RchiOBHm_Chr2g0123381
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
36533143 .. 36540729
7587 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49568

Sequence Viewer

Length: 1428 bp
ATGGGCGACGGCAACCGAGGCCTCTCGGCTAATTCTAATTCTAATTCAAACCACGGCGGTAGCAACAAGCCGGAGTGGCTCCAGCAGTATGATCTGATCGGCAAGATCGGCGAGGGAACCTACGGCCTCGTCTTCCTCGCCAGGACCAAGACCCCTAACAACCGCGGCAAATCCATTGCCATCAAGAAATTCAAGCAGTCCAAGGACGGCGACGGCGTCTCCCCCACCGCCATCCGCGAAATCATGTTACTGCGGGAAATCTCCCACGATAATGTGGTGAAGCTTGTGAATGTTCACATCAATCACTCCGACATGTCGCTCTATCTGGCTTTTGATTACGCTGAGCATGACCTTTATGAAATCATTAGACATCATAGAGACAAAGTTAATCATGCGATCAATCAGTATACTGTTAAGTCCTTGCTATGGCAGCTGCTCAATGGACTAAATTATCTTCATAGCAATTGGATAATTCATCGTGATCTAAAGCCATCTAATATCTTGGTTATGGGTGACGGAGAGGAACAAGGAGTGGTCAAAATTGCCGATTTCGGACTTGCAAGAATATATCAGGCTCCCTTGAAGTCGTTGTCTGAAAACGGGGTTGTGGTAACCATATGGTATCGTGCACCAGAATTGCTCCTTGGGGCAAAGCACTACACAAGTGCTGTCGATATGTGGGCTGTTGGATGCATTTTTGCTGAGCTTTTAACTTTGAAGCCATTATTTCAAGGGGCAGAAGTGAAAGCTACACCAAATCCTTTCCAGCTTGATCAACTTGACAAGATTTTCAAAGTTCTAGGCCATCCTACGCTAGAAAAGTGGCCGACACTTTCAAATCTTCCACACTGGCAACAAGACCAACAACACATTCAAGGGCACAAGTATGACAATACTGCACTTTACAGTGTAGTTCACCTCTCTCCAAAAAGTCCTGCATATGACCTCCTATCTAAGATGCTCGAATATGATCCTCGAAAGCGTATAACAGCAGCACAAGCGTTAGAACACGAATACTTTCGTATAGAACCTCTACCAGGACGCAATGCATTGATGGCCAGTCAAGGAGAAAAGGCAGTGAATTACCTTACTCGTCCGGTTGACACAACTACAGACTTTGAAGGGACAACCAGCCTTCAACCTTCACAACCGGTATCGTCTGGAAATGCAGGAAGCATGTCAGGTGCTCATGTAGGGAACAGATCTATGCCCAGGCCGTTACTTAACATGCAAAGAATGCAGCCATCTCAGGGCTTGACTGCATATAATCTTGCAACACAGGCAGGGATGGGTGGTGGAATGAATCCTGGTGGTATCCCCATGCAGCGTGGTGTTGGTCAGGCCCATCACCAACAACAGTTGAGAAGGAAAGATCCAGGAATGGGGATGACTGGATACCCTCCACAGCAGAAATCTAGACGTTTCTGA

Protein Analysis

475

Amino Acids

52.97

Weight (kDa)

9.29

Isoelectric Point (pI)

37.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 30 - 340 3.8e-67 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 33 - 239 7.7e-34 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 407
AccII CGCG 2 cut(s) 165, 237
AciI CCGC 6 cut(s) 57, 163, 165, 228, 235, 253
AclWI GGATC 2 cut(s) 965, 1367
AcoI YGGCCR 2 cut(s) 824, 1056
AcsI RAATTY 1 cut(s) 188
AcyI GRCGYC 1 cut(s) 216
AfiI CCNNNNNNNGG 4 cut(s) 426, 1037, 1250, 1382
