cut(s)	120
EcoRII	CCWGG	1 cut(s)	557
EcoRV	GATATC	1 cut(s)	387
EcoT14I	CCWWGG	6 cut(s)	149, 209, 506, 670, 850, 865
ErhI	CCWWGG	6 cut(s)	149, 209, 506, 670, 850, 865
FaqI	GGGAC	1 cut(s)	918
FauI	CCCGC	1 cut(s)	275
FauNDI	CATATG	1 cut(s)	760
FbaI	TGATCA	3 cut(s)	325, 424, 763
Fnu4HI	GCNGC	2 cut(s)	280, 856
FokI	GGATG	3 cut(s)	43, 254, 818
Fsp4HI	GCNGC	2 cut(s)	280, 856
FspBI	CTAG	5 cut(s)	150, 210, 480, 507, 899
GluI	GCNGC	2 cut(s)	280, 856
GsaI	CCCAGC	1 cut(s)	127
HaeIII	GGCC	3 cut(s)	97, 121, 511
HapII	CCGG	2 cut(s)	72, 366
HincII	GTYRAC	1 cut(s)	84
HindII	GTYRAC	1 cut(s)	84
HindIII	AAGCTT	1 cut(s)	658
HinfI	GANTC	6 cut(s)	5, 31, 41, 53, 158, 875
HpaI	GTTAAC	1 cut(s)	84
HpaII	CCGG	2 cut(s)	72, 366
HphI	GGTGA	2 cut(s)	54, 659
Hpy166II	GTNNAC	2 cut(s)	84, 162
Hpy188I	TCNGA	8 cut(s)	13, 48, 263, 330, 429, 589, 792, 862
Hpy188III	TCNNGA	3 cut(s)	35, 422, 776
Hpy8I	GTNNAC	2 cut(s)	84, 162
Hpy99I	CGWCG	1 cut(s)	385
HpyAV	CCTTC	2 cut(s)	228, 345
HpyCH4III	ACNGT	3 cut(s)	66, 500, 737
HpyCH4IV	ACGT	1 cut(s)	86
HpyCH4V	TGCA	4 cut(s)	222, 231, 433, 800
HpyF10VI	GCNNNNNNNGC	3 cut(s)	153, 228, 754
HpyF3I	CTNAG	2 cut(s)	116, 260
HpySE526I	ACGT	1 cut(s)	86
KpnI	GGTACC	1 cut(s)	889
Ksp22I	TGATCA	3 cut(s)	325, 424, 763
KspAI	GTTAAC	1 cut(s)	84
Kzo9I	GATC	9 cut(s)	102, 325, 368, 403, 424, 646, 763, 781, 902
LmnI	GCTCC	1 cut(s)	26
Lsp1109I	GCAGC	1 cut(s)	842
LweI	GCATC	2 cut(s)	420, 447
MaeI	CTAG	5 cut(s)	150, 210, 480, 507, 899
MaeII	ACGT	1 cut(s)	86
MaeIII	GTNAC	2 cut(s)	500, 831
MalI	GATC	9 cut(s)	104, 327, 370, 405, 426, 648, 765, 783, 904
MbiI	CCGCTC	1 cut(s)	109
MboI	GATC	9 cut(s)	102, 325, 368, 403, 424, 646, 763, 781, 902
MboII	GAAGA	1 cut(s)	300
MflI	RGATCY	1 cut(s)	368
MhlI	GDGCHC	3 cut(s)	92, 149, 683
MluCI	AATT	3 cut(s)	173, 724, 925
MlyI	GAGTC	4 cut(s)	35, 47, 167, 884
MmeI	TCCRAC	1 cut(s)	516
MseI	TTAA	2 cut(s)	83, 795
MslI	CAYNNNNRTG	3 cut(s)	272, 669, 838
MspI	CCGG	2 cut(s)	72, 366
MspR9I	CCNGG	1 cut(s)	559
Mva1269I	GAATGC	1 cut(s)	559
MvaI	CCWGG	1 cut(s)	559
MwoI	GCNNNNNNNGC	3 cut(s)	153, 228, 754
NcoI	CCATGG	2 cut(s)	670, 865
NdeI	CATATG	1 cut(s)	760
NdeII	GATC	9 cut(s)	102, 325, 368, 403, 424, 646, 763, 781, 902
NlaIV	GGNNCC	5 cut(s)	122, 256, 370, 887, 934
