Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005816

Physical Location & Seq

Genomic Coordinates Reverse (-)

25463362 .. 25465922

Gene Structure 2561 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G63610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1413 bp

ATGGGAGATGGGAGTTCCAGTAGATCCAACAGCTCAAACAGCACTAGTGAGAAACCAGAGTGGCTGCAACAGTACAATCTCGTTGGTAAGATTGGTGAAGGCACTTATGGTCTTGTTTTCTTGGCTAGAACCAAGACTCCGCCTAAAAGACCTATTGCTATCAAGAAGTTTAAGCAGTCCAAAGATGGAGATGGAGTTTCCCCGACTGCTATCCGCGAGATCATGTTGCTTAGAGAGATTTCCCATGAGAACGTCGTGAAGCTTGTGAATGTCCACATCAATTTTGCAGACATGTCTCTGTATCTTGCCTTTGATTATGCCGAGTACGATCTCTATGAAATCATCAGGCACCACAGAGACAAAGTCGGCCATTCGTTAAACACATACACAGTTAAGTCTTTGCTCTGGCAGCTTCTCAACGGATTGAACTATCTTCACAGTAATTGGATTATACACAGAGATTTGAAACCGTCGAATATCTTGGTTATGGGTGATGCAGAAGAGCACGGAATAGTGAAAATAGCTGATTTCGGGCTCGCAAGGATATATCAAGCTCCGTTGAAACCACTATCGGATAACGGAGTTGTGGTCACAATCTGGTACCGAGCACCAGAGCTGCTTCTTGGTTCGAAGCACTACACGAGCGCTGTTGATATGTGGGCAGTTGGGTGTATATTCGCGGAGTTACTAACTCTTAAACCGTTGTTTCAAGGAGCAGAAGCGAAATCGTCTCAAAACCCTTTCCAGTTAGATCAACTTGACAAGATATTCAAGATCTTAGGCCACCCGACGATGGATAAATGGCCAACACTAGTTAACCTTCCACACTGGCAAAATGATGTTCAACACATTCAAGCTCACAAATACGACAGTGTGGGTCTCCACAACGTGGTTCACCTGAATCAGAAAAGTCCTGCGTATGATCTGTTATCCAAAATGCTGGAATATGATCCTCTAAAGCGGATCACGGCTTCACAAGCACTAGAACACGAGTATTTCCGAATGGATCCTCTCCCAGGACGGAACGCATTTGTAGCCAGCCAACCGATGGAGAAGAATGTGAATTACCCAACTCGTCCAGTAGATACAAACACCGATTTCGAAGGCACGACAAGCATCAATCCGCCTCAAGCAGTAGCAGCAGGAAACGTAGCAGGGAACATGGCAGGAGCTCATGGAATGGGCAGTAGATCGATGCCAAGACCAATGGTTGCACATAACATGCAGAGGATGCAGCAATCTCAAGGCATGATGGCTTATAATTTCCCGGCACAGGCAGGGCTTAACCCGAGTGTTCCGCTGCAGCAGCAGCGCGGGATGGCTCAACCGCACCAGCAGCAACAGCTAAGAAGGAAAGATCCCGGAATGGGTATGTCAGGTTACGCACCTCCTAACAAATCCAGACGCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007346 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016592 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0070013 GO:0071704 GO:0097472 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

470

Amino Acids

52.8

Weight (kDa)

9.22

Isoelectric Point (pI)