AflIII ACRYGT 1 cut(s) 312
AgeI ACCGGT 1 cut(s) 1150
AjnI CCWGG 5 cut(s) 140, 1036, 1211, 1306, 1375
AjuI GAANNNNNNNTTGG 4 cut(s) 627, 659, 855, 887
AluBI AGCT 5 cut(s) 283, 433, 706, 749, 769
AluI AGCT 5 cut(s) 283, 433, 706, 749, 769
Alw21I GWGCWC 2 cut(s) 631, 1189
Alw26I GTCTC 2 cut(s) 223, 372
Alw44I GTGCAC 1 cut(s) 627
AlwI GGATC 2 cut(s) 965, 1367
AoxI GGCC 7 cut(s) 19, 124, 802, 824, 1056, 1214, 1341
ApaLI GTGCAC 1 cut(s) 627
ApeKI GCWGC 5 cut(s) 430, 433, 992, 1240, 1324
ApoI RAATTY 1 cut(s) 188
AsiGI ACCGGT 1 cut(s) 1150
Asp700I GAANNNNTTC 1 cut(s) 1017
AspS9I GGNCC 2 cut(s) 144, 1342
AsuHPI GGTGA 4 cut(s) 289, 524, 908, 1340
AvaII GGWCC 1 cut(s) 144
BaeGI GKGCMC 2 cut(s) 631, 882
BalI TGGCCA 1 cut(s) 1058
BbsI GAAGAC 1 cut(s) 124
Bbv12I GWGCWC 2 cut(s) 631, 1189
BbvI GCAGC 5 cut(s) 420, 442, 1004, 1252, 1336
BccI CCATC 8 cut(s) 188, 239, 499, 813, 1048, 1252, 1282, 1353
BceAI ACGGC 6 cut(s) 25, 70, 139, 223, 229, 1201
BciT130I CCWGG 5 cut(s) 142, 1038, 1213, 1308, 1377
BciVI GTATCC 2 cut(s) 1325, 1388
BclI TGATCA 1 cut(s) 772
BcoDI GTCTC 2 cut(s) 223, 372
BfaI CTAG 3 cut(s) 800, 815, 1416
BfmI CTRYAG 1 cut(s) 1110
BfuI GTATCC 2 cut(s) 1325, 1388
BglI GCCNNNNNGGC 1 cut(s) 76
BglII AGATCT 1 cut(s) 1202
BisI GCNGC 6 cut(s) 166, 431, 434, 993, 1241, 1325
BlpI GCTNAGC 2 cut(s) 342, 702
BlsI GCNGC 6 cut(s) 167, 432, 435, 994, 1242, 1326
Bme1390I CCNGG 5 cut(s) 142, 1038, 1213, 1308, 1377
Bme18I GGWCC 1 cut(s) 144
BmgT120I GGNCC 2 cut(s) 144, 1342
BmiI GGNNCC 3 cut(s) 80, 118, 576
BmrFI CCNGG 5 cut(s) 142, 1038, 1213, 1308, 1377
BmsI GCATC 2 cut(s) 680, 948
BpiI GAAGAC 1 cut(s) 124
BpmI CTGGAG 1 cut(s) 65
Bpu1102I GCTNAGC 2 cut(s) 342, 702
BsaHI GRCGYC 1 cut(s) 216
BsaJI CCNNGG 6 cut(s) 16, 52, 163, 201, 643, 1211
BsaWI WCCGGW 2 cut(s) 1096, 1150
BsaXI ACNNNNNCTCC 2 cut(s) 203, 233
Bsc4I CCNNNNNNNGG 4 cut(s) 426, 1037, 1250, 1382
Bse118I RCCGGY 1 cut(s) 1150
Bse1I ACTGG 3 cut(s) 854, 1059, 1396
Bse3DI GCAATG 2 cut(s) 174, 1051
BseBI CCWGG 5 cut(s) 142, 1038, 1213, 1308, 1377
BseDI CCNNGG 6 cut(s) 16, 52, 163, 201, 643, 1211
BseGI GGATG 5 cut(s) 231, 695, 805, 1293, 1392