NmuCI	GTSAC	1 cut(s)	831
NspI	RCATGY	2 cut(s)	82, 679
OliI	CACNNNNGTG	1 cut(s)	838
PaeR7I	CTCGAG	1 cut(s)	91
PagI	TCATGA	1 cut(s)	775
PceI	AGGCCT	2 cut(s)	97, 511
PciI	ACATGT	1 cut(s)	78
PctI	GAATGC	1 cut(s)	559
PfeI	GAWTC	2 cut(s)	5, 31
PkrI	GCNGC	2 cut(s)	281, 857
PleI	GAGTC	4 cut(s)	35, 47, 166, 883
PpsI	GAGTC	4 cut(s)	35, 47, 166, 883
PscI	ACATGT	1 cut(s)	78
PshBI	ATTAAT	1 cut(s)	795
Psp6I	CCWGG	1 cut(s)	557
PspFI	CCCAGC	1 cut(s)	123
PspGI	CCWGG	1 cut(s)	557
PspN4I	GGNNCC	5 cut(s)	122, 256, 370, 887, 934
PspPI	GGNCC	4 cut(s)	120, 243, 909, 932
PspXI	VCTCGAGB	1 cut(s)	91
PsrI	GAACNNNNNNTAC	2 cut(s)	341, 373
PstI	CTGCAG	1 cut(s)	233
PsuI	RGATCY	1 cut(s)	368
RsaI	GTAC	4 cut(s)	215, 239, 469, 887
RsaNI	GTAC	4 cut(s)	214, 238, 468, 886
RseI	CAYNNNNRTG	3 cut(s)	272, 669, 838
SaqAI	TTAA	2 cut(s)	83, 795
SatI	GCNGC	2 cut(s)	280, 856
Sau3AI	GATC	9 cut(s)	102, 325, 368, 403, 424, 646, 763, 781, 902
Sau96I	GGNCC	4 cut(s)	120, 243, 909, 932
ScaI	AGTACT	1 cut(s)	469
SchI	GAGTC	4 cut(s)	35, 47, 167, 884
ScrFI	CCNGG	1 cut(s)	559
SduI	GDGCHC	3 cut(s)	92, 149, 683
SfaNI	GCATC	2 cut(s)	420, 447
SfcI	CTRYAG	2 cut(s)	193, 229
Sfr274I	CTCGAG	1 cut(s)	91
SinI	GGWCC	3 cut(s)	243, 909, 932
SlaI	CTCGAG	1 cut(s)	91
SmiMI	CAYNNNNRTG	3 cut(s)	272, 669, 838
SmlI	CTYRAG	3 cut(s)	91, 140, 836
SmoI	CTYRAG	3 cut(s)	91, 140, 836
Sse9I	AATT	3 cut(s)	173, 724, 925
SseBI	AGGCCT	2 cut(s)	97, 511
SsiI	CCGC	3 cut(s)	109, 279, 282
SspMI	CTAG	5 cut(s)	150, 210, 480, 507, 899
StuI	AGGCCT	2 cut(s)	97, 511
StyD4I	CCNGG	1 cut(s)	557
StyI	CCWWGG	6 cut(s)	149, 209, 506, 670, 850, 865
TaaI	ACNGT	3 cut(s)	66, 500, 737
TaiI	ACGT	1 cut(s)	89
TaqI	TCGA	3 cut(s)	92, 105, 383
TasI	AATT	3 cut(s)	173, 724, 925
TatI	WGTACW	1 cut(s)	467
TauI	GCSGC	1 cut(s)	282
TfiI	GAWTC	2 cut(s)	5, 31
Tru1I	TTAA	2 cut(s)	83, 795
Tru9I	TTAA	2 cut(s)	83, 795
TseFI	GTSAC	1 cut(s)	831
TseI	GCWGC	1 cut(s)	855
Tsp45I	GTSAC	1 cut(s)	831
VpaK11BI	GGWCC	3 cut(s)	243, 909, 932
VspI	ATTAAT	1 cut(s)	795
XagI	CCTNNNNNAGG	1 cut(s)	232
XapI	RAATTY	1 cut(s)	173
XceI	RCATGY	2 cut(s)	82, 679
XhoI	CTCGAG	1 cut(s)	91
XmaJI	CCTAGG	3 cut(s)	149, 209, 506
XspI	CTAG	5 cut(s)	150, 210, 480, 507, 899
ZrmI	AGTACT	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.