AT5G63690

Nucleic acid-binding, OB-fold-like (InterPro IPR016027), Nucleic acid-binding, OB-fold (InterPro IPR012340)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0007842
Physical Location & Seq
Reverse (-)
25492772 .. 25493699
928 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G63690.2

Sequence Viewer

Length: 420 bp
ATGCAATTGTTTCTCAAGGATATAGTTCCAGCGGCGCAGAACAACATAGACACGCGTTTCATCATCCTCGACAAAGCCAAATCGTCTGCGGCAAACGGGAAGAATTATTGTATTGCGTTGGCGGCGGATGAAACGGCTGCGGTTCACATACAGCTGTGGGGAGATGAGTGCGACGCGTTCGAGGCAGGAGATATCGTGAAGCTCACCAATGGGATTTTCTCATACGTGCGTAACAGTGGACTTATTCTCAGAGCTGGGAAGCGTGGGAAGATGGAGAAGATGGGAGAGTTCACGGTTGCGTTTGTCGAAACGCCAAACATTAGTGAGATCCAATGGATTCCTGATCCTGAGAATCCCAAACGCTATATTCAGAGCGGCGTCGTTTCAGCTTATTCCCGTATCTTCCCTCCTTTGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.36

Weight (kDa)

5.82

Isoelectric Point (pI)