42.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	25 - 333	1.2e-65	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	28 - 232	7.8e-32	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63610
fragaria_vesca	FvH4_1g25340 FvH4_1g25340 FvH4_1g25350
malus_domestica	MD00G1110700.v1.1 MD15G1137900.v1.1
prunus_persica	Prupe.4G280700_v2.0.a1
pyrus_communis	pycom1146g00040
rosa_chinensis	RchiOBHm_Chr2g0123381 RchiOBHm_Chr2g0123391
rosa_laevigata	RLG00000018746
rosa_multiflora	Rmu_sc0004330.1_g000003 Rmu_sc0024478.1_g000001 Rmu_sc0041165.1_g000001 Rmu_ssc0000345.1_g000001
rosa_roxburghii	Rroxscaffold_2G00120740 Rroxscaffold_2G00120750
rosa_rugosa	Rorug02G0244900 Rorug02G0244900 Rorug02G0245000
rosa_samantha	Rh2AG303700 Rh2BG311800 Rh2CG290300 Rh2CG290400 Rh2DG327800 Rh2DG327900
rosa_wichuraiana	Rw2G024310 Rw2G024320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1260
Acc65I	GGTACC	1 cut(s)	600
AccB1I	GGYRCC	2 cut(s)	348, 600
AccB7I	CCANNNNNTGG	2 cut(s)	889, 1048
AccII	CGCG	3 cut(s)	216, 680, 1314
AciI	CCGC	8 cut(s)	140, 214, 680, 961, 1124, 1298, 1314, 1328
AclWI	GGATC	6 cut(s)	18, 944, 971, 1001, 1014, 1352
AcoI	YGGCCR	2 cut(s)	367, 803
AcyI	GRCGYC	1 cut(s)	1405
AdeI	CACNNNGTG	1 cut(s)	889
AfaI	GTAC	3 cut(s)	74, 326, 602
AfeI	AGCGCT	1 cut(s)	646
AfiI	CCNNNNNNNGG	6 cut(s)	793, 889, 1016, 1048, 1273, 1367
AflIII	ACRYGT	1 cut(s)	291
AgsI	TTSAA	7 cut(s)	427, 466, 562, 710, 772, 845, 854
AhlI	ACTAGT	2 cut(s)	44, 811
AjnI	CCWGG	1 cut(s)	1015
AloI	GAACNNNNNNTCC	2 cut(s)	121, 153
AluBI	AGCT	9 cut(s)	33, 262, 412, 524, 554, 616, 857, 1172, 1345
AluI	AGCT	9 cut(s)	33, 262, 412, 524, 554, 616, 857, 1172, 1345
Alw21I	GWGCWC	3 cut(s)	507, 610, 1174
Alw26I	GTCTC	4 cut(s)	300, 351, 735, 884
AlwI	GGATC	6 cut(s)	18, 944, 971, 1001, 1014, 1352
Ama87I	CYCGRG	1 cut(s)	1288
Aor51HI	AGCGCT	1 cut(s)	646
AoxI	GGCC	3 cut(s)	367, 781, 803
Asp718I	GGTACC	1 cut(s)	600
AspLEI	GCGC	2 cut(s)	647, 1314
AsuC2I	CCSGG	2 cut(s)	1268, 1362
AsuHPI	GGTGA	3 cut(s)	107, 503, 887
AsuII	TTCGAA	2 cut(s)	629, 1101
AvaI	CYCGRG	1 cut(s)	1288
BalI	TGGCCA	1 cut(s)	805
