Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005816

Physical Location & Seq

Genomic Coordinates Forward (+)

35187653 .. 35198751

Gene Structure 11099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018746

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3840 bp

ATGGGCGACGGCAACCGAGGCCTCTCGGCTAATTCTAATTCAAATTCAAACCACGGCGGTAGCAACAAGCCGGAGTGGCTCCAGCAGTATGATCTGATCGGCAAGATCGGCGAGGGAACCTACGGCCTCGTCTTCCTCGCCAGGACCAAGTCCCCTAATAACCGCGGCAAATCCATTGCCATCAAGAAATTCAAGCAGTCCAAGGACGGCGACGGCGTCTCCCCCACCGCCATCCGGGAAATCATGTTACTTCGGGAAATTTCCCACGAGAATGTGGTGAAGCTTGTGAATGTTCACATCAATCACTCCGACATGTCGCTCTATCTGGCTTTTGATTACGCTGAGCATGACCTTTATGAAATCATTAGACATCATAGAGACAAAGTTAATCATGCGATCAATCAGTATACTGTTAAGTCCTTGCTATGGCAGCTGCTCAATGGTCTAAATTATCTTCATAGCAATTGGATAATTCATCGTGATCTAAAGCCATCTAATATCTTGGTTATGGGTGACGCAGAGGAACAAGGAGTGGTCAAAATTGCCGATTTCGGACTTGCAAGAATATATCAGGCTCCCTTGAAGTCGTTGTCTGAAAATGGGGTTGTGGTAACCATATGGTATCGTGCACCAGAATTGCTCCTTGGGGCAAAGCACTACACAAGTGCTGTCGATATGTGGGCTGTTGGATGCATTTTTGCTGAGCTTTTGACTTTGAAGCCATTATTTCAAGGGGCAGAAGTGAAAGCTACACCAAATCCTTTCCAGCTTGATCAACTTGACAAGATTTTCAAAGTTCTAGGCCATCCTACACTAGAAAAGTGGCCGACACTTTCAAATCTTCCACATTGGCAACAAGACCTACAACACATTCAAGGGCACAAGTATGACAATACTGCACTTTACAGTGTAGTTCACCTCTCTCCAAAAAGTCCTGCATATGACCTCCTATCTAAGATGCTTGAATATGATCCCCGAAAGCGTATAACAGCAGCACAAGCGTTAGAACACGAATACTTTCGTATAGAACCTCTACCAGGACGCAATGCATTGGTAGGCAGTCAAGGAGAAAAGGCAGTGAATTACCTTACTCGTCCGGTTGACACAACTACAGACTTTGAAGGGACAACCAGCCTTCAACCTTCACAACCGGTATCATCTGGAAATGCAGGAAGCATGTCAGGCAGGGATGGGTGGTGGACTGAATCCTGGTGGTATCCCCATGCAGCGTGGTGTTGGTCAGGCCCATCACCAACAACAGTTGAGAAGGAAAGATCCAGGAATGGGGATGACTGGATACCCTCCACAGCAGAAATCAAGACGTTTCTGAGTTTCATTGCACCTGGTATTTTTTTTTTTTTTGGCCGTGGATCTCTGGAAACTCCTGAAGGACGTTCTGGGGAGTCATACATAGGGCATGAGTTCAACCATATAAAATATCTGAACTTATGGCATTTCTCAATCTATGGACCCGGTTTCCCCCCTGTTGACTTGATTGATGTGATCTTATTTATACCGTTTGATGTCTTCCAAACTTCAAAGATTGAGGACTGGGACAAAATGTTTTCCAGACACTGCAAGGTAGCCCGGGCTACTGTTCATCTATCATCCGAAATGAGTCTCTTTCCTTTTTTAATTTACGCCCTTTTCTTCTCTTACTGGGCAACTGTTTCACGTAGTGAAGTGTTCATAGTCCGAGTCCAAAACGACCTGAAACCGCCACAACACTCCATAAACCATGAATGGTACGCTTCCACCCTCAACACTTTGTCTGCAACAAACGACTCCCTCCATTACGTCTACAACACTGTCTTTCATGGCTTCTCCGCCGACCTCACCACACAACAAGCCAACCAGCTACGCCAGCGTCCAGAAATAGTAAGCGTTTTCCGTGACAGACTCCTCAAACATCATACAACTAGGTCTCCTGCATTCCTCGGCCTCAACACAAACGAAACCAACGACCAGGGCATTCTGAAACTGTCTGATTCCGGTGCCAACGTCATCATCGGTGTCATCGACAGCGGCATATGGCCAGAACACCGCAGCTTCCACGACCATGGGCTCGGACCAATCCCTTCACATTGGAAAGGCCGCTGCCTACCGGGAGATTCCGAAAATGCCGCCACCTTTTGCAACAGAAAGCTCATCGGAGCAAGATACTTCACCCGAGGCATCAACAACGAAACTGAAGTTTCTTCCGCTAGAGACGACGTTGGCCATGGAACACACACAGCGTCAACTATGGCTGGACGACACGTCGGAAACGCATCCTTCCTCGGCTTCGCCAAAGGTGTTGCATCGGGAATGGCCCCAAAAGCACGACTTGCAGTCTACAGAGTGTGTGGGAAGATAGGGTGTGCGCAATCCGACGTACTCGCCGGTATCGAACAGGCCGTACAGGACGGCGTCGACGTCATCTCTATGTCCCTCGGCGGCGACTCCTCCTTGCCGTACGATAAGGACCCGATTGCAATCGCCACGTTCGCCGCAACCGAGAAAGGCATTGTCTGTTCGGCCTCTGGAGGCAATGCGGGCCCAGATCACGGCACCGTGACTAACGTCGCACCGTGGATCACCACCGTCGGTGCAAGCACGATTGACCGTGACTTTCGCGCCGATTTAGTGCTTGGTAATGGCCGCGTCATCACTGGTTGTTCTCTCTACCATGGCACTTGGCCGGAGAAGACATCCGCACCGTTGGTTTACACCGGTGGGATATGCATGGAGCTTACCAACAAGAAACGCATCCCGGACTACGTCCGAGGAAACATCGTGGTTTGCAATTATATCAGCACGGTTTTCCCTGAAGATTTCGACAGGATCAGGAACGCTGGTGCGGTCGGAATGGTCGGGATTGAACAAAACGATCTATTGGCAACTCCATATTCTATTCCTGCACTGGCGATCAGACGATCAGCCCGTGACGAACTTCTCCGGTATATGAACGTCACCAAGAATGCACGTGCAGCAATGCGCTTCCGTGGGACCGTTACAGGGGTGAAGCCCGCACCGGTGGTAGCCGACTTTTCGTCGCGAGGACCCAATCTGTTGTCTCCGTTTGTTGTGAAGCCCGATGTCATAGCGCCGGGTGTCAACATCTTAGCGGCTTGGCCGCAACTCGATGATTTGTCCGATTTCCGTATAATGTCAGGGACGTCCATGTCTTGCCCCCACGTGTCGGGAATAGCTGCATTGTTGAGAGGGGCCCGCCCTAGCTGGTCTCCCGCCATGATCAAATCGGCTATGATGACCACGGCTTACACAAAGTATCGCGACGGAGGGCCGCTGCTAGATGAGTTGCACCGCCACCAGGTGGTGTGGGGGATTGGTGCCGGACACGTGGATCCTCAGAAGGCGCTTGATCCTGGTTTGGTGTATGATCTTAAGGCGGATGACTATATCAACTTTTTGTGTGCGTCGAATTATAGCGACGAACAAGTTAGGGCAATCACACAACAGACTACTGCATGCAAGGGCAGGAAAGGCTTCACTCAACCCTGGGATTTCAACTACCCAGCTATATCGCCGGTTTTTGATGTGACGCGGTGGCCAAAATCGGAGGATGTAATTGTTCGGAAAAGTGTTACAAATGTTGGTGAAGGTTCCTCCACTTACATTGTACGTAGTGTCATCAATCCATTTGGGGTCAAGGTTCGTGTTATTCCTCCCATTTTGAAGTTTTCGAAGAAAGGCGAAATTCAGAGTTATGTTATCAAGTTTACGGCTAATAAGAATGTGGGAGTGCCGCGACATGGGAATGTGGCGTTTGGCCAGCTGATTTGGACAGATGGGAAACATAAGGTTTCTTCACCGATTACGGTGACATATATGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007346 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016592 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0070013 GO:0071704 GO:0097472 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

1280

Amino Acids

141.49

Weight (kDa)

8.46

Isoelectric Point (pI)

35.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	30 - 340	3.5e-66	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	33 - 239	3.2e-33	Protein tyrosine and serine/threonine kinase
Inhibitor_I9	PF05922	562 - 637	4.2e-14	Peptidase inhibitor I9
Peptidase_S8	PF00082	665 - 1091	4e-47	Subtilase family
fn3_6	PF17766	1169 - 1275	4.3e-22	Fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0005816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63610
fragaria_vesca	FvH4_1g25340 FvH4_1g25340 FvH4_1g25350
malus_domestica	MD00G1110700.v1.1 MD15G1137900.v1.1
prunus_persica	Prupe.4G280700_v2.0.a1
pyrus_communis	pycom1146g00040
rosa_chinensis	RchiOBHm_Chr2g0123381 RchiOBHm_Chr2g0123391
rosa_laevigata	RLG00000018746
