Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0007842

Physical Location & Seq

Genomic Coordinates Forward (+)

14732457 .. 14735203

Gene Structure 2747 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012043

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGAGAAAGACAACGTCTCCCGTTCCCCAAATACTGTTTCCAAGCCAACGGTCGCTGCGGCGATAATGTATTGGTCTGAACTCTGTGTACTTGGTGTCACTGAAGGCGCACCATGGATGGATCAAGAACTATCATCTCCAAAACGAGGCTCCCCTCGTCAATTTGATTCTGATCAGATTTGCACAGTTGAGAGACAAACCAAAAAGATGGTGTTACTGAAAGAAATAGTGCCGGCTGCACAGAACAACATAGACACAAAGTTCATACTTTTGGACAAAGGCAGCAAGACTATAGAAGGCCACAACAAGACGTGCTTGGCGCTTGTGGCCGACGAGACTGCTGCAGTTCACTTCCAGCTGTGGGGTGATGAATGTGATGCATTTGAGCCCGGCGACATTATACAGTTGGCTAATGGCATCTTCTCTTACAACAGGAACAATCTTGTGCTGAGGGCCGGCAAGAGAGGGAAAGTGGAGAAGGTTGGAGAGTTTACCATGGTTTTTGTTGAGACCCCCAATCTGAGTGAGATTCATTGGGTTCCTGACCCGAATAACTCGAACAAGTACATTCAGGATGCTGTGATTTCACCTCATTCGCGCATCTTTCCACCGAAATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

207

Amino Acids

23.04

Weight (kDa)

5.84

Isoelectric Point (pI)

