Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0007842

Physical Location & Seq

Genomic Coordinates Reverse (-)

19969121 .. 19969561

Gene Structure 441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g17660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGTGCCACTGAAAGACATAGTGCCAGCAGCACAGAACAACATAAACACAAGGTTCATACTTTTGGACAAAGGCAGCGTCAAGACTACAACTACGACCTCATCACAAACCCAAAACAAGACGTGCCTGGCGCTAGTGGCGGACGAGACTGCAGCGGTTCACTTCCAGCTGTGGGGGAACGAGTGCGACGCCTTCGAGCCCGGTGACATCGTGCAGTTGAGCAATGGCATCTTCTCTTACTGCAGGAACAACCTTTTGCTCAGGGCAGGCAAGAGAGGCAAAATTGAGAAGGTTGGGGAGTTTCTGATGGCATATGTTGAGACCCCAAATTTGAGTGAGATTCGTTGGGTTCCTGACCCTAATAATTCCAAGAAGTACATTCAGGAGGCTGTGATCGATCCCCACATTCTCGTATATTTCCTCCCAAATACTAATCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

147

Amino Acids

16.31

Weight (kDa)

6.09

Isoelectric Point (pI)

38.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007842)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63690 AT5G63690
fragaria_vesca	FvH4_2g24470 FvH4_2g24470 FvH4_2g24470 FvH4_2g24470
malus_domestica	MD04G1200100.v1.1 MD12G1212600.v1.1
prunus_persica	Prupe.3G123100_v2.0.a1 Prupe.8G250400_v2.0.a1 Prupe.8G268000_v2.0.a1
pyrus_communis	pycom04g17660 pycom12g19880
rosa_chinensis	RchiOBHm_Chr6g0292311
rosa_laevigata	RLG00000012043
rosa_multiflora	Rmu_sc0001354.1_g000001 Rmu_sc0020608.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175220
rosa_rugosa	Rorug06G0225400
rosa_samantha	Rh6AG338800 Rh6BG345900 Rh6CG353000 Rh6DG338800
rosa_wichuraiana	Rw6G029490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AciI	CCGC	2 cut(s)	140, 155
AclWI	GGATC	1 cut(s)	392
AcsI	RAATTY	1 cut(s)	328
AcyI	GRCGYC	1 cut(s)	189
AfaI	GTAC	1 cut(s)	377
AfiI	CCNNNNNNNGG	1 cut(s)	172
AjiI	CACGTC	1 cut(s)	123
AjnI	CCWGG	1 cut(s)	126
AluBI	AGCT	1 cut(s)	169
AluI	AGCT	1 cut(s)	169
Alw26I	GTCTC	2 cut(s)	140, 314
AlwI	GGATC	1 cut(s)	392
ApeKI	GCWGC	3 cut(s)	29, 75, 152
ApoI	RAATTY	1 cut(s)	328
ArsI	GACNNNNNNTTYG	4 cut(s)	63, 95, 313, 345
AspLEI	GCGC	1 cut(s)	133
AsuC2I	CCSGG	1 cut(s)	201
AsuHPI	GGTGA	1 cut(s)	215
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	201
BbvI	GCAGC	3 cut(s)	41, 87, 164
BccI	CCATC	1 cut(s)	301
BciT130I	CCWGG	1 cut(s)	128
BcnI	CCSGG	1 cut(s)	201
BcoDI	GTCTC	2 cut(s)	140, 314
BfaI	CTAG	1 cut(s)	134
BfmI	CTRYAG	2 cut(s)	150, 241
BfoI	RGCGCY	1 cut(s)	134
BisI	GCNGC	3 cut(s)	30, 76, 153
BlsI	GCNGC	3 cut(s)	31, 77, 154