rosa_multiflora	Rmu_sc0004330.1_g000003 Rmu_sc0024478.1_g000001 Rmu_sc0041165.1_g000001 Rmu_ssc0000345.1_g000001
rosa_roxburghii	Rroxscaffold_2G00120740 Rroxscaffold_2G00120750
rosa_rugosa	Rorug02G0244900 Rorug02G0244900 Rorug02G0245000
rosa_samantha	Rh2AG303700 Rh2BG311800 Rh2CG290300 Rh2CG290400 Rh2DG327800 Rh2DG327900
rosa_wichuraiana	Rw2G024310 Rw2G024320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	3163
AatII	GACGTC	2 cut(s)	2418, 3161
Acc16I	TGCGCA	1 cut(s)	2364
AccB1I	GGYRCC	3 cut(s)	1994, 2549, 3332
AccB7I	CCANNNNNTGG	1 cut(s)	3316
AccI	GTMKAC	4 cut(s)	407, 1800, 2334, 2412
AccII	CGCG	7 cut(s)	165, 2616, 2643, 3037, 3276, 3547, 3751
AclWI	GGATC	8 cut(s)	965, 1269, 1378, 2582, 2831, 3341, 3354, 3359
AcoI	YGGCCR	9 cut(s)	824, 1363, 2033, 2218, 2638, 2678, 3113, 3551, 3772
AcsI	RAATTY	4 cut(s)	43, 188, 258, 3699
AcuI	CTGAAG	3 cut(s)	1407, 2211, 2829
AcvI	CACGTG	3 cut(s)	2966, 3178, 3343
AcyI	GRCGYC	4 cut(s)	216, 2409, 2415, 3158
AdeI	CACNNNGTG	2 cut(s)	1679, 3316
AfaI	GTAC	5 cut(s)	1748, 2376, 2400, 2456, 3624
AflII	CTTAAG	1 cut(s)	3386
AflIII	ACRYGT	4 cut(s)	312, 2257, 3177, 3340
AgeI	ACCGGT	3 cut(s)	1150, 2711, 3013
AhdI	GACNNNNNGTC	3 cut(s)	2258, 2330, 3031
AjiI	CACGTC	1 cut(s)	2260
AjnI	CCWGG	9 cut(s)	140, 1036, 1208, 1277, 1342, 1965, 3312, 3367, 3500
AjuI	GAANNNNNNNTTGG	2 cut(s)	627, 659
Alw21I	GWGCWC	1 cut(s)	631
Alw26I	GTCTC	7 cut(s)	223, 372, 1625, 1929, 2202, 3060, 3228
Alw44I	GTGCAC	1 cut(s)	627
AlwI	GGATC	8 cut(s)	965, 1269, 1378, 2582, 2831, 3341, 3354, 3359
AlwNI	CAGNNNCTG	1 cut(s)	1575
Ama87I	CYCGRG	2 cut(s)	1587, 2169
ApaI	GGGCCC	2 cut(s)	2540, 3211
ApaLI	GTGCAC	1 cut(s)	627
ApeKI	GCWGC	9 cut(s)	430, 433, 992, 1226, 2046, 2097, 2969, 3191, 3289
ApoI	RAATTY	4 cut(s)	43, 188, 258, 3699
AsiGI	ACCGGT	3 cut(s)	1150, 2711, 3013
Asp700I	GAANNNNTTC	2 cut(s)	1017, 3488
AspLEI	GCGC	5 cut(s)	2365, 2618, 2979, 3088, 3361
AsuC2I	CCSGG	7 cut(s)	236, 1473, 1588, 1589, 2106, 2753, 3090
AsuII	TTCGAA	1 cut(s)	3686
AvaI	CYCGRG	2 cut(s)	1587, 2169
AvaII	GGWCC	6 cut(s)	144, 1469, 2069, 2464, 2988, 3041
BaeGI	GKGCMC	4 cut(s)	631, 882, 2540, 3211
BalI	TGGCCA	4 cut(s)	2035, 2220, 3553, 3774
BamHI	GGATCC	1 cut(s)	3346
BanI	GGYRCC	3 cut(s)	1994, 2549, 3332
BanII	GRGCYC	3 cut(s)	2067, 2540, 3211
BauI	CACGAG	1 cut(s)	266
BbrPI	CACGTG	3 cut(s)	2966, 3178, 3343
BbsI	GAAGAC	3 cut(s)	124, 1519, 2693
Bbv12I	GWGCWC	1 cut(s)	631
BbvI	GCAGC	9 cut(s)	420, 442, 1004, 1238, 2058, 2084, 2981, 3178, 3276
BccI	CCATC	7 cut(s)	188, 239, 499, 813, 1184, 1255, 3785
BciT130I	CCWGG	9 cut(s)	142, 1038, 1210, 1279, 1344, 1967, 3314, 3369, 3502
BciVI	GTATCC	2 cut(s)	1227, 1290
