Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00001146

Orthogroup ID

OG0005816

Physical Location & Seq

Genomic Coordinates Forward (+)

53995 .. 55238

Gene Structure 1244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom1146g00040.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGGTGACGGCAGCGCAAGCGGCAACAGAGGCCATAACAACAACAACCACAGCCACGGCCACAACCACGGCGGTGGTCATGGTAACAAGCCGGAGTGGCTGCAACAGTACGATCTGATGGGGAAGATCGGGGAAGGCACCTACGGCCTGGTGTTTCTTGCAAGGACCAAGTCTCCTCCTTCCAACCGCGGAAAATCCATCGCCATCAAGAAATTCAAGCAGTCCAAGGACGGTGATGGCGTCTCCCCCACCGCCATCCGTGAAATCATGTTGCTGCGGGAAATATCGCACGAGAATGTGGTGAAGCTCGTGAATGTTCATATCAACCACACAGACATGTCCCTCTACCTGGCTTTCGATTACGCAGAACATGACCTTTATGAAATCATTAGACACCATAGAGACAAAGTTAATCACGCAATCAATTATTACACTATTAAGACATTGCTCTGGCAGCTGCTTAATGGACTCAATTATCTCCATAGTAACTGGATCATTCATCGTGATTTAAAGCCATCTAATATCTTGGTTATGGGCGACAGAGAGGAGCAAGGAATTGTGAAAATTGCGGATTTTGGACTTGCAAGGATATATCAGGCTCCCTTAAAGTCGTTGTCTGAAAATGGGGTATGGAGACATGTTTGTATCATTTTGTTCTTTAGATGCCATCTTTCTATGAGCGTATGTGGTGTTCTCAACTTCATATGTATGCATATGGATTACTCAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007346 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016592 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0070013 GO:0071704 GO:0097472 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

244

Amino Acids

27.69

Weight (kDa)

8.98

Isoelectric Point (pI)