BamHI	GGATCC	1 cut(s)	1006
BanI	GGYRCC	2 cut(s)	348, 600
BanII	GRGCYC	2 cut(s)	537, 1174
BauI	CACGAG	2 cut(s)	640, 989
Bbv12I	GWGCWC	3 cut(s)	507, 610, 1174
BccI	CCATC	7 cut(s)	2, 179, 185, 787, 1042, 1246, 1312
BceAI	ACGGC	1 cut(s)	984
BciT130I	CCWGG	1 cut(s)	1017
BcnI	CCSGG	2 cut(s)	1268, 1362
BcoDI	GTCTC	4 cut(s)	300, 351, 735, 884
BcuI	ACTAGT	2 cut(s)	44, 811
BfaI	CTAG	4 cut(s)	45, 126, 812, 983
BfmI	CTRYAG	1 cut(s)	1301
BfoI	RGCGCY	1 cut(s)	648
BglII	AGATCT	1 cut(s)	774
Bme1390I	CCNGG	3 cut(s)	1017, 1268, 1362
BmeT110I	CYCGRG	1 cut(s)	1288
BmiI	GGNNCC	3 cut(s)	350, 602, 1008
BmrFI	CCNGG	3 cut(s)	1017, 1268, 1362
BmsI	GCATC	4 cut(s)	484, 1125, 1185, 1221
Bpu14I	TTCGAA	2 cut(s)	629, 1101
BpuEI	CTTGAG	2 cut(s)	1113, 1227
BpuMI	CCSGG	2 cut(s)	1268, 1362
Bsa29I	ATCGAT	1 cut(s)	1193
BsaHI	GRCGYC	1 cut(s)	1405
BsaI	GGTCTC	1 cut(s)	884
BsaJI	CCNNGG	1 cut(s)	1015
BsaXI	ACNNNNNCTCC	7 cut(s)	34, 121, 151, 180, 210, 573, 603
Bsc4I	CCNNNNNNNGG	6 cut(s)	793, 889, 1016, 1048, 1273, 1367
Bse1I	ACTGG	4 cut(s)	18, 745, 833, 1079
BseBI	CCWGG	1 cut(s)	1017
BseCI	ATCGAT	1 cut(s)	1193
BseDI	CCNNGG	1 cut(s)	1015
BseGI	GGATG	2 cut(s)	1236, 1323
BseLI	CCNNNNNNNGG	6 cut(s)	793, 889, 1016, 1048, 1273, 1367
BseNI	ACTGG	4 cut(s)	18, 745, 833, 1079
Bsh1236I	CGCG	3 cut(s)	216, 680, 1314
BshFI	GGCC	3 cut(s)	369, 783, 805
BshNI	GGYRCC	2 cut(s)	348, 600
BshVI	ATCGAT	1 cut(s)	1193
BsiHKAI	GWGCWC	3 cut(s)	507, 610, 1174
BsiHKCI	CYCGRG	1 cut(s)	1288
BsiSI	CCGG	2 cut(s)	1268, 1362
BslI	CCNNNNNNNGG	6 cut(s)	793, 889, 1016, 1048, 1273, 1367
BsmAI	GTCTC	4 cut(s)	300, 351, 735, 884
BsmBI	CGTCTC	1 cut(s)	735
BsnI	GGCC	3 cut(s)	369, 783, 805
Bso31I	GGTCTC	1 cut(s)	884
BsoBI	CYCGRG	1 cut(s)	1288
Bsp119I	TTCGAA	2 cut(s)	629, 1101
Bsp1286I	GDGCHC	4 cut(s)	507, 537, 610, 1174
BspACI	CCGC	8 cut(s)	140, 214, 680, 961, 1124, 1298, 1314, 1328
BspANI	GGCC	3 cut(s)	369, 783, 805
BspDI	ATCGAT	1 cut(s)	1193
BspFNI	CGCG	3 cut(s)	216, 680, 1314
BspLI	GGNNCC	3 cut(s)	350, 602, 1008
BspMAI	CTGCAG	1 cut(s)	1305
BspPI	GGATC	6 cut(s)	18, 944, 971, 1001, 1014, 1352
BspQI	GCTCTTC	1 cut(s)	495
