Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0005816

Physical Location & Seq

Genomic Coordinates Forward (+)

38177835 .. 38185355

Gene Structure 7521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG303700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGGGCGACGGCAACCGAGGCCTCTCGGCTAATTCTAATTCTAATTCAAATCACGGCGGTAGCAACAAGCCGGAATGGCTCCAGCAGTATGATCTGATCGGCAAGATCGGCGAGGGAACCTACGGCCTCGTCTTCCTCGCCAGGACCAAGACCCCTAACAACCGCGGCAAATCCATTGCCATCAAGAAATTCAAGCAGTCCAAGGACGGCGACGGCGTCTCCCCCACCGCCATCCGCGAAATCATGTTACTGCGGGAAATCTCCCACGATAATGTGGTGAAGCTTGTGAATGTTCACATCAATCACTCCGACATGTCGCTCTATCTGGCTTTTGATTACGCTGAGCATGACCTTTATGAAATCATTAGACATCATAGAGACAAAGTTAATCATGCGATCAATCAGTATACTGTTAAGTCCTTGCTATGGCAGCTGCTTAATGGACTAAATTATCTTCATAGCAATTGGATAATTCATCGTGATCTAAAGCCATCTAATATCTTGGTTATGGGTGACGGAGAGGAACAAGGAGTGGTCAAAATTGCCGATTTCGGACTTGCAAGAATATATCAGGCTCCCTTGAAGTCGTTGTCTGAAAACGGGGTTGTGGTAACCATATGGTATCGTGCACCAGAATTGCTCCTTGGGGCAAAGCACTACACAAGTGCTGTCGATATGTGGGCTGTTGGATGCATTTTTGCTGAGCTTTTAACGTTGAAGCCATTATTTCAAGGGGCAGAAGTGAAAGCTACACCAAATCCTTTCCAGCTTGATCAACTTGACAAGATTTTCAAAGTTCTAGGCCATCCTACGCTAGAAAAGTGGCCGACACTTTCAAATCTTCCACACTGGCAACAAGACGTACAACACATTCAAGGGCACAAGTATGACAATACTGCACTTTACAGTGTAGTTCACCTCTCTCCAAAAAGTCCTGCATATGACCTCCTATCTAAGATGCTCGAATATGATCCTCGAAAGCGTATAACAGCAGCACAAGCGTTAGAACATGAATACTTTCGTATAGAACCTCTGCCAGGACGCAATGCATTGATAGCCAGTCAAGGAGAAAAGGCAGTGAATTACCTTACTCGTCCGGTTGACACAACTACAGACTTTGAAGGGACAACCAGCCTTCAACCTTCACAACCGGTATGGTTATGTGGTTTTGCAACTAAATTAGTATTGTATTCTAAAGCTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007346 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016592 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0070013 GO:0071704 GO:0097472 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

401

Amino Acids

45.13

Weight (kDa)

8.22

Isoelectric Point (pI)

