Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0007842

Physical Location & Seq

Genomic Coordinates Reverse (-)

28685035 .. 28685924

Gene Structure 890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1200100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGTGCCACTGAAAGACATAGTGCCAGCAGCACAGAACAACATAAACACGAGGTTCATACTTTTGGACAAAGGCATCGTCAAAACTACAACTACTACTTCATCACAAGCCCAAAACAAGACATGCTTGGCGCTAGTGGCGGACGAGACTGCGGCGGTTCACTTCCAGCTGTGGGGGAACGAGTGCGACGCCTTTGAGCCCGGTGACATCGTGCAGTTGAGCAATGGCATCTTCTCTTACTGCAGGAACAACCTTTTGCTCAGGGCAGGCAAGAGAGGCAAAATTGAGAAGGTTGGGGAATTTCTGATGGCATATGTTGAGACGCCGAATTTGAGTGAGATTCGTTGGGTTCCTGACCCTAATAATTCCAAGAAGTACATTCAGGAGGCTGTGATCTCCCCACATTCTCGTATATTTCCTCCCAAATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

144

Amino Acids

15.99

Weight (kDa)

8.45

Isoelectric Point (pI)

42.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007842)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63690 AT5G63690
fragaria_vesca	FvH4_2g24470 FvH4_2g24470 FvH4_2g24470 FvH4_2g24470
malus_domestica	MD04G1200100.v1.1 MD12G1212600.v1.1
prunus_persica	Prupe.3G123100_v2.0.a1 Prupe.8G250400_v2.0.a1 Prupe.8G268000_v2.0.a1
pyrus_communis	pycom04g17660 pycom12g19880
rosa_chinensis	RchiOBHm_Chr6g0292311
rosa_laevigata	RLG00000012043
rosa_multiflora	Rmu_sc0001354.1_g000001 Rmu_sc0020608.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175220
rosa_rugosa	Rorug06G0225400
rosa_samantha	Rh6AG338800 Rh6BG345900 Rh6CG353000 Rh6DG338800
rosa_wichuraiana	Rw6G029490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AciI	CCGC	3 cut(s)	140, 152, 155
AcsI	RAATTY	2 cut(s)	299, 328
AcyI	GRCGYC	2 cut(s)	189, 323
AfaI	GTAC	1 cut(s)	377
AfiI	CCNNNNNNNGG	1 cut(s)	172
AluBI	AGCT	1 cut(s)	169
AluI	AGCT	1 cut(s)	169
Alw26I	GTCTC	2 cut(s)	140, 314
ApeKI	GCWGC	1 cut(s)	29
ApoI	RAATTY	2 cut(s)	299, 328
ArsI	GACNNNNNNTTYG	4 cut(s)	63, 95, 313, 345
AspLEI	GCGC	1 cut(s)	133
AsuC2I	CCSGG	1 cut(s)	201
AsuHPI	GGTGA	1 cut(s)	215
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	201
BauI	CACGAG	1 cut(s)	49
BbvI	GCAGC	1 cut(s)	41
BccI	CCATC	1 cut(s)	301
BcnI	CCSGG	1 cut(s)	201
BcoDI	GTCTC	2 cut(s)	140, 314
BfaI	CTAG	1 cut(s)	134
BfmI	CTRYAG	1 cut(s)	241
BfoI	RGCGCY	1 cut(s)	134
BisI	GCNGC	2 cut(s)	30, 153
BlsI	GCNGC	2 cut(s)	31, 154
Bme1390I	CCNGG	1 cut(s)	201
BmiI	GGNNCC	2 cut(s)	6, 351
BmrFI	CCNGG	1 cut(s)	201
BmsI	GCATC	2 cut(s)	84, 237
Bpu10I	CCTNAGC	1 cut(s)	260
BpuMI	CCSGG	1 cut(s)	201
BsaHI	GRCGYC	2 cut(s)	189, 323
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse3DI	GCAATG	1 cut(s)	229
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseMI	GCAATG	1 cut(s)	229
BseMII	CTCAG	1 cut(s)	274
BseXI	GCAGC	1 cut(s)	41
BsgI	GTGCAG	1 cut(s)	233
BshNI	GGYRCC	1 cut(s)	4
BsiSI	CCGG	1 cut(s)	201
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmAI	GTCTC	2 cut(s)	140, 314
BsmBI	CGTCTC	1 cut(s)	314
Bsp1286I	GDGCHC	1 cut(s)	201
Bsp143I	GATC	1 cut(s)	393
BspACI	CCGC	3 cut(s)	140, 152, 155
BspCNI	CTCAG	1 cut(s)	273
BspLI	GGNNCC	2 cut(s)	6, 351
BspMAI	CTGCAG	1 cut(s)	245
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	1 cut(s)	229
BssMI	GATC	1 cut(s)	393
BssNI	GRCGYC	2 cut(s)	189, 323
BssSI	CACGAG	1 cut(s)	49
Bst2BI	CACGAG	1 cut(s)	49
BstACI	GRCGYC	2 cut(s)	189, 323
BstC8I	GCNNGC	2 cut(s)	27, 268
BstDEI	CTNAG	1 cut(s)	260