BspT104I	TTCGAA	2 cut(s)	629, 1101
BspT107I	GGYRCC	2 cut(s)	348, 600
BspTNI	GGTCTC	1 cut(s)	884
BsrI	ACTGG	4 cut(s)	18, 745, 833, 1079
BssECI	CCNNGG	1 cut(s)	1015
BssNI	GRCGYC	1 cut(s)	1405
BssSI	CACGAG	2 cut(s)	640, 989
Bst2BI	CACGAG	2 cut(s)	640, 989
Bst2UI	CCWGG	1 cut(s)	1017
Bst4CI	ACNGT	6 cut(s)	72, 391, 440, 471, 702, 872
Bst6I	CTCTTC	1 cut(s)	495
BstACI	GRCGYC	1 cut(s)	1405
BstAPI	GCANNNNNTGC	1 cut(s)	1231
BstBI	TTCGAA	2 cut(s)	629, 1101
BstC8I	GCNNGC	2 cut(s)	537, 1039
BstDEI	CTNAG	3 cut(s)	230, 778, 1346
BstENI	CCTNNNNNAGG	1 cut(s)	1014
BstF5I	GGATG	2 cut(s)	1236, 1323
BstFNI	CGCG	3 cut(s)	216, 680, 1314
BstH2I	RGCGCY	1 cut(s)	648
BstHHI	GCGC	2 cut(s)	647, 1314
BstMAI	GTCTC	4 cut(s)	300, 351, 735, 884
BstNI	CCWGG	1 cut(s)	1017
BstNSI	RCATGY	2 cut(s)	295, 1225
BstSCI	CCNGG	3 cut(s)	1015, 1266, 1360
BstSFI	CTRYAG	1 cut(s)	1301
BstUI	CGCG	3 cut(s)	216, 680, 1314
BstX2I	RGATCY	4 cut(s)	23, 774, 1006, 1357
BstXI	CCANNNNNNTGG	1 cut(s)	940
BstYI	RGATCY	4 cut(s)	23, 774, 1006, 1357
Bsu15I	ATCGAT	1 cut(s)	1193
BsuRI	GGCC	3 cut(s)	369, 783, 805
BsuTUI	ATCGAT	1 cut(s)	1193
BtsCI	GGATG	2 cut(s)	1236, 1323
BtsIMutI	CAGTG	2 cut(s)	826, 877
Cac8I	GCNNGC	2 cut(s)	537, 1039
CfoI	GCGC	2 cut(s)	647, 1314
ClaI	ATCGAT	1 cut(s)	1193
Csp6I	GTAC	3 cut(s)	73, 325, 601
CviAII	CATG	7 cut(s)	223, 245, 292, 1162, 1175, 1222, 1249
CviQI	GTAC	3 cut(s)	73, 325, 601
DdeI	CTNAG	3 cut(s)	230, 778, 1346
DraIII	CACNNNGTG	1 cut(s)	889
EaeI	YGGCCR	2 cut(s)	367, 803
Eam1104I	CTCTTC	1 cut(s)	495
EarI	CTCTTC	1 cut(s)	495
EciI	GGCGGA	2 cut(s)	129, 1113
Ecl136II	GAGCTC	1 cut(s)	1172
Eco24I	GRGCYC	2 cut(s)	537, 1174
Eco31I	GGTCTC	1 cut(s)	884
Eco47III	AGCGCT	1 cut(s)	646
Eco53kI	GAGCTC	1 cut(s)	1172
Eco88I	CYCGRG	1 cut(s)	1288
EcoICRI	GAGCTC	1 cut(s)	1172
EcoNI	CCTNNNNNAGG	1 cut(s)	1014
EcoRII	CCWGG	1 cut(s)	1015
EcoT38I	GRGCYC	2 cut(s)	537, 1174
Esp3I	CGTCTC	1 cut(s)	735
FaeI	CATG	7 cut(s)	226, 248, 295, 1165, 1178, 1225, 1252
FatI	CATG	7 cut(s)	222, 244, 291, 1161, 1174, 1221, 1248
FauI	CCCGC	1 cut(s)	1307
FokI	GGATG	2 cut(s)	1243, 1330
FriOI	GRGCYC	2 cut(s)	537, 1174