33.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	30 - 340	2.2e-67	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	33 - 239	5e-34	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005816)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63610
fragaria_vesca	FvH4_1g25340 FvH4_1g25340 FvH4_1g25350
malus_domestica	MD00G1110700.v1.1 MD15G1137900.v1.1
prunus_persica	Prupe.4G280700_v2.0.a1
pyrus_communis	pycom1146g00040
rosa_chinensis	RchiOBHm_Chr2g0123381 RchiOBHm_Chr2g0123391
rosa_laevigata	RLG00000018746
rosa_multiflora	Rmu_sc0004330.1_g000003 Rmu_sc0024478.1_g000001 Rmu_sc0041165.1_g000001 Rmu_ssc0000345.1_g000001
rosa_roxburghii	Rroxscaffold_2G00120740 Rroxscaffold_2G00120750
rosa_rugosa	Rorug02G0244900 Rorug02G0244900 Rorug02G0245000
rosa_samantha	Rh2AG303700 Rh2BG311800 Rh2CG290300 Rh2CG290400 Rh2DG327800 Rh2DG327900
rosa_wichuraiana	Rw2G024310 Rw2G024320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	407
AccII	CGCG	2 cut(s)	165, 237
AciI	CCGC	6 cut(s)	57, 163, 165, 228, 235, 253
AclI	AACGTT	1 cut(s)	713
AclWI	GGATC	1 cut(s)	965
AcoI	YGGCCR	1 cut(s)	824
AcsI	RAATTY	1 cut(s)	188
AcyI	GRCGYC	1 cut(s)	216
AfaI	GTAC	1 cut(s)	864
AfiI	CCNNNNNNNGG	2 cut(s)	426, 1037
AflIII	ACRYGT	1 cut(s)	312
AgeI	ACCGGT	1 cut(s)	1150
AjnI	CCWGG	2 cut(s)	140, 1036
AjuI	GAANNNNNNNTTGG	2 cut(s)	627, 659
AluBI	AGCT	6 cut(s)	283, 433, 706, 749, 769, 1199
AluI	AGCT	6 cut(s)	283, 433, 706, 749, 769, 1199
Alw21I	GWGCWC	1 cut(s)	631
Alw26I	GTCTC	2 cut(s)	223, 372
Alw44I	GTGCAC	1 cut(s)	627
AlwI	GGATC	1 cut(s)	965
AoxI	GGCC	4 cut(s)	19, 124, 802, 824
ApaLI	GTGCAC	1 cut(s)	627
ApeKI	GCWGC	3 cut(s)	430, 433, 992
ApoI	RAATTY	1 cut(s)	188
AsiGI	ACCGGT	1 cut(s)	1150
Asp700I	GAANNNNTTC	1 cut(s)	1017
AspS9I	GGNCC	1 cut(s)	144
AsuHPI	GGTGA	3 cut(s)	289, 524, 908
AvaII	GGWCC	1 cut(s)	144
BaeGI	GKGCMC	2 cut(s)	631, 882
BbsI	GAAGAC	1 cut(s)	124
Bbv12I	GWGCWC	1 cut(s)	631
BbvI	GCAGC	3 cut(s)	420, 442, 1004
BccI	CCATC	4 cut(s)	188, 239, 499, 813
BceAI	ACGGC	5 cut(s)	25, 70, 139, 223, 229
BciT130I	CCWGG	2 cut(s)	142, 1038
BclI	TGATCA	1 cut(s)	772
BcoDI	GTCTC	2 cut(s)	223, 372
BfaI	CTAG	2 cut(s)	800, 815
BfmI	CTRYAG	1 cut(s)	1110
BglI	GCCNNNNNGGC	1 cut(s)	76
BisI	GCNGC	4 cut(s)	166, 431, 434, 993
BlpI	GCTNAGC	2 cut(s)	342, 702
BlsI	GCNGC	4 cut(s)	167, 432, 435, 994
Bme1390I	CCNGG	2 cut(s)	142, 1038
Bme18I	GGWCC	1 cut(s)	144
BmgT120I	GGNCC	1 cut(s)	144
BmiI	GGNNCC	3 cut(s)	80, 118, 576
BmrFI	CCNGG	2 cut(s)	142, 1038
BmsI	GCATC	2 cut(s)	680, 948
BpiI	GAAGAC	1 cut(s)	124
BpmI	CTGGAG	1 cut(s)	65
Bpu1102I	GCTNAGC	2 cut(s)	342, 702