38.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63610
fragaria_vesca	FvH4_1g25340 FvH4_1g25340 FvH4_1g25350
malus_domestica	MD00G1110700.v1.1 MD15G1137900.v1.1
prunus_persica	Prupe.4G280700_v2.0.a1
pyrus_communis	pycom1146g00040
rosa_chinensis	RchiOBHm_Chr2g0123381 RchiOBHm_Chr2g0123391
rosa_laevigata	RLG00000018746
rosa_multiflora	Rmu_sc0004330.1_g000003 Rmu_sc0024478.1_g000001 Rmu_sc0041165.1_g000001 Rmu_ssc0000345.1_g000001
rosa_roxburghii	Rroxscaffold_2G00120740 Rroxscaffold_2G00120750
rosa_rugosa	Rorug02G0244900 Rorug02G0244900 Rorug02G0245000
rosa_samantha	Rh2AG303700 Rh2BG311800 Rh2CG290300 Rh2CG290400 Rh2DG327800 Rh2DG327900
rosa_wichuraiana	Rw2G024310 Rw2G024320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	137
AccII	CGCG	1 cut(s)	189
AciI	CCGC	7 cut(s)	21, 72, 187, 189, 252, 277, 569
AclWI	GGATC	1 cut(s)	500
AcoI	YGGCCR	1 cut(s)	58
AcsI	RAATTY	1 cut(s)	212
AcyI	GRCGYC	1 cut(s)	240
AfaI	GTAC	1 cut(s)	110
AfiI	CCNNNNNNNGG	1 cut(s)	349
AflIII	ACRYGT	2 cut(s)	336, 637
AgsI	TTSAA	1 cut(s)	217
AjnI	CCWGG	2 cut(s)	147, 348
AleI	CACNNNNGTG	1 cut(s)	72
AluBI	AGCT	2 cut(s)	307, 457
AluI	AGCT	2 cut(s)	307, 457
Alw26I	GTCTC	4 cut(s)	177, 247, 396, 628
AlwI	GGATC	1 cut(s)	500
AoxI	GGCC	3 cut(s)	31, 58, 145
ApeKI	GCWGC	5 cut(s)	12, 100, 274, 454, 457
ApoI	RAATTY	1 cut(s)	212
AspLEI	GCGC	1 cut(s)	17
AspS9I	GGNCC	1 cut(s)	165
AsuHPI	GGTGA	3 cut(s)	17, 245, 313
AvaII	GGWCC	1 cut(s)	165
BanI	GGYRCC	1 cut(s)	137
BauI	CACGAG	2 cut(s)	290, 308
BbvI	GCAGC	5 cut(s)	24, 87, 261, 444, 466
BccI	CCATC	7 cut(s)	112, 206, 212, 230, 263, 523, 675
BceAI	ACGGC	4 cut(s)	25, 73, 85, 160
BciT130I	CCWGG	2 cut(s)	149, 350
BcoDI	GTCTC	4 cut(s)	177, 247, 396, 628
BglI	GCCNNNNNGGC	1 cut(s)	97
BisI	GCNGC	6 cut(s)	13, 22, 101, 275, 455, 458
BlsI	GCNGC	6 cut(s)	14, 23, 102, 276, 456, 459
Bme1390I	CCNGG	2 cut(s)	149, 350
Bme18I	GGWCC	1 cut(s)	165
BmgT120I	GGNCC	1 cut(s)	165
BmiI	GGNNCC	2 cut(s)	139, 600
BmrFI	CCNGG	2 cut(s)	149, 350
BmsI	GCATC	1 cut(s)	653
BpuEI	CTTGAG	1 cut(s)	709
BsaHI	GRCGYC	1 cut(s)	240
BsaJI	CCNNGG	4 cut(s)	55, 67, 187, 225
BsaXI	ACNNNNNCTCC	2 cut(s)	157, 187
Bsc4I	CCNNNNNNNGG	1 cut(s)	349
Bse1I	ACTGG	1 cut(s)	494
Bse3DI	GCAATG	1 cut(s)	443
BseBI	CCWGG	2 cut(s)	149, 350
BseDI	CCNNGG	4 cut(s)	55, 67, 187, 225
BseGI	GGATG	1 cut(s)	255
BseLI	CCNNNNNNNGG	1 cut(s)	349
BseMI	GCAATG	1 cut(s)	443
BseNI	ACTGG	1 cut(s)	494
BseRI	GAGGAG	2 cut(s)	165, 560
BseXI	GCAGC	5 cut(s)	24, 87, 261, 444, 466
Bsh1236I	CGCG	1 cut(s)	189
BshFI	GGCC	3 cut(s)	33, 60, 147
BshNI	GGYRCC	1 cut(s)	137
BsiSI	CCGG	1 cut(s)	92
BslFI	GGGAC	1 cut(s)	325
BslI	CCNNNNNNNGG	1 cut(s)	349
BsmAI	GTCTC	4 cut(s)	177, 247, 396, 628
BsmBI	CGTCTC	1 cut(s)	247
BsmFI	GGGAC	1 cut(s)	325
BsnI	GGCC	3 cut(s)	33, 60, 147