BclI	TGATCA	2 cut(s)	772, 3234
BcnI	CCSGG	7 cut(s)	236, 1473, 1588, 1589, 2106, 2753, 3090
BcoDI	GTCTC	7 cut(s)	223, 372, 1625, 1929, 2202, 3060, 3228
BfaI	CTAG	6 cut(s)	800, 815, 1920, 2205, 3216, 3293
BfmI	CTRYAG	2 cut(s)	1110, 2335
BfoI	RGCGCY	2 cut(s)	3089, 3362
BfrI	CTTAAG	1 cut(s)	3386
BfuI	GTATCC	2 cut(s)	1227, 1290
BglI	GCCNNNNNGGC	1 cut(s)	76
BlpI	GCTNAGC	2 cut(s)	342, 702
Bme18I	GGWCC	6 cut(s)	144, 1469, 2069, 2464, 2988, 3041
BmeRI	GACNNNNNGTC	3 cut(s)	2258, 2330, 3031
BmeT110I	CYCGRG	2 cut(s)	1587, 2169
BmgBI	CACGTC	1 cut(s)	2260
BmrI	ACTGGG	2 cut(s)	1561, 1669
BmsI	GCATC	6 cut(s)	680, 948, 2184, 2279, 2309, 2757
BmuI	ACTGGG	2 cut(s)	1561, 1669
BoxI	GACNNNNGTC	1 cut(s)	2561
BpiI	GAAGAC	3 cut(s)	124, 1519, 2693
BpmI	CTGGAG	2 cut(s)	65, 2544
Bpu1102I	GCTNAGC	2 cut(s)	342, 702
Bpu14I	TTCGAA	1 cut(s)	3686
BpuMI	CCSGG	7 cut(s)	236, 1473, 1588, 1589, 2106, 2753, 3090
BsaAI	YACGTR	5 cut(s)	1676, 2966, 3178, 3343, 3626
BsaBI	GATNNNNATC	1 cut(s)	2474
BsaHI	GRCGYC	4 cut(s)	216, 2409, 2415, 3158
BsaI	GGTCTC	2 cut(s)	1929, 3228
BsaWI	WCCGGW	6 cut(s)	1096, 1150, 1991, 2711, 2937, 3013
BsaXI	ACNNNNNCTCC	4 cut(s)	203, 233, 1909, 1939
Bse118I	RCCGGY	5 cut(s)	1150, 2381, 2711, 3013, 3529
Bse1I	ACTGG	5 cut(s)	1298, 1556, 1664, 2656, 2907
Bse3DI	GCAATG	5 cut(s)	174, 1051, 1335, 2536, 2979
Bse8I	GATNNNNATC	1 cut(s)	2474
BseBI	CCWGG	9 cut(s)	142, 1038, 1210, 1279, 1344, 1967, 3314, 3369, 3502
BseJI	GATNNNNATC	1 cut(s)	2474
BseMI	GCAATG	5 cut(s)	174, 1051, 1335, 2536, 2979
BseMII	CTCAG	4 cut(s)	333, 693, 1319, 3365
BseNI	ACTGG	5 cut(s)	1298, 1556, 1664, 2656, 2907
BseRI	GAGGAG	2 cut(s)	1892, 2434
BseSI	GKGCMC	4 cut(s)	631, 882, 2540, 3211
BseXI	GCAGC	9 cut(s)	420, 442, 1004, 1238, 2058, 2084, 2981, 3178, 3276
BseYI	CCCAGC	1 cut(s)	3517
BsgI	GTGCAG	3 cut(s)	882, 2883, 2988
Bsh1236I	CGCG	7 cut(s)	165, 2616, 2643, 3037, 3276, 3547, 3751
Bsh1285I	CGRYCG	1 cut(s)	2844
BshNI	GGYRCC	3 cut(s)	1994, 2549, 3332
BshTI	ACCGGT	3 cut(s)	1150, 2711, 3013
BsiEI	CGRYCG	1 cut(s)	2844
BsiHKAI	GWGCWC	1 cut(s)	631
BsiHKCI	CYCGRG	2 cut(s)	1587, 2169
BsiWI	CGTACG	1 cut(s)	2454
BslFI	GGGAC	6 cut(s)	136, 1138, 1568, 2413, 3001, 3169
BsmAI	GTCTC	7 cut(s)	223, 372, 1625, 1929, 2202, 3060, 3228
BsmBI	CGTCTC	2 cut(s)	223, 2202
BsmFI	GGGAC	6 cut(s)	136, 1138, 1568, 2413, 3001, 3169
BsmI	GAATGC	3 cut(s)	1931, 1971, 2965
Bso31I	GGTCTC	2 cut(s)	1929, 3228
BsoBI	CYCGRG	2 cut(s)	1587, 2169
Bsp119I	TTCGAA	1 cut(s)	3686
Bsp120I	GGGCCC	2 cut(s)	2536, 3207
Bsp1286I	GDGCHC	5 cut(s)	631, 882, 2067, 2540, 3211
Bsp1720I	GCTNAGC	2 cut(s)	342, 702
Bsp19I	CCATGG	3 cut(s)	2059, 2221, 2668
Bsp68I	TCGCGA	2 cut(s)	3037, 3276