BsaHI	GRCGYC	1 cut(s)	216
BsaJI	CCNNGG	4 cut(s)	16, 163, 201, 643
BsaWI	WCCGGW	2 cut(s)	1096, 1150
BsaXI	ACNNNNNCTCC	2 cut(s)	203, 233
Bsc4I	CCNNNNNNNGG	2 cut(s)	426, 1037
Bse118I	RCCGGY	1 cut(s)	1150
Bse1I	ACTGG	2 cut(s)	854, 1059
Bse3DI	GCAATG	2 cut(s)	174, 1051
BseBI	CCWGG	2 cut(s)	142, 1038
BseDI	CCNNGG	4 cut(s)	16, 163, 201, 643
BseGI	GGATG	3 cut(s)	231, 695, 805
BseLI	CCNNNNNNNGG	2 cut(s)	426, 1037
BseMI	GCAATG	2 cut(s)	174, 1051
BseMII	CTCAG	2 cut(s)	333, 693
BseNI	ACTGG	2 cut(s)	854, 1059
BseSI	GKGCMC	2 cut(s)	631, 882
BseXI	GCAGC	3 cut(s)	420, 442, 1004
BsgI	GTGCAG	1 cut(s)	882
Bsh1236I	CGCG	2 cut(s)	165, 237
BshFI	GGCC	4 cut(s)	21, 126, 804, 826
BshTI	ACCGGT	1 cut(s)	1150
BsiHKAI	GWGCWC	1 cut(s)	631
BsiSI	CCGG	3 cut(s)	71, 1097, 1151
BslFI	GGGAC	1 cut(s)	1138
BslI	CCNNNNNNNGG	2 cut(s)	426, 1037
BsmAI	GTCTC	2 cut(s)	223, 372
BsmBI	CGTCTC	1 cut(s)	223
BsmFI	GGGAC	1 cut(s)	1138
BsnI	GGCC	4 cut(s)	21, 126, 804, 826
Bsp1286I	GDGCHC	2 cut(s)	631, 882
Bsp143I	GATC	7 cut(s)	91, 96, 105, 396, 481, 772, 970
Bsp1720I	GCTNAGC	2 cut(s)	342, 702
BspACI	CCGC	6 cut(s)	57, 163, 165, 228, 235, 253
BspANI	GGCC	4 cut(s)	21, 126, 804, 826
BspCNI	CTCAG	2 cut(s)	334, 694
BspFNI	CGCG	2 cut(s)	165, 237
BspLI	GGNNCC	3 cut(s)	80, 118, 576
BspPI	GGATC	1 cut(s)	965
BsrDI	GCAATG	2 cut(s)	174, 1051
BsrFI	RCCGGY	1 cut(s)	1150
BsrI	ACTGG	2 cut(s)	854, 1059
BssAI	RCCGGY	1 cut(s)	1150
BssECI	CCNNGG	4 cut(s)	16, 163, 201, 643
BssMI	GATC	7 cut(s)	91, 96, 105, 396, 481, 772, 970
BssNAI	GTATAC	1 cut(s)	408
BssNI	GRCGYC	1 cut(s)	216
BssT1I	CCWWGG	2 cut(s)	201, 643
Bst1107I	GTATAC	1 cut(s)	408
Bst2UI	CCWGG	2 cut(s)	142, 1038
Bst4CI	ACNGT	2 cut(s)	412, 908
BstACI	GRCGYC	1 cut(s)	216
BstDEI	CTNAG	3 cut(s)	342, 702, 954
BstDSI	CCRYGG	1 cut(s)	163
BstEII	GGTNACC	1 cut(s)	610
BstENI	CCTNNNNNAGG	1 cut(s)	1035
BstF5I	GGATG	3 cut(s)	231, 695, 805
BstFNI	CGCG	2 cut(s)	165, 237
BstKTI	GATC	7 cut(s)	94, 99, 108, 399, 484, 775, 973
BstMAI	GTCTC	2 cut(s)	223, 372
BstMBI	GATC	7 cut(s)	91, 96, 105, 396, 481, 772, 970
BstMWI	GCNNNNNNNGC	6 cut(s)	18, 76, 108, 430, 998, 1055
BstNI	CCWGG	2 cut(s)	142, 1038
BstNSI	RCATGY	1 cut(s)	316
BstPI	GGTNACC	1 cut(s)	610
BstSCI	CCNGG	2 cut(s)	140, 1036
BstSFI	CTRYAG	1 cut(s)	1110
BstSLI	GKGCMC	2 cut(s)	631, 882
BstUI	CGCG	2 cut(s)	165, 237
BstV1I	GCAGC	3 cut(s)	420, 442, 1004
BstV2I	GAAGAC	1 cut(s)	124
BstZ17I	GTATAC	1 cut(s)	408
BsuRI	GGCC	4 cut(s)	21, 126, 804, 826
BtgI	CCRYGG	1 cut(s)	163
BtsCI	GGATG	3 cut(s)	231, 695, 805
BtsI	GCAGTG	1 cut(s)	1083
BtsIMutI	CAGTG	3 cut(s)	847, 913, 1083
Cfr10I	RCCGGY	1 cut(s)	1150