FspBI	CTAG	4 cut(s)	45, 126, 812, 983
GlaI	GCGC	2 cut(s)	646, 1313
HaeII	RGCGCY	1 cut(s)	648
HaeIII	GGCC	3 cut(s)	369, 783, 805
HapII	CCGG	2 cut(s)	1268, 1362
HhaI	GCGC	2 cut(s)	647, 1314
Hin1I	GRCGYC	1 cut(s)	1405
Hin1II	CATG	7 cut(s)	226, 248, 295, 1165, 1178, 1225, 1252
Hin6I	GCGC	2 cut(s)	645, 1312
HinP1I	GCGC	2 cut(s)	645, 1312
HincII	GTYRAC	1 cut(s)	817
HindII	GTYRAC	1 cut(s)	817
HindIII	AAGCTT	1 cut(s)	260
HinfI	GANTC	2 cut(s)	136, 901
HpaI	GTTAAC	1 cut(s)	817
HpaII	CCGG	2 cut(s)	1268, 1362
HphI	GGTGA	3 cut(s)	107, 503, 887
Hpy166II	GTNNAC	3 cut(s)	274, 817, 895
Hpy188I	TCNGA	3 cut(s)	574, 906, 1001
Hpy188III	TCNNGA	4 cut(s)	163, 256, 772, 1401
Hpy8I	GTNNAC	3 cut(s)	274, 817, 895
Hpy99I	CGWCG	3 cut(s)	257, 475, 793
HpyAV	CCTTC	4 cut(s)	92, 830, 1097, 1344
HpyCH4III	ACNGT	6 cut(s)	72, 391, 440, 471, 702, 872
HpyCH4IV	ACGT	3 cut(s)	252, 888, 1149
HpyCH4V	TGCA	7 cut(s)	67, 287, 497, 1214, 1225, 1234, 1303
HpyF3I	CTNAG	3 cut(s)	230, 778, 1346
HpySE526I	ACGT	3 cut(s)	252, 888, 1149
Hsp92I	GRCGYC	1 cut(s)	1405
Hsp92II	CATG	7 cut(s)	226, 248, 295, 1165, 1178, 1225, 1252
HspAI	GCGC	2 cut(s)	645, 1312
KpnI	GGTACC	1 cut(s)	604
KspAI	GTTAAC	1 cut(s)	817
LguI	GCTCTTC	1 cut(s)	495
LmnI	GCTCC	3 cut(s)	559, 713, 1169
LweI	GCATC	4 cut(s)	484, 1125, 1185, 1221
MaeI	CTAG	4 cut(s)	45, 126, 812, 983
MaeII	ACGT	3 cut(s)	252, 888, 1149
MaeIII	GTNAC	3 cut(s)	589, 684, 1379
MboII	GAAGA	3 cut(s)	425, 512, 1066
MflI	RGATCY	4 cut(s)	23, 774, 1006, 1357
MhlI	GDGCHC	4 cut(s)	507, 537, 610, 1174
MlsI	TGGCCA	1 cut(s)	805
MluCI	AATT	4 cut(s)	280, 442, 1063, 1261
MluNI	TGGCCA	1 cut(s)	805
MlyI	GAGTC	1 cut(s)	130
MmeI	TCCRAC	1 cut(s)	51
MnlI	CCTC	5 cut(s)	963, 1020, 1137, 1221, 1398
Mox20I	TGGCCA	1 cut(s)	805
MscI	TGGCCA	1 cut(s)	805
MseI	TTAA	6 cut(s)	171, 377, 393, 696, 816, 1284
Msp20I	TGGCCA	1 cut(s)	805
MspA1I	CMGCKG	1 cut(s)	1300
MspI	CCGG	2 cut(s)	1268, 1362
MspR9I	CCNGG	3 cut(s)	1017, 1268, 1362
MvaI	CCWGG	1 cut(s)	1017
MvnI	CGCG	3 cut(s)	216, 680, 1314
NciI	CCSGG	2 cut(s)	1268, 1362
NlaIII	CATG	7 cut(s)	226, 248, 295, 1165, 1178, 1225, 1252
NlaIV	GGNNCC	3 cut(s)	350, 602, 1008