BspCNI	CTCAG	4 cut(s)	334, 694, 1320, 3364
BspFNI	CGCG	7 cut(s)	165, 2616, 2643, 3037, 3276, 3547, 3751
BspPI	GGATC	8 cut(s)	965, 1269, 1378, 2582, 2831, 3341, 3354, 3359
BspT104I	TTCGAA	1 cut(s)	3686
BspT107I	GGYRCC	3 cut(s)	1994, 2549, 3332
BspTI	CTTAAG	1 cut(s)	3386
BspTNI	GGTCTC	2 cut(s)	1929, 3228
BsrDI	GCAATG	5 cut(s)	174, 1051, 1335, 2536, 2979
BsrFI	RCCGGY	5 cut(s)	1150, 2381, 2711, 3013, 3529
BsrI	ACTGG	5 cut(s)	1298, 1556, 1664, 2656, 2907
BssAI	RCCGGY	5 cut(s)	1150, 2381, 2711, 3013, 3529
BssNAI	GTATAC	1 cut(s)	408
BssNI	GRCGYC	4 cut(s)	216, 2409, 2415, 3158
BssSI	CACGAG	1 cut(s)	266
BssT1I	CCWWGG	5 cut(s)	201, 643, 2059, 2221, 2668
Bst1107I	GTATAC	1 cut(s)	408
Bst2BI	CACGAG	1 cut(s)	266
Bst2UI	CCWGG	9 cut(s)	142, 1038, 1210, 1279, 1344, 1967, 3314, 3369, 3502
BstACI	GRCGYC	4 cut(s)	216, 2409, 2415, 3158
BstAFI	CTTAAG	1 cut(s)	3386
BstAPI	GCANNNNNTGC	1 cut(s)	2327
BstBAI	YACGTR	5 cut(s)	1676, 2966, 3178, 3343, 3626
BstBI	TTCGAA	1 cut(s)	3686
BstC8I	GCNNGC	7 cut(s)	1865, 2536, 2593, 3009, 3211, 3472, 3776
BstDEI	CTNAG	6 cut(s)	342, 702, 954, 1328, 3103, 3351
BstDSI	CCRYGG	9 cut(s)	52, 163, 1366, 2059, 2221, 2570, 2668, 2983, 3255
BstEII	GGTNACC	1 cut(s)	610
BstENI	CCTNNNNNAGG	1 cut(s)	1035
BstFNI	CGCG	7 cut(s)	165, 2616, 2643, 3037, 3276, 3547, 3751
BstH2I	RGCGCY	2 cut(s)	3089, 3362
BstHHI	GCGC	5 cut(s)	2365, 2618, 2979, 3088, 3361
BstMAI	GTCTC	7 cut(s)	223, 372, 1625, 1929, 2202, 3060, 3228
BstMCI	CGRYCG	1 cut(s)	2844
BstNI	CCWGG	9 cut(s)	142, 1038, 1210, 1279, 1344, 1967, 3314, 3369, 3502
BstNSI	RCATGY	3 cut(s)	316, 1180, 3474
BstPAI	GACNNNNGTC	1 cut(s)	2561
BstPI	GGTNACC	1 cut(s)	610
BstSFI	CTRYAG	2 cut(s)	1110, 2335
BstSLI	GKGCMC	4 cut(s)	631, 882, 2540, 3211
BstSNI	TACGTA	1 cut(s)	3626
BstUI	CGCG	7 cut(s)	165, 2616, 2643, 3037, 3276, 3547, 3751
BstV1I	GCAGC	9 cut(s)	420, 442, 1004, 1238, 2058, 2084, 2981, 3178, 3276
BstV2I	GAAGAC	3 cut(s)	124, 1519, 2693
BstX2I	RGATCY	3 cut(s)	1274, 1370, 3346
BstXI	CCANNNNNNTGG	1 cut(s)	2060
BstYI	RGATCY	3 cut(s)	1274, 1370, 3346
BstZ17I	GTATAC	1 cut(s)	408
BsuI	GTATCC	2 cut(s)	1227, 1290
BtgI	CCRYGG	9 cut(s)	52, 163, 1366, 2059, 2221, 2570, 2668, 2983, 3255
BtrI	CACGTC	1 cut(s)	2260
BtsI	GCAGTG	2 cut(s)	1083, 1573
BtsIMutI	CAGTG	6 cut(s)	913, 1083, 1573, 1806, 2649, 2900
BtuMI	TCGCGA	2 cut(s)	3037, 3276
Cac8I	GCNNGC	7 cut(s)	1865, 2536, 2593, 3009, 3211, 3472, 3776
CaiI	CAGNNNCTG	1 cut(s)	1575
CfoI	GCGC	5 cut(s)	2365, 2618, 2979, 3088, 3361
Cfr10I	RCCGGY	5 cut(s)	1150, 2381, 2711, 3013, 3529
Cfr42I	CCGCGG	1 cut(s)	166
Cfr9I	CCCGGG	1 cut(s)	1587
CseI	GACGC	9 cut(s)	205, 524, 1050, 1856, 2226, 2398, 2632, 3408, 3553