Cfr13I	GGNCC	1 cut(s)	144
Cfr42I	CCGCGG	1 cut(s)	166
CseI	GACGC	2 cut(s)	205, 1050
Csp6I	GTAC	1 cut(s)	863
CspAI	ACCGGT	1 cut(s)	1150
CviAII	CATG	5 cut(s)	244, 313, 347, 392, 1010
CviQI	GTAC	1 cut(s)	863
DdeI	CTNAG	3 cut(s)	342, 702, 954
DpnI	GATC	7 cut(s)	93, 98, 107, 398, 483, 774, 972
DpnII	GATC	7 cut(s)	91, 96, 105, 396, 481, 772, 970
EaeI	YGGCCR	1 cut(s)	824
Eco130I	CCWWGG	2 cut(s)	201, 643
Eco147I	AGGCCT	1 cut(s)	21
Eco47I	GGWCC	1 cut(s)	144
Eco91I	GGTNACC	1 cut(s)	610
EcoNI	CCTNNNNNAGG	1 cut(s)	1035
EcoO65I	GGTNACC	1 cut(s)	610
EcoRII	CCWGG	2 cut(s)	140, 1036
EcoT14I	CCWWGG	2 cut(s)	201, 643
EcoT22I	ATGCAT	2 cut(s)	695, 1051
ErhI	CCWWGG	2 cut(s)	201, 643
Esp3I	CGTCTC	1 cut(s)	223
FaeI	CATG	5 cut(s)	247, 316, 350, 395, 1013
FaqI	GGGAC	1 cut(s)	1138
FatI	CATG	5 cut(s)	243, 312, 346, 391, 1009
FauI	CCCGC	1 cut(s)	246
FauNDI	CATATG	2 cut(s)	617, 940
FbaI	TGATCA	1 cut(s)	772
FblI	GTMKAC	1 cut(s)	407
Fnu4HI	GCNGC	4 cut(s)	166, 431, 434, 993
FokI	GGATG	3 cut(s)	218, 702, 792
Fsp4HI	GCNGC	4 cut(s)	166, 431, 434, 993
FspBI	CTAG	2 cut(s)	800, 815
GluI	GCNGC	4 cut(s)	166, 431, 434, 993
GsuI	CTGGAG	1 cut(s)	65
HaeIII	GGCC	4 cut(s)	21, 126, 804, 826
HapII	CCGG	3 cut(s)	71, 1097, 1151
HgaI	GACGC	2 cut(s)	205, 1050
Hin1I	GRCGYC	1 cut(s)	216
Hin1II	CATG	5 cut(s)	247, 316, 350, 395, 1013
HincII	GTYRAC	1 cut(s)	1102
HindII	GTYRAC	1 cut(s)	1102
HindIII	AAGCTT	2 cut(s)	281, 1197
HpaII	CCGG	3 cut(s)	71, 1097, 1151
HphI	GGTGA	3 cut(s)	289, 524, 908
Hpy166II	GTNNAC	5 cut(s)	295, 408, 629, 916, 1102
Hpy188I	TCNGA	4 cut(s)	96, 310, 554, 595
Hpy188III	TCNNGA	2 cut(s)	184, 479
Hpy8I	GTNNAC	5 cut(s)	295, 408, 629, 916, 1102
Hpy99I	CGWCG	2 cut(s)	11, 215
HpyAV	CCTTC	3 cut(s)	1115, 1145, 1152
HpyCH4III	ACNGT	2 cut(s)	412, 908
HpyCH4IV	ACGT	2 cut(s)	713, 861
HpyCH4V	TGCA	7 cut(s)	560, 629, 693, 899, 938, 1049, 1172
HpyF10VI	GCNNNNNNNGC	6 cut(s)	18, 76, 108, 430, 998, 1055
HpyF3I	CTNAG	3 cut(s)	342, 702, 954
HpySE526I	ACGT	2 cut(s)	713, 861
Hsp92I	GRCGYC	1 cut(s)	216
Hsp92II	CATG	5 cut(s)	247, 316, 350, 395, 1013
Ksp22I	TGATCA	1 cut(s)	772
KspI	CCGCGG	1 cut(s)	166
Kzo9I	GATC	7 cut(s)	91, 96, 105, 396, 481, 772, 970
LmnI	GCTCC	3 cut(s)	84, 580, 645
Lsp1109I	GCAGC	3 cut(s)	420, 442, 1004
LweI	GCATC	2 cut(s)	680, 948
MaeI	CTAG	2 cut(s)	800, 815
MaeII	ACGT	2 cut(s)	713, 861
MaeIII	GTNAC	3 cut(s)	246, 512, 610
MalI	GATC	7 cut(s)	93, 98, 107, 398, 483, 774, 972
MboI	GATC	7 cut(s)	91, 96, 105, 396, 481, 772, 970
MboII	GAAGA	3 cut(s)	124, 446, 833
MfeI	CAATTG	1 cut(s)	463
MhlI	GDGCHC	2 cut(s)	631, 882
MmeI	TCCRAC	2 cut(s)	333, 667