Bsp143I	GATC	3 cut(s)	112, 126, 492
BspACI	CCGC	7 cut(s)	21, 72, 187, 189, 252, 277, 569
BspANI	GGCC	3 cut(s)	33, 60, 147
BspFNI	CGCG	1 cut(s)	189
BspLI	GGNNCC	2 cut(s)	139, 600
BspPI	GGATC	1 cut(s)	500
BspT107I	GGYRCC	1 cut(s)	137
BsrDI	GCAATG	1 cut(s)	443
BsrI	ACTGG	1 cut(s)	494
BssECI	CCNNGG	4 cut(s)	55, 67, 187, 225
BssMI	GATC	3 cut(s)	112, 126, 492
BssNI	GRCGYC	1 cut(s)	240
BssSI	CACGAG	2 cut(s)	290, 308
BssT1I	CCWWGG	1 cut(s)	225
Bst2BI	CACGAG	2 cut(s)	290, 308
Bst2UI	CCWGG	2 cut(s)	149, 350
Bst4CI	ACNGT	2 cut(s)	108, 233
BstACI	GRCGYC	1 cut(s)	240
BstC8I	GCNNGC	1 cut(s)	19
BstDSI	CCRYGG	3 cut(s)	55, 67, 187
BstF5I	GGATG	1 cut(s)	255
BstFNI	CGCG	1 cut(s)	189
BstHHI	GCGC	1 cut(s)	17
BstKTI	GATC	3 cut(s)	115, 129, 495
BstMAI	GTCTC	4 cut(s)	177, 247, 396, 628
BstMBI	GATC	3 cut(s)	112, 126, 492
BstMWI	GCNNNNNNNGC	6 cut(s)	18, 21, 30, 97, 144, 454
BstNI	CCWGG	2 cut(s)	149, 350
BstNSI	RCATGY	2 cut(s)	340, 641
BstSCI	CCNGG	2 cut(s)	147, 348
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	5 cut(s)	24, 87, 261, 444, 466
BstXI	CCANNNNNNTGG	1 cut(s)	74
BsuRI	GGCC	3 cut(s)	33, 60, 147
BtgI	CCRYGG	3 cut(s)	55, 67, 187
BtgZI	GCGATG	1 cut(s)	184
BtsCI	GGATG	1 cut(s)	255
Cac8I	GCNNGC	1 cut(s)	19
CfoI	GCGC	1 cut(s)	17
Cfr13I	GGNCC	1 cut(s)	165
Cfr42I	CCGCGG	1 cut(s)	190
CseI	GACGC	1 cut(s)	229
Csp6I	GTAC	1 cut(s)	109
CviAII	CATG	5 cut(s)	80, 268, 337, 371, 638
CviQI	GTAC	1 cut(s)	109
DpnI	GATC	3 cut(s)	114, 128, 494
DpnII	GATC	3 cut(s)	112, 126, 492
DraI	TTTAAA	1 cut(s)	510
EaeI	YGGCCR	1 cut(s)	58
Eco130I	CCWWGG	1 cut(s)	225
Eco47I	GGWCC	1 cut(s)	165
EcoRII	CCWGG	2 cut(s)	147, 348
EcoT14I	CCWWGG	1 cut(s)	225
EcoT22I	ATGCAT	1 cut(s)	714
ErhI	CCWWGG	1 cut(s)	225
Esp3I	CGTCTC	1 cut(s)	247
FaeI	CATG	5 cut(s)	83, 271, 340, 374, 641
FaqI	GGGAC	1 cut(s)	325
FatI	CATG	5 cut(s)	79, 267, 336, 370, 637
FauI	CCCGC	1 cut(s)	270
FauNDI	CATATG	2 cut(s)	704, 714
Fnu4HI	GCNGC	6 cut(s)	13, 22, 101, 275, 455, 458
FokI	GGATG	1 cut(s)	242
Fsp4HI	GCNGC	6 cut(s)	13, 22, 101, 275, 455, 458
GlaI	GCGC	1 cut(s)	16
GluI	GCNGC	6 cut(s)	13, 22, 101, 275, 455, 458
HaeIII	GGCC	3 cut(s)	33, 60, 147
HapII	CCGG	1 cut(s)	92
HgaI	GACGC	1 cut(s)	229
HhaI	GCGC	1 cut(s)	17
Hin1I	GRCGYC	1 cut(s)	240
Hin1II	CATG	5 cut(s)	83, 271, 340, 374, 641
Hin6I	GCGC	1 cut(s)	15
HinP1I	GCGC	1 cut(s)	15
HinfI	GANTC	1 cut(s)	468
HpaII	CCGG	1 cut(s)	92
HphI	GGTGA	3 cut(s)	17, 245, 313
Hpy188I	TCNGA	2 cut(s)	117, 619
Hpy188III	TCNNGA	3 cut(s)	208, 310, 503
HpyAV	CCTTC	2 cut(s)	128, 189
HpyCH4III	ACNGT	2 cut(s)	108, 233
HpyCH4V	TGCA	4 cut(s)	103, 161, 584, 712
HpyF10VI	GCNNNNNNNGC	6 cut(s)	18, 21, 30, 97, 144, 454
Hsp92I	GRCGYC	1 cut(s)	240
Hsp92II	CATG	5 cut(s)	83, 271, 340, 374, 641
HspAI	GCGC	1 cut(s)	15
KspI	CCGCGG	1 cut(s)	190