NmeAIII	GCCGAG	1 cut(s)	346
NmuCI	GTSAC	1 cut(s)	589
NspI	RCATGY	2 cut(s)	295, 1225
NspV	TTCGAA	2 cut(s)	629, 1101
PciI	ACATGT	1 cut(s)	291
PciSI	GCTCTTC	1 cut(s)	495
PfeI	GAWTC	1 cut(s)	901
PflFI	GACNNNGTC	1 cut(s)	362
PflMI	CCANNNNNTGG	2 cut(s)	889, 1048
PfoI	TCCNGGA	1 cut(s)	1360
PleI	GAGTC	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	130
PscI	ACATGT	1 cut(s)	291
PsiI	TTATAA	1 cut(s)	1260
Psp124BI	GAGCTC	1 cut(s)	1174
Psp6I	CCWGG	1 cut(s)	1015
PspGI	CCWGG	1 cut(s)	1015
PspN4I	GGNNCC	3 cut(s)	350, 602, 1008
PstI	CTGCAG	1 cut(s)	1305
PsuI	RGATCY	4 cut(s)	23, 774, 1006, 1357
PsyI	GACNNNGTC	1 cut(s)	362
RsaI	GTAC	3 cut(s)	74, 326, 602
RsaNI	GTAC	3 cut(s)	73, 325, 601
SacI	GAGCTC	1 cut(s)	1174
SapI	GCTCTTC	1 cut(s)	495
SaqAI	TTAA	6 cut(s)	171, 377, 393, 696, 816, 1284
SchI	GAGTC	1 cut(s)	130
ScrFI	CCNGG	3 cut(s)	1017, 1268, 1362
SduI	GDGCHC	4 cut(s)	507, 537, 610, 1174
SfaNI	GCATC	4 cut(s)	484, 1125, 1185, 1221
SfcI	CTRYAG	1 cut(s)	1301
SfuI	TTCGAA	2 cut(s)	629, 1101
SmlI	CTYRAG	2 cut(s)	1128, 1242
SmoI	CTYRAG	2 cut(s)	1128, 1242
SpeI	ACTAGT	2 cut(s)	44, 811
Sse9I	AATT	4 cut(s)	280, 442, 1063, 1261
SsiI	CCGC	8 cut(s)	140, 214, 680, 961, 1124, 1298, 1314, 1328
SspMI	CTAG	4 cut(s)	45, 126, 812, 983
SstI	GAGCTC	1 cut(s)	1174
StyD4I	CCNGG	3 cut(s)	1015, 1266, 1360
TaaI	ACNGT	6 cut(s)	72, 391, 440, 471, 702, 872
TaiI	ACGT	3 cut(s)	255, 891, 1152
TaqI	TCGA	4 cut(s)	473, 629, 1101, 1193
TasI	AATT	4 cut(s)	280, 442, 1063, 1261
TatI	WGTACW	1 cut(s)	72
TfiI	GAWTC	1 cut(s)	901
Tru1I	TTAA	6 cut(s)	171, 377, 393, 696, 816, 1284
Tru9I	TTAA	6 cut(s)	171, 377, 393, 696, 816, 1284
TscAI	CASTG	2 cut(s)	833, 877
TseFI	GTSAC	1 cut(s)	589
Tsp45I	GTSAC	1 cut(s)	589
TspDTI	ATGAA	1 cut(s)	351
TspGWI	ACGGA	5 cut(s)	435, 522, 546, 594, 1036
TspRI	CASTG	2 cut(s)	833, 877
Tth111I	GACNNNGTC	1 cut(s)	362
Van91I	CCANNNNNTGG	2 cut(s)	889, 1048
XagI	CCTNNNNNAGG	1 cut(s)	1014
XceI	RCATGY	2 cut(s)	295, 1225
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1045
XspI	CTAG	4 cut(s)	45, 126, 812, 983

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.