BstH2I	RGCGCY	1 cut(s)	134
BstHHI	GCGC	1 cut(s)	133
BstKTI	GATC	1 cut(s)	396
BstMAI	GTCTC	2 cut(s)	140, 314
BstMBI	GATC	1 cut(s)	393
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 276
BstNSI	RCATGY	1 cut(s)	126
BstSCI	CCNGG	1 cut(s)	199
BstSFI	CTRYAG	1 cut(s)	241
BstV1I	GCAGC	1 cut(s)	41
BtsIMutI	CAGTG	1 cut(s)	8
Cac8I	GCNNGC	2 cut(s)	27, 268
CfoI	GCGC	1 cut(s)	133
CseI	GACGC	2 cut(s)	197, 331
Csp6I	GTAC	1 cut(s)	376
CviAII	CATG	1 cut(s)	123
CviJI	RGCY	4 cut(s)	110, 169, 199, 389
CviKI_1	RGCY	4 cut(s)	110, 169, 199, 389
CviQI	GTAC	1 cut(s)	376
DdeI	CTNAG	1 cut(s)	260
DpnI	GATC	1 cut(s)	395
DpnII	GATC	1 cut(s)	393
EciI	GGCGGA	1 cut(s)	155
Eco24I	GRGCYC	1 cut(s)	201
EcoT38I	GRGCYC	1 cut(s)	201
Esp3I	CGTCTC	1 cut(s)	314
FaeI	CATG	1 cut(s)	126
FaiI	YATR	7 cut(s)	20, 44, 59, 124, 313, 315, 413
FalI	AAGNNNNNCTT	2 cut(s)	110, 142
FatI	CATG	1 cut(s)	122
FauNDI	CATATG	1 cut(s)	313
Fnu4HI	GCNGC	2 cut(s)	30, 153
FriOI	GRGCYC	1 cut(s)	201
Fsp4HI	GCNGC	2 cut(s)	30, 153
FspBI	CTAG	1 cut(s)	134
GlaI	GCGC	1 cut(s)	132
GluI	GCNGC	2 cut(s)	30, 153
HaeII	RGCGCY	1 cut(s)	134
HapII	CCGG	1 cut(s)	201
HgaI	GACGC	2 cut(s)	197, 331
HhaI	GCGC	1 cut(s)	133
Hin1I	GRCGYC	2 cut(s)	189, 323
Hin1II	CATG	1 cut(s)	126
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HinfI	GANTC	1 cut(s)	340
HpaII	CCGG	1 cut(s)	201
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	1 cut(s)	306
Hpy188III	TCNNGA	2 cut(s)	353, 383
Hpy8I	GTNNAC	1 cut(s)	160
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	1 cut(s)	283
HpyCH4V	TGCA	2 cut(s)	214, 243
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 276
HpyF3I	CTNAG	1 cut(s)	260
Hsp92I	GRCGYC	2 cut(s)	189, 323
Hsp92II	CATG	1 cut(s)	126
HspAI	GCGC	1 cut(s)	131
Kzo9I	GATC	1 cut(s)	393
LpnPI	CCDG	8 cut(s)	39, 179, 214, 229, 247, 252, 366, 368
Lsp1109I	GCAGC	1 cut(s)	41
LweI	GCATC	2 cut(s)	84, 237
MaeI	CTAG	1 cut(s)	134
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	1 cut(s)	395
MboI	GATC	1 cut(s)	393
MboII	GAAGA	1 cut(s)	223
MhlI	GDGCHC	1 cut(s)	201
MluCI	AATT	4 cut(s)	282, 299, 328, 364
MnlI	CCTC	4 cut(s)	45, 269, 379, 429
MspA1I	CMGCKG	1 cut(s)	169
MspI	CCGG	1 cut(s)	201
MspR9I	CCNGG	1 cut(s)	201
MwoI	GCNNNNNNNGC	2 cut(s)	137, 276
NciI	CCSGG	1 cut(s)	201
NdeI	CATATG	1 cut(s)	313
NdeII	GATC	1 cut(s)	393
NlaIII	CATG	1 cut(s)	126
NlaIV	GGNNCC	2 cut(s)	6, 351
NmuCI	GTSAC	1 cut(s)	203
NspI	RCATGY	1 cut(s)	126
PfeI	GAWTC	1 cut(s)	340
PkrI	GCNGC	2 cut(s)	31, 154
PspN4I	GGNNCC	2 cut(s)	6, 351
PstI	CTGCAG	1 cut(s)	245
PvuII	CAGCTG	1 cut(s)	169
RsaI	GTAC	1 cut(s)	377
RsaNI	GTAC	1 cut(s)	376
SatI	GCNGC	2 cut(s)	30, 153
Sau3AI	GATC	1 cut(s)	393
ScrFI	CCNGG	1 cut(s)	201
SduI	GDGCHC	1 cut(s)	201
SetI	ASST	4 cut(s)	56, 171, 255, 294
SfaNI	GCATC	2 cut(s)	84, 237
SfcI	CTRYAG	1 cut(s)	241
Sse9I	AATT	4 cut(s)	282, 299, 328, 364
SsiI	CCGC	3 cut(s)	140, 152, 155
SspMI	CTAG	1 cut(s)	134
StyD4I	CCNGG	1 cut(s)	199
TasI	AATT	4 cut(s)	282, 299, 328, 364
TatI	WGTACW	1 cut(s)	375
TauI	GCSGC	1 cut(s)	155
TfiI	GAWTC	1 cut(s)	340
TscAI	CASTG	1 cut(s)	15
TseFI	GTSAC	1 cut(s)	203
TseI	GCWGC	1 cut(s)	29
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	2 cut(s)	46, 90
TspRI	CASTG	1 cut(s)	15
XapI	RAATTY	2 cut(s)	299, 328
XceI	RCATGY	1 cut(s)	126
XspI	CTAG	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.