CsiI	ACCWGGT	2 cut(s)	1342, 3312
Csp6I	GTAC	5 cut(s)	1747, 2375, 2399, 2455, 3623
CspAI	ACCGGT	3 cut(s)	1150, 2711, 3013
CspCI	CAANNNNNGTGG	2 cut(s)	3601, 3636
CviQI	GTAC	5 cut(s)	1747, 2375, 2399, 2455, 3623
DdeI	CTNAG	6 cut(s)	342, 702, 954, 1328, 3103, 3351
DraIII	CACNNNGTG	2 cut(s)	1679, 3316
DrdI	GACNNNNNNGTC	1 cut(s)	3163
DriI	GACNNNNNGTC	3 cut(s)	2258, 2330, 3031
DseDI	GACNNNNNNGTC	1 cut(s)	3163
EaeI	YGGCCR	9 cut(s)	824, 1363, 2033, 2218, 2638, 2678, 3113, 3551, 3772
Eam1105I	GACNNNNNGTC	3 cut(s)	2258, 2330, 3031
EciI	GGCGGA	2 cut(s)	1816, 3407
Eco105I	TACGTA	1 cut(s)	3626
Eco130I	CCWWGG	5 cut(s)	201, 643, 2059, 2221, 2668
Eco147I	AGGCCT	1 cut(s)	21
Eco24I	GRGCYC	3 cut(s)	2067, 2540, 3211
Eco31I	GGTCTC	2 cut(s)	1929, 3228
Eco47I	GGWCC	6 cut(s)	144, 1469, 2069, 2464, 2988, 3041
Eco57I	CTGAAG	3 cut(s)	1407, 2211, 2829
Eco72I	CACGTG	3 cut(s)	2966, 3178, 3343
Eco88I	CYCGRG	2 cut(s)	1587, 2169
Eco91I	GGTNACC	1 cut(s)	610
EcoNI	CCTNNNNNAGG	1 cut(s)	1035
EcoO109I	RGGNCCY	3 cut(s)	2464, 3041, 3207
EcoO65I	GGTNACC	1 cut(s)	610
EcoRII	CCWGG	9 cut(s)	140, 1036, 1208, 1277, 1342, 1965, 3312, 3367, 3500
EcoT14I	CCWWGG	5 cut(s)	201, 643, 2059, 2221, 2668
EcoT22I	ATGCAT	3 cut(s)	695, 1051, 2726
EcoT38I	GRGCYC	3 cut(s)	2067, 2540, 3211
ErhI	CCWWGG	5 cut(s)	201, 643, 2059, 2221, 2668
Esp3I	CGTCTC	2 cut(s)	223, 2202
FalI	AAGNNNNNCTT	2 cut(s)	2310, 2342
FaqI	GGGAC	6 cut(s)	136, 1138, 1568, 2413, 3001, 3169
FauI	CCCGC	4 cut(s)	2527, 3016, 3218, 3235
FauNDI	CATATG	3 cut(s)	617, 940, 2030
FbaI	TGATCA	2 cut(s)	772, 3234
FblI	GTMKAC	4 cut(s)	407, 1800, 2334, 2412
FriOI	GRGCYC	3 cut(s)	2067, 2540, 3211
FspBI	CTAG	6 cut(s)	800, 815, 1920, 2205, 3216, 3293
FspI	TGCGCA	1 cut(s)	2364
GlaI	GCGC	5 cut(s)	2364, 2617, 2978, 3087, 3360
GsaI	CCCAGC	1 cut(s)	3521
GsuI	CTGGAG	2 cut(s)	65, 2544
HaeII	RGCGCY	2 cut(s)	3089, 3362
HgaI	GACGC	9 cut(s)	205, 524, 1050, 1856, 2226, 2398, 2632, 3408, 3553
HhaI	GCGC	5 cut(s)	2365, 2618, 2979, 3088, 3361
Hin1I	GRCGYC	4 cut(s)	216, 2409, 2415, 3158
Hin6I	GCGC	5 cut(s)	2363, 2616, 2977, 3086, 3359
HinP1I	GCGC	5 cut(s)	2363, 2616, 2977, 3086, 3359
HincII	GTYRAC	5 cut(s)	1102, 1489, 2241, 2413, 3097
HindII	GTYRAC	5 cut(s)	1102, 1489, 2241, 2413, 3097
HindIII	AAGCTT	1 cut(s)	281
HinfI	GANTC	9 cut(s)	1205, 1403, 1618, 1698, 1784, 1899, 1988, 2111, 2441
HpyAV	CCTTC	9 cut(s)	1115, 1145, 1152, 1261, 1382, 2088, 2284, 3349, 3596
HpyF3I	CTNAG	6 cut(s)	342, 702, 954, 1328, 3103, 3351
Hsp92I	GRCGYC	4 cut(s)	216, 2409, 2415, 3158
HspAI	GCGC	5 cut(s)	2363, 2616, 2977, 3086, 3359
Ksp22I	TGATCA	2 cut(s)	772, 3234
KspI	CCGCGG	1 cut(s)	166