Bme1390I	CCNGG	2 cut(s)	128, 201
BmgBI	CACGTC	1 cut(s)	123
BmiI	GGNNCC	2 cut(s)	6, 351
BmrFI	CCNGG	2 cut(s)	128, 201
BmsI	GCATC	1 cut(s)	237
Bpu10I	CCTNAGC	1 cut(s)	260
BpuMI	CCSGG	1 cut(s)	201
Bsa29I	ATCGAT	1 cut(s)	396
BsaHI	GRCGYC	1 cut(s)	189
BsaI	GGTCTC	1 cut(s)	314
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse3DI	GCAATG	1 cut(s)	229
BseBI	CCWGG	1 cut(s)	128
BseCI	ATCGAT	1 cut(s)	396
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseMI	GCAATG	1 cut(s)	229
BseMII	CTCAG	1 cut(s)	274
BseXI	GCAGC	3 cut(s)	41, 87, 164
BsgI	GTGCAG	1 cut(s)	233
BshNI	GGYRCC	1 cut(s)	4
BshVI	ATCGAT	1 cut(s)	396
BsiSI	CCGG	1 cut(s)	201
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmAI	GTCTC	2 cut(s)	140, 314
Bso31I	GGTCTC	1 cut(s)	314
Bsp1286I	GDGCHC	1 cut(s)	201
Bsp143I	GATC	2 cut(s)	393, 397
BspACI	CCGC	2 cut(s)	140, 155
BspCNI	CTCAG	1 cut(s)	273
BspDI	ATCGAT	1 cut(s)	396
BspLI	GGNNCC	2 cut(s)	6, 351
BspMAI	CTGCAG	2 cut(s)	154, 245
BspPI	GGATC	1 cut(s)	392
BspT107I	GGYRCC	1 cut(s)	4
BspTNI	GGTCTC	1 cut(s)	314
BsrDI	GCAATG	1 cut(s)	229
BssMI	GATC	2 cut(s)	393, 397
BssNI	GRCGYC	1 cut(s)	189
Bst2UI	CCWGG	1 cut(s)	128
BstACI	GRCGYC	1 cut(s)	189
BstC8I	GCNNGC	2 cut(s)	27, 268
BstDEI	CTNAG	1 cut(s)	260
BstH2I	RGCGCY	1 cut(s)	134
BstHHI	GCGC	1 cut(s)	133
BstKTI	GATC	2 cut(s)	396, 400
BstMAI	GTCTC	2 cut(s)	140, 314
BstMBI	GATC	2 cut(s)	393, 397
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 276
BstNI	CCWGG	1 cut(s)	128
BstSCI	CCNGG	2 cut(s)	126, 199
BstSFI	CTRYAG	2 cut(s)	150, 241
BstV1I	GCAGC	3 cut(s)	41, 87, 164
Bsu15I	ATCGAT	1 cut(s)	396
BsuTUI	ATCGAT	1 cut(s)	396
BtrI	CACGTC	1 cut(s)	123
BtsIMutI	CAGTG	1 cut(s)	8
Cac8I	GCNNGC	2 cut(s)	27, 268
CfoI	GCGC	1 cut(s)	133
ClaI	ATCGAT	1 cut(s)	396
CseI	GACGC	2 cut(s)	67, 197
Csp6I	GTAC	1 cut(s)	376
CviAII	CATG	1 cut(s)	438
CviJI	RGCY	3 cut(s)	169, 199, 389
CviKI_1	RGCY	3 cut(s)	169, 199, 389
CviQI	GTAC	1 cut(s)	376
DdeI	CTNAG	1 cut(s)	260
DpnI	GATC	2 cut(s)	395, 399
DpnII	GATC	2 cut(s)	393, 397
EciI	GGCGGA	1 cut(s)	155
Eco24I	GRGCYC	1 cut(s)	201
Eco31I	GGTCTC	1 cut(s)	314
EcoRII	CCWGG	1 cut(s)	126
EcoT38I	GRGCYC	1 cut(s)	201
FaeI	CATG	1 cut(s)	441
FaiI	YATR	7 cut(s)	20, 44, 59, 313, 315, 415, 439
FatI	CATG	1 cut(s)	437
FauNDI	CATATG	1 cut(s)	313
Fnu4HI	GCNGC	3 cut(s)	30, 76, 153
FriOI	GRGCYC	1 cut(s)	201
Fsp4HI	GCNGC	3 cut(s)	30, 76, 153
FspBI	CTAG	1 cut(s)	134
GlaI	GCGC	1 cut(s)	132
GluI	GCNGC	3 cut(s)	30, 76, 153