BseLI CCNNNNNNNGG 4 cut(s) 426, 1037, 1250, 1382
BseMI GCAATG 2 cut(s) 174, 1051
BseMII CTCAG 3 cut(s) 333, 693, 1262
BseNI ACTGG 3 cut(s) 854, 1059, 1396
BseSI GKGCMC 2 cut(s) 631, 882
BseXI GCAGC 5 cut(s) 420, 442, 1004, 1252, 1336
BsgI GTGCAG 1 cut(s) 882
Bsh1236I CGCG 2 cut(s) 165, 237
BshFI GGCC 7 cut(s) 21, 126, 804, 826, 1058, 1216, 1343
BshTI ACCGGT 1 cut(s) 1150
BsiHKAI GWGCWC 2 cut(s) 631, 1189
BsiSI CCGG 3 cut(s) 71, 1097, 1151
BslFI GGGAC 1 cut(s) 1138
BslI CCNNNNNNNGG 4 cut(s) 426, 1037, 1250, 1382
BsmAI GTCTC 2 cut(s) 223, 372
BsmBI CGTCTC 1 cut(s) 223
BsmFI GGGAC 1 cut(s) 1138
BsmI GAATGC 1 cut(s) 1242
BsnI GGCC 7 cut(s) 21, 126, 804, 826, 1058, 1216, 1343
Bsp1286I GDGCHC 3 cut(s) 631, 882, 1189
Bsp143I GATC 9 cut(s) 91, 96, 105, 396, 481, 772, 970, 1202, 1372
Bsp1720I GCTNAGC 2 cut(s) 342, 702
BspACI CCGC 6 cut(s) 57, 163, 165, 228, 235, 253
BspANI GGCC 7 cut(s) 21, 126, 804, 826, 1058, 1216, 1343
BspCNI CTCAG 3 cut(s) 334, 694, 1261
BspFNI CGCG 2 cut(s) 165, 237
BspLI GGNNCC 3 cut(s) 80, 118, 576
BspPI GGATC 2 cut(s) 965, 1367
BsrDI GCAATG 2 cut(s) 174, 1051
BsrFI RCCGGY 1 cut(s) 1150
BsrI ACTGG 3 cut(s) 854, 1059, 1396
BssAI RCCGGY 1 cut(s) 1150
BssECI CCNNGG 6 cut(s) 16, 52, 163, 201, 643, 1211
BssMI GATC 9 cut(s) 91, 96, 105, 396, 481, 772, 970, 1202, 1372
BssNAI GTATAC 1 cut(s) 408
BssNI GRCGYC 1 cut(s) 216
BssT1I CCWWGG 2 cut(s) 201, 643
Bst1107I GTATAC 1 cut(s) 408
Bst2UI CCWGG 5 cut(s) 142, 1038, 1213, 1308, 1377
Bst4CI ACNGT 3 cut(s) 412, 908, 1359
BstACI GRCGYC 1 cut(s) 216
BstAPI GCANNNNNTGC 1 cut(s) 1237
BstDEI CTNAG 4 cut(s) 342, 702, 954, 1248
BstDSI CCRYGG 2 cut(s) 52, 163
BstEII GGTNACC 1 cut(s) 610
BstENI CCTNNNNNAGG 1 cut(s) 1035
BstF5I GGATG 5 cut(s) 231, 695, 805, 1293, 1392
BstFNI CGCG 2 cut(s) 165, 237
BstKTI GATC 9 cut(s) 94, 99, 108, 399, 484, 775, 973, 1205, 1375
BstMAI GTCTC 2 cut(s) 223, 372
BstMBI GATC 9 cut(s) 91, 96, 105, 396, 481, 772, 970, 1202, 1372
BstMWI GCNNNNNNNGC 8 cut(s) 18, 76, 108, 430, 998, 1055, 1237, 1280
BstNI CCWGG 5 cut(s) 142, 1038, 1213, 1308, 1377
BstNSI RCATGY 3 cut(s) 316, 1180, 1231
BstPI GGTNACC 1 cut(s) 610
BstSCI CCNGG 5 cut(s) 140, 1036, 1211, 1306, 1375