Mph1103I	ATGCAT	2 cut(s)	695, 1051
MroXI	GAANNNNTTC	1 cut(s)	1017
MseI	TTAA	4 cut(s)	387, 414, 438, 710
MslI	CAYNNNNRTG	2 cut(s)	270, 885
MspA1I	CMGCKG	2 cut(s)	165, 433
MspI	CCGG	3 cut(s)	71, 1097, 1151
MspR9I	CCNGG	2 cut(s)	142, 1038
MunI	CAATTG	1 cut(s)	463
MvaI	CCWGG	2 cut(s)	142, 1038
MvnI	CGCG	2 cut(s)	165, 237
MwoI	GCNNNNNNNGC	6 cut(s)	18, 76, 108, 430, 998, 1055
NdeI	CATATG	2 cut(s)	617, 940
NdeII	GATC	7 cut(s)	91, 96, 105, 396, 481, 772, 970
NlaIII	CATG	5 cut(s)	247, 316, 350, 395, 1013
NlaIV	GGNNCC	3 cut(s)	80, 118, 576
NmeAIII	GCCGAG	1 cut(s)	5
NmuCI	GTSAC	1 cut(s)	512
NsiI	ATGCAT	2 cut(s)	695, 1051
NspI	RCATGY	1 cut(s)	316
PceI	AGGCCT	1 cut(s)	21
PciI	ACATGT	1 cut(s)	312
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PdmI	GAANNNNTTC	1 cut(s)	1017
PflFI	GACNNNGTC	1 cut(s)	215
PinAI	ACCGGT	1 cut(s)	1150
PkrI	GCNGC	4 cut(s)	167, 432, 435, 994
PscI	ACATGT	1 cut(s)	312
Psp1406I	AACGTT	1 cut(s)	713
Psp6I	CCWGG	2 cut(s)	140, 1036
PspEI	GGTNACC	1 cut(s)	610
PspGI	CCWGG	2 cut(s)	140, 1036
PspN4I	GGNNCC	3 cut(s)	80, 118, 576
PspPI	GGNCC	1 cut(s)	144
PsyI	GACNNNGTC	1 cut(s)	215
PvuII	CAGCTG	1 cut(s)	433
RsaI	GTAC	1 cut(s)	864
RsaNI	GTAC	1 cut(s)	863
RseI	CAYNNNNRTG	2 cut(s)	270, 885
SacII	CCGCGG	1 cut(s)	166
SaqAI	TTAA	4 cut(s)	387, 414, 438, 710
SatI	GCNGC	4 cut(s)	166, 431, 434, 993
Sau3AI	GATC	7 cut(s)	91, 96, 105, 396, 481, 772, 970
Sau96I	GGNCC	1 cut(s)	144
ScrFI	CCNGG	2 cut(s)	142, 1038
SduI	GDGCHC	2 cut(s)	631, 882
SfaNI	GCATC	2 cut(s)	680, 948
SfcI	CTRYAG	1 cut(s)	1110
Sfr303I	CCGCGG	1 cut(s)	166
SgrBI	CCGCGG	1 cut(s)	166
SinI	GGWCC	1 cut(s)	144
SmiMI	CAYNNNNRTG	2 cut(s)	270, 885
SseBI	AGGCCT	1 cut(s)	21
SsiI	CCGC	6 cut(s)	57, 163, 165, 228, 235, 253
SspMI	CTAG	2 cut(s)	800, 815
StuI	AGGCCT	1 cut(s)	21
StyD4I	CCNGG	2 cut(s)	140, 1036
StyI	CCWWGG	2 cut(s)	201, 643
TaaI	ACNGT	2 cut(s)	412, 908
TaiI	ACGT	2 cut(s)	716, 864
TaqI	TCGA	3 cut(s)	672, 963, 976
TauI	GCSGC	1 cut(s)	168
Tru1I	TTAA	4 cut(s)	387, 414, 438, 710
Tru9I	TTAA	4 cut(s)	387, 414, 438, 710
TscAI	CASTG	3 cut(s)	854, 913, 1083
TseFI	GTSAC	1 cut(s)	512
TseI	GCWGC	3 cut(s)	430, 433, 992
Tsp45I	GTSAC	1 cut(s)	512
TspDTI	ATGAA	4 cut(s)	372, 446, 464, 1026
TspGWI	ACGGA	1 cut(s)	531
TspRI	CASTG	3 cut(s)	854, 913, 1083
Tth111I	GACNNNGTC	1 cut(s)	215
VneI	GTGCAC	1 cut(s)	627
VpaK11BI	GGWCC	1 cut(s)	144
XagI	CCTNNNNNAGG	1 cut(s)	1035
XapI	RAATTY	1 cut(s)	188
XceI	RCATGY	1 cut(s)	316
XmiI	GTMKAC	1 cut(s)	407
XmnI	GAANNNNTTC	1 cut(s)	1017
XspI	CTAG	2 cut(s)	800, 815
Zsp2I	ATGCAT	2 cut(s)	695, 1051

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.