HaeII	RGCGCY	1 cut(s)	134
HapII	CCGG	1 cut(s)	201
HgaI	GACGC	2 cut(s)	67, 197
HhaI	GCGC	1 cut(s)	133
Hin1I	GRCGYC	1 cut(s)	189
Hin1II	CATG	1 cut(s)	441
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HinfI	GANTC	1 cut(s)	340
HpaII	CCGG	1 cut(s)	201
HphI	GGTGA	1 cut(s)	215
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	1 cut(s)	306
Hpy188III	TCNNGA	3 cut(s)	82, 353, 383
Hpy8I	GTNNAC	1 cut(s)	160
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	2 cut(s)	202, 283
HpyCH4IV	ACGT	1 cut(s)	122
HpyCH4V	TGCA	3 cut(s)	152, 214, 243
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 276
HpyF3I	CTNAG	1 cut(s)	260
HpySE526I	ACGT	1 cut(s)	122
Hsp92I	GRCGYC	1 cut(s)	189
Hsp92II	CATG	1 cut(s)	441
HspAI	GCGC	1 cut(s)	131
Kzo9I	GATC	2 cut(s)	393, 397
Lsp1109I	GCAGC	3 cut(s)	41, 87, 164
LweI	GCATC	1 cut(s)	237
MaeI	CTAG	1 cut(s)	134
MaeII	ACGT	1 cut(s)	122
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	2 cut(s)	395, 399
MboI	GATC	2 cut(s)	393, 397
MboII	GAAGA	1 cut(s)	223
MhlI	GDGCHC	1 cut(s)	201
MluCI	AATT	3 cut(s)	282, 328, 364
MnlI	CCTC	4 cut(s)	109, 269, 379, 431
MspA1I	CMGCKG	2 cut(s)	155, 169
MspI	CCGG	1 cut(s)	201
MspR9I	CCNGG	2 cut(s)	128, 201
MvaI	CCWGG	1 cut(s)	128
MwoI	GCNNNNNNNGC	2 cut(s)	137, 276
NciI	CCSGG	1 cut(s)	201
NdeI	CATATG	1 cut(s)	313
NdeII	GATC	2 cut(s)	393, 397
NlaIII	CATG	1 cut(s)	441
NlaIV	GGNNCC	2 cut(s)	6, 351
NmuCI	GTSAC	1 cut(s)	203
PfeI	GAWTC	1 cut(s)	340
PkrI	GCNGC	3 cut(s)	31, 77, 154
Psp6I	CCWGG	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	126
PspN4I	GGNNCC	2 cut(s)	6, 351
PstI	CTGCAG	2 cut(s)	154, 245
PvuII	CAGCTG	1 cut(s)	169
RsaI	GTAC	1 cut(s)	377
RsaNI	GTAC	1 cut(s)	376
SatI	GCNGC	3 cut(s)	30, 76, 153
Sau3AI	GATC	2 cut(s)	393, 397
ScrFI	CCNGG	2 cut(s)	128, 201
SduI	GDGCHC	1 cut(s)	201
SetI	ASST	6 cut(s)	56, 101, 125, 171, 255, 294
SfaNI	GCATC	1 cut(s)	237
SfcI	CTRYAG	2 cut(s)	150, 241
Sse9I	AATT	3 cut(s)	282, 328, 364
SsiI	CCGC	2 cut(s)	140, 155
SspMI	CTAG	1 cut(s)	134
StyD4I	CCNGG	2 cut(s)	126, 199
TaiI	ACGT	1 cut(s)	125
TaqI	TCGA	2 cut(s)	195, 396
TasI	AATT	3 cut(s)	282, 328, 364
TatI	WGTACW	1 cut(s)	375
TfiI	GAWTC	1 cut(s)	340
TscAI	CASTG	1 cut(s)	15
TseFI	GTSAC	1 cut(s)	203
TseI	GCWGC	3 cut(s)	29, 75, 152
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	1 cut(s)	46
TspRI	CASTG	1 cut(s)	15
XapI	RAATTY	1 cut(s)	328
XspI	CTAG	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.