52.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007842)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63690 AT5G63690
fragaria_vesca	FvH4_2g24470 FvH4_2g24470 FvH4_2g24470 FvH4_2g24470
malus_domestica	MD04G1200100.v1.1 MD12G1212600.v1.1
prunus_persica	Prupe.3G123100_v2.0.a1 Prupe.8G250400_v2.0.a1 Prupe.8G268000_v2.0.a1
pyrus_communis	pycom04g17660 pycom12g19880
rosa_chinensis	RchiOBHm_Chr6g0292311
rosa_laevigata	RLG00000012043
rosa_multiflora	Rmu_sc0001354.1_g000001 Rmu_sc0020608.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175220
rosa_rugosa	Rorug06G0225400
rosa_samantha	Rh6AG338800 Rh6BG345900 Rh6CG353000 Rh6DG338800
rosa_wichuraiana	Rw6G029490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	598
AciI	CCGC	1 cut(s)	59
AclWI	GGATC	1 cut(s)	129
AcoI	YGGCCR	1 cut(s)	327
AcuI	CTGAAG	1 cut(s)	123
AfaI	GTAC	2 cut(s)	90, 566
AfiI	CCNNNNNNNGG	2 cut(s)	146, 361
AjiI	CACGTC	1 cut(s)	312
AjuI	GAANNNNNNNTTGG	2 cut(s)	22, 54
AluBI	AGCT	1 cut(s)	358
AluI	AGCT	1 cut(s)	358
Alw26I	GTCTC	4 cut(s)	22, 187, 329, 503
AlwI	GGATC	1 cut(s)	129
AoxI	GGCC	3 cut(s)	298, 327, 453
ApeKI	GCWGC	4 cut(s)	56, 236, 282, 341
AspLEI	GCGC	3 cut(s)	110, 322, 600
AspS9I	GGNCC	1 cut(s)	453
AsuC2I	CCSGG	1 cut(s)	390
AsuHPI	GGTGA	2 cut(s)	377, 579
BanII	GRGCYC	1 cut(s)	390
BbvCI	CCTCAGC	1 cut(s)	449
BbvI	GCAGC	4 cut(s)	43, 223, 294, 328
BccI	CCATC	2 cut(s)	112, 202
BcgI	CGANNNNNNTGC	4 cut(s)	320, 323, 354, 357
BclI	TGATCA	1 cut(s)	172
BcnI	CCSGG	1 cut(s)	390
BcoDI	GTCTC	4 cut(s)	22, 187, 329, 503
BfmI	CTRYAG	2 cut(s)	291, 342
BfoI	RGCGCY	1 cut(s)	323
BisI	GCNGC	5 cut(s)	57, 60, 237, 283, 342
BlsI	GCNGC	5 cut(s)	58, 61, 238, 284, 343
Bme1390I	CCNGG	1 cut(s)	390
BmgBI	CACGTC	1 cut(s)	312
BmgT120I	GGNCC	1 cut(s)	453
BmiI	GGNNCC	2 cut(s)	151, 540
BmrFI	CCNGG	1 cut(s)	390
BmsI	GCATC	4 cut(s)	367, 426, 565, 609
Bpu10I	CCTNAGC	1 cut(s)	449
BpuMI	CCSGG	1 cut(s)	390
BsaBI	GATNNNNATC	1 cut(s)	171
BsaI	GGTCTC	1 cut(s)	503
BsaJI	CCNNGG	2 cut(s)	113, 495
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 361
Bse118I	RCCGGY	2 cut(s)	232, 455
Bse8I	GATNNNNATC	1 cut(s)	171
BseDI	CCNNGG	2 cut(s)	113, 495
BseGI	GGATG	2 cut(s)	123, 580
BseJI	GATNNNNATC	1 cut(s)	171
BseLI	CCNNNNNNNGG	2 cut(s)	146, 361
BseMII	CTCAG	2 cut(s)	440, 512
BseXI	GCAGC	4 cut(s)	43, 223, 294, 328
BsgI	GTGCAG	1 cut(s)	222
Bsh1236I	CGCG	1 cut(s)	598
Bsh1285I	CGRYCG	1 cut(s)	54
BshFI	GGCC	3 cut(s)	300, 329, 455
BsiEI	CGRYCG	1 cut(s)	54
BsiSI	CCGG	3 cut(s)	233, 390, 456
BslI	CCNNNNNNNGG	2 cut(s)	146, 361
BsmAI	GTCTC	4 cut(s)	22, 187, 329, 503
BsmBI	CGTCTC	1 cut(s)	22
BsnI	GGCC	3 cut(s)	300, 329, 455
Bso31I	GGTCTC	1 cut(s)	503
Bsp1286I	GDGCHC	1 cut(s)	390
Bsp143I	GATC	2 cut(s)	121, 172
Bsp19I	CCATGG	2 cut(s)	113, 495
BspACI	CCGC	1 cut(s)	59
BspANI	GGCC	3 cut(s)	300, 329, 455
BspCNI	CTCAG	2 cut(s)	441, 513
BspFNI	CGCG	1 cut(s)	598
BspLI	GGNNCC	2 cut(s)	151, 540
BspMAI	CTGCAG	1 cut(s)	346
BspPI	GGATC	1 cut(s)	129
BspTNI	GGTCTC	1 cut(s)	503
BsrFI	RCCGGY	2 cut(s)	232, 455
BssAI	RCCGGY	2 cut(s)	232, 455
BssECI	CCNNGG	2 cut(s)	113, 495
BssMI	GATC	2 cut(s)	121, 172
BssT1I	CCWWGG	2 cut(s)	113, 495