LmnI	GCTCC	5 cut(s)	84, 580, 645, 2153, 2728
Lsp1109I	GCAGC	9 cut(s)	420, 442, 1004, 1238, 2058, 2084, 2981, 3178, 3276
LweI	GCATC	6 cut(s)	680, 948, 2184, 2279, 2309, 2757
MabI	ACCWGGT	2 cut(s)	1342, 3312
MaeI	CTAG	6 cut(s)	800, 815, 1920, 2205, 3216, 3293
MfeI	CAATTG	1 cut(s)	463
MflI	RGATCY	3 cut(s)	1274, 1370, 3346
MhlI	GDGCHC	5 cut(s)	631, 882, 2067, 2540, 3211
MlsI	TGGCCA	4 cut(s)	2035, 2220, 3553, 3774
MluNI	TGGCCA	4 cut(s)	2035, 2220, 3553, 3774
MlyI	GAGTC	6 cut(s)	1412, 1627, 1707, 1778, 1893, 2435
MmeI	TCCRAC	5 cut(s)	333, 667, 2242, 2394, 2824
Mox20I	TGGCCA	4 cut(s)	2035, 2220, 3553, 3774
Mph1103I	ATGCAT	3 cut(s)	695, 1051, 2726
MroXI	GAANNNNTTC	2 cut(s)	1017, 3488
MscI	TGGCCA	4 cut(s)	2035, 2220, 3553, 3774
MseI	TTAA	4 cut(s)	387, 414, 1634, 3387
MslI	CAYNNNNRTG	5 cut(s)	270, 885, 2058, 2423, 3759
Msp20I	TGGCCA	4 cut(s)	2035, 2220, 3553, 3774
MspA1I	CMGCKG	6 cut(s)	165, 433, 2025, 2097, 3289, 3778
MspCI	CTTAAG	1 cut(s)	3386
MunI	CAATTG	1 cut(s)	463
Mva1269I	GAATGC	3 cut(s)	1931, 1971, 2965
MvaI	CCWGG	9 cut(s)	142, 1038, 1210, 1279, 1344, 1967, 3314, 3369, 3502
MvnI	CGCG	7 cut(s)	165, 2616, 2643, 3037, 3276, 3547, 3751
NciI	CCSGG	7 cut(s)	236, 1473, 1588, 1589, 2106, 2753, 3090
NcoI	CCATGG	3 cut(s)	2059, 2221, 2668
NdeI	CATATG	3 cut(s)	617, 940, 2030
NmeAIII	GCCGAG	4 cut(s)	5, 1917, 2259, 2412
NmuCI	GTSAC	8 cut(s)	512, 1892, 2554, 2606, 2924, 2950, 3541, 3823
NruI	TCGCGA	2 cut(s)	3037, 3276
NsbI	TGCGCA	1 cut(s)	2364
NsiI	ATGCAT	3 cut(s)	695, 1051, 2726
NspI	RCATGY	3 cut(s)	316, 1180, 3474
NspV	TTCGAA	1 cut(s)	3686
PaeI	GCATGC	1 cut(s)	3474
PasI	CCCWGGG	1 cut(s)	3501
PceI	AGGCCT	1 cut(s)	21
PciI	ACATGT	1 cut(s)	312
PcsI	WCGNNNNNNNCGW	8 cut(s)	213, 1959, 2016, 2385, 2394, 2412, 2493, 2920
PctI	GAATGC	3 cut(s)	1931, 1971, 2965
PdmI	GAANNNNTTC	2 cut(s)	1017, 3488
PfeI	GAWTC	3 cut(s)	1205, 1988, 2111
Pfl23II	CGTACG	1 cut(s)	2454
PflFI	GACNNNGTC	4 cut(s)	148, 215, 2408, 2759
PflMI	CCANNNNNTGG	1 cut(s)	3316
PfoI	TCCNGGA	3 cut(s)	234, 1277, 2751
PinAI	ACCGGT	3 cut(s)	1150, 2711, 3013
PleI	GAGTC	6 cut(s)	1411, 1626, 1706, 1778, 1893, 2435
PmaCI	CACGTG	3 cut(s)	2966, 3178, 3343
PmlI	CACGTG	3 cut(s)	2966, 3178, 3343
PpsI	GAGTC	6 cut(s)	1411, 1626, 1706, 1778, 1893, 2435
Ppu21I	YACGTR	5 cut(s)	1676, 2966, 3178, 3343, 3626
PpuMI	RGGWCCY	2 cut(s)	2464, 3041
PscI	ACATGT	1 cut(s)	312
PshAI	GACNNNNGTC	1 cut(s)	2561
Psp5II	RGGWCCY	2 cut(s)	2464, 3041
Psp6I	CCWGG	9 cut(s)	140, 1036, 1208, 1277, 1342, 1965, 3312, 3367, 3500
PspCI	CACGTG	3 cut(s)	2966, 3178, 3343
PspEI	GGTNACC	1 cut(s)	610
PspFI	CCCAGC	1 cut(s)	3517
PspGI	CCWGG	9 cut(s)	140, 1036, 1208, 1277, 1342, 1965, 3312, 3367, 3500