Kzo9I	GATC	3 cut(s)	112, 126, 492
LmnI	GCTCC	2 cut(s)	547, 604
LpnPI	CCDG	8 cut(s)	105, 134, 161, 335, 362, 436, 475, 581
Lsp1109I	GCAGC	5 cut(s)	24, 87, 261, 444, 466
LweI	GCATC	1 cut(s)	653
MaeIII	GTNAC	3 cut(s)	5, 83, 485
MalI	GATC	3 cut(s)	114, 128, 494
MboI	GATC	3 cut(s)	112, 126, 492
MboII	GAAGA	1 cut(s)	136
MluCI	AATT	5 cut(s)	212, 424, 472, 555, 564
MlyI	GAGTC	1 cut(s)	462
MmeI	TCCRAC	1 cut(s)	207
MnlI	CCTC	4 cut(s)	23, 186, 353, 538
Mph1103I	ATGCAT	1 cut(s)	714
MseI	TTAA	5 cut(s)	411, 438, 462, 509, 605
MslI	CAYNNNNRTG	4 cut(s)	72, 294, 335, 707
MspA1I	CMGCKG	2 cut(s)	189, 457
MspI	CCGG	1 cut(s)	92
MspR9I	CCNGG	2 cut(s)	149, 350
MvaI	CCWGG	2 cut(s)	149, 350
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	6 cut(s)	18, 21, 30, 97, 144, 454
NdeI	CATATG	2 cut(s)	704, 714
NdeII	GATC	3 cut(s)	112, 126, 492
NlaIII	CATG	5 cut(s)	83, 271, 340, 374, 641
NlaIV	GGNNCC	2 cut(s)	139, 600
NmuCI	GTSAC	1 cut(s)	5
NsiI	ATGCAT	1 cut(s)	714
NspI	RCATGY	2 cut(s)	340, 641
OliI	CACNNNNGTG	1 cut(s)	72
PciI	ACATGT	2 cut(s)	336, 637
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PflFI	GACNNNGTC	1 cut(s)	169
PkrI	GCNGC	6 cut(s)	14, 23, 102, 276, 456, 459
PleI	GAGTC	1 cut(s)	462
PpsI	GAGTC	1 cut(s)	462
PscI	ACATGT	2 cut(s)	336, 637
Psp6I	CCWGG	2 cut(s)	147, 348
PspGI	CCWGG	2 cut(s)	147, 348
PspN4I	GGNNCC	2 cut(s)	139, 600
PspPI	GGNCC	1 cut(s)	165
PsrI	GAACNNNNNNTAC	2 cut(s)	675, 707
PsyI	GACNNNGTC	1 cut(s)	169
PvuII	CAGCTG	1 cut(s)	457
RsaI	GTAC	1 cut(s)	110
RsaNI	GTAC	1 cut(s)	109
RseI	CAYNNNNRTG	4 cut(s)	72, 294, 335, 707
SacII	CCGCGG	1 cut(s)	190
SaqAI	TTAA	5 cut(s)	411, 438, 462, 509, 605
SatI	GCNGC	6 cut(s)	13, 22, 101, 275, 455, 458
Sau3AI	GATC	3 cut(s)	112, 126, 492
Sau96I	GGNCC	1 cut(s)	165
SchI	GAGTC	1 cut(s)	462
ScrFI	CCNGG	2 cut(s)	149, 350
SetI	ASST	6 cut(s)	143, 309, 351, 378, 459, 731
SfaNI	GCATC	1 cut(s)	653
Sfr303I	CCGCGG	1 cut(s)	190
SgrBI	CCGCGG	1 cut(s)	190
SinI	GGWCC	1 cut(s)	165
SmiMI	CAYNNNNRTG	4 cut(s)	72, 294, 335, 707
SmlI	CTYRAG	1 cut(s)	724
SmoI	CTYRAG	1 cut(s)	724
Sse9I	AATT	5 cut(s)	212, 424, 472, 555, 564
SsiI	CCGC	7 cut(s)	21, 72, 187, 189, 252, 277, 569
StyD4I	CCNGG	2 cut(s)	147, 348
StyI	CCWWGG	1 cut(s)	225
TaaI	ACNGT	2 cut(s)	108, 233
TaqI	TCGA	1 cut(s)	357
TasI	AATT	5 cut(s)	212, 424, 472, 555, 564
TauI	GCSGC	1 cut(s)	24
Tru1I	TTAA	5 cut(s)	411, 438, 462, 509, 605
Tru9I	TTAA	5 cut(s)	411, 438, 462, 509, 605
TseFI	GTSAC	1 cut(s)	5
TseI	GCWGC	5 cut(s)	12, 100, 274, 454, 457
Tsp45I	GTSAC	1 cut(s)	5
TspDTI	ATGAA	4 cut(s)	308, 396, 488, 691
TspGWI	ACGGA	1 cut(s)	248
Tth111I	GACNNNGTC	1 cut(s)	169
VpaK11BI	GGWCC	1 cut(s)	165
XapI	RAATTY	1 cut(s)	212
XceI	RCATGY	2 cut(s)	340, 641
Zsp2I	ATGCAT	1 cut(s)	714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.