42.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 375
AccII CGCG 2 cut(s) 55, 176
AciI CCGC 6 cut(s) 32, 89, 122, 125, 140, 375
AclWI GGATC 2 cut(s) 322, 338
AcyI GRCGYC 1 cut(s) 378
AflIII ACRYGT 2 cut(s) 53, 174
AjuI GAANNNNNNNTTGG 2 cut(s) 200, 232
AluBI AGCT 4 cut(s) 154, 202, 254, 389
AluI AGCT 4 cut(s) 154, 202, 254, 389
AlwI GGATC 2 cut(s) 322, 338
ApeKI GCWGC 1 cut(s) 137
AspLEI GCGC 1 cut(s) 37
AsuHPI GGTGA 1 cut(s) 196
BbvI GCAGC 1 cut(s) 124
BccI CCATC 2 cut(s) 265, 274
BceAI ACGGC 1 cut(s) 150
BisI GCNGC 5 cut(s) 33, 90, 123, 138, 376
BlsI GCNGC 5 cut(s) 34, 91, 124, 139, 377
BsaAI YACGTR 1 cut(s) 226
BsaHI GRCGYC 1 cut(s) 378
BsaXI ACNNNNNCTCC 2 cut(s) 180, 210
BseGI GGATG 2 cut(s) 63, 133
BseMII CTCAG 2 cut(s) 262, 339
BseXI GCAGC 1 cut(s) 124
BseYI CCCAGC 1 cut(s) 254
Bsh1236I CGCG 2 cut(s) 55, 176
Bsp143I GATC 2 cut(s) 327, 343
BspACI CCGC 6 cut(s) 32, 89, 122, 125, 140, 375
BspCNI CTCAG 2 cut(s) 261, 340
BspFNI CGCG 2 cut(s) 55, 176
BspPI GGATC 2 cut(s) 322, 338
BsrBI CCGCTC 1 cut(s) 375
BssMI GATC 2 cut(s) 327, 343
BssNI GRCGYC 1 cut(s) 378
Bst4CI ACNGT 2 cut(s) 236, 295
BstACI GRCGYC 1 cut(s) 378
BstBAI YACGTR 1 cut(s) 226
BstDEI CTNAG 2 cut(s) 248, 348
BstF5I GGATG 2 cut(s) 63, 133
BstFNI CGCG 2 cut(s) 55, 176
BstHHI GCGC 1 cut(s) 37
BstKTI GATC 2 cut(s) 330, 346
BstMBI GATC 2 cut(s) 327, 343
BstMWI GCNNNNNNNGC 2 cut(s) 122, 182
BstUI CGCG 2 cut(s) 55, 176
BstV1I GCAGC 1 cut(s) 124
BstX2I RGATCY 1 cut(s) 327
BstYI RGATCY 1 cut(s) 327
BtsCI GGATG 2 cut(s) 63, 133
BtsIMutI CAGTG 1 cut(s) 241
CfoI GCGC 1 cut(s) 37
CseI GACGC 2 cut(s) 182, 367
CviJI RGCY 6 cut(s) 77, 137, 154, 202, 254, 389
CviKI_1 RGCY 6 cut(s) 77, 137, 154, 202, 254, 389
DdeI CTNAG 2 cut(s) 248, 348
DpnI GATC 2 cut(s) 329, 345
DpnII GATC 2 cut(s) 327, 343
EciI GGCGGA 1 cut(s) 140
Eco32I GATATC 1 cut(s) 193
EcoRV GATATC 1 cut(s) 193
FaiI YATR 5 cut(s) 23, 47, 149, 223, 366
Fnu4HI GCNGC 5 cut(s) 33, 90, 123, 138, 376
FokI GGATG 2 cut(s) 50, 140
Fsp4HI GCNGC 5 cut(s) 33, 90, 123, 138, 376
GlaI GCGC 1 cut(s) 36
GluI GCNGC 5 cut(s) 33, 90, 123, 138, 376
GsaI CCCAGC 1 cut(s) 258
HgaI GACGC 2 cut(s) 182, 367
HhaI GCGC 1 cut(s) 37
Hin1I GRCGYC 1 cut(s) 378
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HinfI GANTC 2 cut(s) 337, 352
HphI GGTGA 1 cut(s) 196
Hpy166II GTNNAC 3 cut(s) 145, 239, 291
Hpy188I TCNGA 2 cut(s) 251, 372
Hpy188III TCNNGA 3 cut(s) 196, 341, 347
Hpy8I GTNNAC 3 cut(s) 145, 239, 291
Hpy99I CGWCG 2 cut(s) 176, 383
HpyCH4III ACNGT 2 cut(s) 236, 295
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 2 cut(s) 122, 182
HpyF3I CTNAG 2 cut(s) 248, 348
HpySE526I ACGT 1 cut(s) 225
Hsp92I GRCGYC 1 cut(s) 378
HspAI GCGC 1 cut(s) 35
Kzo9I GATC 2 cut(s) 327, 343
LpnPI CCDG 5 cut(s) 42, 171, 240, 354, 360
Lsp1109I GCAGC 1 cut(s) 124
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 1 cut(s) 230
MalI GATC 2 cut(s) 329, 345
MbiI CCGCTC 1 cut(s) 375
MboI GATC 2 cut(s) 327, 343
MboII GAAGA 4 cut(s) 112, 280, 289, 394
MfeI CAATTG 1 cut(s) 5
MflI RGATCY 1 cut(s) 327
MluCI AATT 2 cut(s) 5, 103
MluI ACGCGT 2 cut(s) 53, 174
MnlI CCTC 3 cut(s) 77, 175, 417
MspA1I CMGCKG 2 cut(s) 32, 154
MunI CAATTG 1 cut(s) 5
MvnI CGCG 2 cut(s) 55, 176
MwoI GCNNNNNNNGC 2 cut(s) 122, 182
NdeII GATC 2 cut(s) 327, 343
PfeI GAWTC 2 cut(s) 337, 352
PkrI GCNGC 5 cut(s) 34, 91, 124, 139, 377
Ppu21I YACGTR 1 cut(s) 226
PspFI CCCAGC 1 cut(s) 254
PsuI RGATCY 1 cut(s) 327
PvuII CAGCTG 1 cut(s) 154
SatI GCNGC 5 cut(s) 33, 90, 123, 138, 376
Sau3AI GATC 2 cut(s) 327, 343
SetI ASST 5 cut(s) 156, 204, 228, 256, 391
SmlI CTYRAG 1 cut(s) 14
SmoI CTYRAG 1 cut(s) 14
Sse9I AATT 2 cut(s) 5, 103
SsiI CCGC 6 cut(s) 32, 89, 122, 125, 140, 375
TaaI ACNGT 2 cut(s) 236, 295
TaiI ACGT 1 cut(s) 228
TaqI TCGA 3 cut(s) 69, 180, 306
TasI AATT 2 cut(s) 5, 103
TauI GCSGC 4 cut(s) 35, 92, 125, 378
TfiI GAWTC 2 cut(s) 337, 352
TscAI CASTG 1 cut(s) 241
TseI GCWGC 1 cut(s) 137
TspDTI ATGAA 2 cut(s) 49, 144
TspRI CASTG 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.