PspLI	CGTACG	1 cut(s)	2454
PspOMI	GGGCCC	2 cut(s)	2536, 3207
PspPPI	RGGWCCY	2 cut(s)	2464, 3041
PsrI	GAACNNNNNNTAC	2 cut(s)	2382, 2414
PstNI	CAGNNNCTG	1 cut(s)	1575
PsuI	RGATCY	3 cut(s)	1274, 1370, 3346
PsyI	GACNNNGTC	4 cut(s)	148, 215, 2408, 2759
PvuII	CAGCTG	2 cut(s)	433, 3778
RruI	TCGCGA	2 cut(s)	3037, 3276
RsaI	GTAC	5 cut(s)	1748, 2376, 2400, 2456, 3624
RsaNI	GTAC	5 cut(s)	1747, 2375, 2399, 2455, 3623
RseI	CAYNNNNRTG	5 cut(s)	270, 885, 2058, 2423, 3759
SacII	CCGCGG	1 cut(s)	166
SalI	GTCGAC	1 cut(s)	2411
SaqAI	TTAA	4 cut(s)	387, 414, 1634, 3387
SchI	GAGTC	6 cut(s)	1412, 1627, 1707, 1778, 1893, 2435
SduI	GDGCHC	5 cut(s)	631, 882, 2067, 2540, 3211
SexAI	ACCWGGT	2 cut(s)	1342, 3312
SfaNI	GCATC	6 cut(s)	680, 948, 2184, 2279, 2309, 2757
SfcI	CTRYAG	2 cut(s)	1110, 2335
Sfr303I	CCGCGG	1 cut(s)	166
SfuI	TTCGAA	1 cut(s)	3686
SgrAI	CRCCGGYG	2 cut(s)	2711, 3013
SgrBI	CCGCGG	1 cut(s)	166
SgrDI	CGTCGACG	1 cut(s)	2411
SinI	GGWCC	6 cut(s)	144, 1469, 2069, 2464, 2988, 3041
SmaI	CCCGGG	1 cut(s)	1589
SmiMI	CAYNNNNRTG	5 cut(s)	270, 885, 2058, 2423, 3759
SmlI	CTYRAG	1 cut(s)	3386
SmoI	CTYRAG	1 cut(s)	3386
SnaBI	TACGTA	1 cut(s)	3626
SphI	GCATGC	1 cut(s)	3474
SrfI	GCCCGGGC	1 cut(s)	1589
SseBI	AGGCCT	1 cut(s)	21
SspMI	CTAG	6 cut(s)	800, 815, 1920, 2205, 3216, 3293
StuI	AGGCCT	1 cut(s)	21
StyI	CCWWGG	5 cut(s)	201, 643, 2059, 2221, 2668
TaqI	TCGA	8 cut(s)	672, 2019, 2388, 2412, 2817, 3123, 3422, 3686
TfiI	GAWTC	3 cut(s)	1205, 1988, 2111
Tru1I	TTAA	4 cut(s)	387, 414, 1634, 3387
Tru9I	TTAA	4 cut(s)	387, 414, 1634, 3387
TscAI	CASTG	6 cut(s)	913, 1083, 1580, 1813, 2656, 2907
TseFI	GTSAC	8 cut(s)	512, 1892, 2554, 2606, 2924, 2950, 3541, 3823
TseI	GCWGC	9 cut(s)	430, 433, 992, 1226, 2046, 2097, 2969, 3191, 3289
Tsp45I	GTSAC	8 cut(s)	512, 1892, 2554, 2606, 2924, 2950, 3541, 3823
TspDTI	ATGAA	9 cut(s)	372, 446, 464, 1324, 1589, 1678, 1755, 1805, 2960
TspGWI	ACGGA	5 cut(s)	1880, 2972, 3048, 3131, 3294
TspMI	CCCGGG	1 cut(s)	1587
TspRI	CASTG	6 cut(s)	913, 1083, 1580, 1813, 2656, 2907
Tth111I	GACNNNGTC	4 cut(s)	148, 215, 2408, 2759
Van91I	CCANNNNNTGG	1 cut(s)	3316
Vha464I	CTTAAG	1 cut(s)	3386
VneI	GTGCAC	1 cut(s)	627
VpaK11BI	GGWCC	6 cut(s)	144, 1469, 2069, 2464, 2988, 3041
XagI	CCTNNNNNAGG	1 cut(s)	1035
XapI	RAATTY	4 cut(s)	43, 188, 258, 3699
XceI	RCATGY	3 cut(s)	316, 1180, 3474
XmaI	CCCGGG	1 cut(s)	1587
XmiI	GTMKAC	4 cut(s)	407, 1800, 2334, 2412
XmnI	GAANNNNTTC	2 cut(s)	1017, 3488
XspI	CTAG	6 cut(s)	800, 815, 1920, 2205, 3216, 3293
ZraI	GACGTC	2 cut(s)	2416, 3159
Zsp2I	ATGCAT	3 cut(s)	695, 1051, 2726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.