BstSFI CTRYAG 1 cut(s) 1110
BstSLI GKGCMC 2 cut(s) 631, 882
BstUI CGCG 2 cut(s) 165, 237
BstV1I GCAGC 5 cut(s) 420, 442, 1004, 1252, 1336
BstV2I GAAGAC 1 cut(s) 124
BstX2I RGATCY 2 cut(s) 1202, 1372
BstYI RGATCY 2 cut(s) 1202, 1372
BstZ17I GTATAC 1 cut(s) 408
BsuI GTATCC 2 cut(s) 1325, 1388
BsuRI GGCC 7 cut(s) 21, 126, 804, 826, 1058, 1216, 1343
BtgI CCRYGG 2 cut(s) 52, 163
BtsCI GGATG 5 cut(s) 231, 695, 805, 1293, 1392
BtsI GCAGTG 1 cut(s) 1083
BtsIMutI CAGTG 3 cut(s) 847, 913, 1083
Cfr10I RCCGGY 1 cut(s) 1150
Cfr13I GGNCC 2 cut(s) 144, 1342
Cfr42I CCGCGG 1 cut(s) 166
CseI GACGC 2 cut(s) 205, 1050
CspAI ACCGGT 1 cut(s) 1150
CviAII CATG 8 cut(s) 244, 313, 347, 392, 1177, 1190, 1228, 1321
DdeI CTNAG 4 cut(s) 342, 702, 954, 1248
DpnI GATC 9 cut(s) 93, 98, 107, 398, 483, 774, 972, 1204, 1374
DpnII GATC 9 cut(s) 91, 96, 105, 396, 481, 772, 970, 1202, 1372
EaeI YGGCCR 2 cut(s) 824, 1056
Eco130I CCWWGG 2 cut(s) 201, 643
Eco147I AGGCCT 1 cut(s) 21
Eco47I GGWCC 1 cut(s) 144
Eco91I GGTNACC 1 cut(s) 610
EcoNI CCTNNNNNAGG 1 cut(s) 1035
EcoO65I GGTNACC 1 cut(s) 610
EcoRII CCWGG 5 cut(s) 140, 1036, 1211, 1306, 1375
EcoT14I CCWWGG 2 cut(s) 201, 643
EcoT22I ATGCAT 2 cut(s) 695, 1051
ErhI CCWWGG 2 cut(s) 201, 643
Esp3I CGTCTC 1 cut(s) 223
FaeI CATG 8 cut(s) 247, 316, 350, 395, 1180, 1193, 1231, 1324
FaqI GGGAC 1 cut(s) 1138
FatI CATG 8 cut(s) 243, 312, 346, 391, 1176, 1189, 1227, 1320
FauI CCCGC 1 cut(s) 246
FauNDI CATATG 2 cut(s) 617, 940
FbaI TGATCA 1 cut(s) 772
FblI GTMKAC 1 cut(s) 407
Fnu4HI GCNGC 6 cut(s) 166, 431, 434, 993, 1241, 1325
FokI GGATG 5 cut(s) 218, 702, 792, 1300, 1399
Fsp4HI GCNGC 6 cut(s) 166, 431, 434, 993, 1241, 1325
FspBI CTAG 3 cut(s) 800, 815, 1416
GluI GCNGC 6 cut(s) 166, 431, 434, 993, 1241, 1325
GsuI CTGGAG 1 cut(s) 65
HaeIII GGCC 7 cut(s) 21, 126, 804, 826, 1058, 1216, 1343
HapII CCGG 3 cut(s) 71, 1097, 1151
HgaI GACGC 2 cut(s) 205, 1050
Hin1I GRCGYC 1 cut(s) 216
Hin1II CATG 8 cut(s) 247, 316, 350, 395, 1180, 1193, 1231, 1324
HincII GTYRAC 1 cut(s) 1102
HindII GTYRAC 1 cut(s) 1102
HindIII AAGCTT 1 cut(s) 281
HinfI GANTC 1 cut(s) 1303
HpaII CCGG 3 cut(s) 71, 1097, 1151
HphI GGTGA 4 cut(s) 289, 524, 908, 1340
Hpy166II GTNNAC 5 cut(s) 295, 408, 629, 916, 1102
Hpy188I TCNGA 5 cut(s) 96, 310, 554, 595, 1427
Hpy188III TCNNGA 4 cut(s) 184, 479, 1161, 1416
Hpy8I GTNNAC 5 cut(s) 295, 408, 629, 916, 1102
Hpy99I CGWCG 2 cut(s) 11, 215
HpyAV CCTTC 4 cut(s) 1115, 1145, 1152, 1359
HpyCH4III ACNGT 3 cut(s) 412, 908, 1359
HpyCH4IV ACGT 1 cut(s) 1420
HpyF10VI GCNNNNNNNGC 8 cut(s) 18, 76, 108, 430, 998, 1055, 1237, 1280
HpyF3I CTNAG 4 cut(s) 342, 702, 954, 1248
HpySE526I ACGT 1 cut(s) 1420
Hsp92I GRCGYC 1 cut(s) 216
Hsp92II CATG 8 cut(s) 247, 316, 350, 395, 1180, 1193, 1231, 1324
Ksp22I TGATCA 1 cut(s) 772
KspI CCGCGG 1 cut(s) 166
Kzo9I GATC 9 cut(s) 91, 96, 105, 396, 481, 772, 970, 1202, 1372
LmnI GCTCC 3 cut(s) 84, 580, 645
Lsp1109I GCAGC 5 cut(s) 420, 442, 1004, 1252, 1336
LweI GCATC 2 cut(s) 680, 948
MaeI CTAG 3 cut(s) 800, 815, 1416
MaeII ACGT 1 cut(s) 1420
MaeIII GTNAC 4 cut(s) 246, 512, 610, 1218
MalI GATC 9 cut(s) 93, 98, 107, 398, 483, 774, 972, 1204, 1374
MboI GATC 9 cut(s) 91, 96, 105, 396, 481, 772, 970, 1202, 1372
MboII GAAGA 3 cut(s) 124, 446, 833
MfeI CAATTG 1 cut(s) 463
MflI RGATCY 2 cut(s) 1202, 1372
MhlI GDGCHC 3 cut(s) 631, 882, 1189
MlsI TGGCCA 1 cut(s) 1058
MluNI TGGCCA 1 cut(s) 1058
MmeI TCCRAC 2 cut(s) 333, 667
Mox20I TGGCCA 1 cut(s) 1058
Mph1103I ATGCAT 2 cut(s) 695, 1051
MroXI GAANNNNTTC 1 cut(s) 1017
MscI TGGCCA 1 cut(s) 1058
MseI TTAA 4 cut(s) 387, 414, 710, 1224
MslI CAYNNNNRTG 2 cut(s) 270, 885
Msp20I TGGCCA 1 cut(s) 1058
MspA1I CMGCKG 2 cut(s) 165, 433
MspI CCGG 3 cut(s) 71, 1097, 1151
MspR9I CCNGG 5 cut(s) 142, 1038, 1213, 1308, 1377
MunI CAATTG 1 cut(s) 463
Mva1269I GAATGC 1 cut(s) 1242
MvaI CCWGG 5 cut(s) 142, 1038, 1213, 1308, 1377
MvnI CGCG 2 cut(s) 165, 237
MwoI GCNNNNNNNGC 8 cut(s) 18, 76, 108, 430, 998, 1055, 1237, 1280
NdeI CATATG 2 cut(s) 617, 940
NdeII GATC 9 cut(s) 91, 96, 105, 396, 481, 772, 970, 1202, 1372
NlaIII CATG 8 cut(s) 247, 316, 350, 395, 1180, 1193, 1231, 1324
NlaIV GGNNCC 3 cut(s) 80, 118, 576
NmeAIII GCCGAG 1 cut(s) 5
NmuCI GTSAC 1 cut(s) 512
NsiI ATGCAT 2 cut(s) 695, 1051
NspI RCATGY 3 cut(s) 316, 1180, 1231
PceI AGGCCT 1 cut(s) 21
PciI ACATGT 1 cut(s) 312
PcsI WCGNNNNNNNCGW 1 cut(s) 213
PctI GAATGC 1 cut(s) 1242
PdmI GAANNNNTTC 1 cut(s) 1017
PfeI GAWTC 1 cut(s) 1303
PflFI GACNNNGTC 1 cut(s) 215
PfoI TCCNGGA 1 cut(s) 1375
PinAI ACCGGT 1 cut(s) 1150
PkrI GCNGC 6 cut(s) 167, 432, 435, 994, 1242, 1326
PscI ACATGT 1 cut(s) 312
Psp6I CCWGG 5 cut(s) 140, 1036, 1211, 1306, 1375
PspEI GGTNACC 1 cut(s) 610
PspGI CCWGG 5 cut(s) 140, 1036, 1211, 1306, 1375
PspN4I GGNNCC 3 cut(s) 80, 118, 576
PspPI GGNCC 2 cut(s) 144, 1342
PsuI RGATCY 2 cut(s) 1202, 1372
PsyI GACNNNGTC 1 cut(s) 215
PvuII CAGCTG 1 cut(s) 433
RseI CAYNNNNRTG 2 cut(s) 270, 885
SacII CCGCGG 1 cut(s) 166
SaqAI TTAA 4 cut(s) 387, 414, 710, 1224
SatI GCNGC 6 cut(s) 166, 431, 434, 993, 1241, 1325
Sau3AI GATC 9 cut(s) 91, 96, 105, 396, 481, 772, 970, 1202, 1372
Sau96I GGNCC 2 cut(s) 144, 1342
ScrFI CCNGG 5 cut(s) 142, 1038, 1213, 1308, 1377
SduI GDGCHC 3 cut(s) 631, 882, 1189
SfaNI GCATC 2 cut(s) 680, 948
SfcI CTRYAG 1 cut(s) 1110
Sfr303I CCGCGG 1 cut(s) 166
SgrBI CCGCGG 1 cut(s) 166
SinI GGWCC 1 cut(s) 144
SmiMI CAYNNNNRTG 2 cut(s) 270, 885
SseBI AGGCCT 1 cut(s) 21
SsiI CCGC 6 cut(s) 57, 163, 165, 228, 235, 253
SspMI CTAG 3 cut(s) 800, 815, 1416
StuI AGGCCT 1 cut(s) 21
StyD4I CCNGG 5 cut(s) 140, 1036, 1211, 1306, 1375
StyI CCWWGG 2 cut(s) 201, 643
TaaI ACNGT 3 cut(s) 412, 908, 1359
TaiI ACGT 1 cut(s) 1423
TaqI TCGA 3 cut(s) 672, 963, 976
TauI GCSGC 1 cut(s) 168
TfiI GAWTC 1 cut(s) 1303
Tru1I TTAA 4 cut(s) 387, 414, 710, 1224
Tru9I TTAA 4 cut(s) 387, 414, 710, 1224
TscAI CASTG 3 cut(s) 854, 913, 1083
TseFI GTSAC 1 cut(s) 512
TseI GCWGC 5 cut(s) 430, 433, 992, 1240, 1324
Tsp45I GTSAC 1 cut(s) 512
TspDTI ATGAA 4 cut(s) 372, 446, 464, 1316
TspGWI ACGGA 1 cut(s) 531
TspRI CASTG 3 cut(s) 854, 913, 1083
Tth111I GACNNNGTC 1 cut(s) 215
VneI GTGCAC 1 cut(s) 627
VpaK11BI GGWCC 1 cut(s) 144
XagI CCTNNNNNAGG 1 cut(s) 1035
XapI RAATTY 1 cut(s) 188
XbaI TCTAGA 1 cut(s) 1415
XceI RCATGY 3 cut(s) 316, 1180, 1231
XmiI GTMKAC 1 cut(s) 407
XmnI GAANNNNTTC 1 cut(s) 1017
XspI CTAG 3 cut(s) 800, 815, 1416
Zsp2I ATGCAT 2 cut(s) 695, 1051
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.