Bst4CI	ACNGT	4 cut(s)	37, 52, 187, 405
BstC8I	GCNNGC	2 cut(s)	234, 457
BstDEI	CTNAG	2 cut(s)	449, 521
BstDSI	CCRYGG	2 cut(s)	113, 495
BstF5I	GGATG	2 cut(s)	123, 580
BstFNI	CGCG	1 cut(s)	598
BstH2I	RGCGCY	1 cut(s)	323
BstHHI	GCGC	3 cut(s)	110, 322, 600
BstKTI	GATC	2 cut(s)	124, 175
BstMAI	GTCTC	4 cut(s)	22, 187, 329, 503
BstMBI	GATC	2 cut(s)	121, 172
BstMCI	CGRYCG	1 cut(s)	54
BstMWI	GCNNNNNNNGC	1 cut(s)	326
BstSCI	CCNGG	1 cut(s)	388
BstSFI	CTRYAG	2 cut(s)	291, 342
BstUI	CGCG	1 cut(s)	598
BstV1I	GCAGC	4 cut(s)	43, 223, 294, 328
BstXI	CCANNNNNNTGG	1 cut(s)	208
BsuRI	GGCC	3 cut(s)	300, 329, 455
BtgI	CCRYGG	2 cut(s)	113, 495
BtrI	CACGTC	1 cut(s)	312
BtsCI	GGATG	2 cut(s)	123, 580
BtsIMutI	CAGTG	1 cut(s)	99
Cac8I	GCNNGC	2 cut(s)	234, 457
CfoI	GCGC	3 cut(s)	110, 322, 600
Cfr10I	RCCGGY	2 cut(s)	232, 455
Cfr13I	GGNCC	1 cut(s)	453
Csp6I	GTAC	2 cut(s)	89, 565
CviAII	CATG	2 cut(s)	114, 496
CviJI	RGCY	9 cut(s)	46, 150, 236, 300, 329, 358, 388, 410, 455
CviKI_1	RGCY	9 cut(s)	46, 150, 236, 300, 329, 358, 388, 410, 455
CviQI	GTAC	2 cut(s)	89, 565
DdeI	CTNAG	2 cut(s)	449, 521
DpnI	GATC	2 cut(s)	123, 174
DpnII	GATC	2 cut(s)	121, 172
EaeI	YGGCCR	1 cut(s)	327
Eco130I	CCWWGG	2 cut(s)	113, 495
Eco24I	GRGCYC	1 cut(s)	390
Eco31I	GGTCTC	1 cut(s)	503
Eco57I	CTGAAG	1 cut(s)	123
EcoT14I	CCWWGG	2 cut(s)	113, 495
EcoT22I	ATGCAT	1 cut(s)	382
EcoT38I	GRGCYC	1 cut(s)	390
ErhI	CCWWGG	2 cut(s)	113, 495
Esp3I	CGTCTC	1 cut(s)	22
FaeI	CATG	2 cut(s)	117, 499
FaiI	YATR	6 cut(s)	115, 251, 266, 293, 401, 497
FalI	AAGNNNNNCTT	2 cut(s)	299, 331
FatI	CATG	2 cut(s)	113, 495
FbaI	TGATCA	1 cut(s)	172
Fnu4HI	GCNGC	5 cut(s)	57, 60, 237, 283, 342
FokI	GGATG	2 cut(s)	130, 587
FriOI	GRGCYC	1 cut(s)	390
Fsp4HI	GCNGC	5 cut(s)	57, 60, 237, 283, 342
GlaI	GCGC	3 cut(s)	109, 321, 599
GluI	GCNGC	5 cut(s)	57, 60, 237, 283, 342
HaeII	RGCGCY	1 cut(s)	323
HaeIII	GGCC	3 cut(s)	300, 329, 455
HapII	CCGG	3 cut(s)	233, 390, 456
HhaI	GCGC	3 cut(s)	110, 322, 600
Hin1II	CATG	2 cut(s)	117, 499
Hin6I	GCGC	3 cut(s)	108, 320, 598
HinP1I	GCGC	3 cut(s)	108, 320, 598
HinfI	GANTC	2 cut(s)	167, 529
HpaII	CCGG	3 cut(s)	233, 390, 456
HphI	GGTGA	2 cut(s)	377, 579
Hpy166II	GTNNAC	3 cut(s)	89, 349, 492
Hpy188I	TCNGA	4 cut(s)	79, 172, 177, 522
Hpy188III	TCNNGA	3 cut(s)	125, 542, 572
Hpy8I	GTNNAC	3 cut(s)	89, 349, 492
Hpy99I	CGWCG	1 cut(s)	335
HpyAV	CCTTC	3 cut(s)	98, 290, 472
HpyCH4III	ACNGT	4 cut(s)	37, 52, 187, 405
HpyCH4IV	ACGT	2 cut(s)	15, 311
HpyCH4V	TGCA	4 cut(s)	183, 239, 344, 380
HpyF10VI	GCNNNNNNNGC	1 cut(s)	326
HpyF3I	CTNAG	2 cut(s)	449, 521
HpySE526I	ACGT	2 cut(s)	15, 311
Hsp92II	CATG	2 cut(s)	117, 499
HspAI	GCGC	3 cut(s)	108, 320, 598
KroI	GCCGGC	2 cut(s)	232, 455
KroNI	GCCGGC	2 cut(s)	234, 457
Ksp22I	TGATCA	1 cut(s)	172
Kzo9I	GATC	2 cut(s)	121, 172
LmnI	GCTCC	1 cut(s)	155
LpnPI	CCDG	7 cut(s)	246, 368, 403, 418, 469, 555, 557
Lsp1109I	GCAGC	4 cut(s)	43, 223, 294, 328
LweI	GCATC	4 cut(s)	367, 426, 565, 609
MaeII	ACGT	2 cut(s)	15, 311
MaeIII	GTNAC	2 cut(s)	97, 213
MalI	GATC	2 cut(s)	123, 174
MboI	GATC	2 cut(s)	121, 172
MboII	GAAGA	1 cut(s)	412
MhlI	GDGCHC	1 cut(s)	390
MluCI	AATT	1 cut(s)	161
MmeI	TCCRAC	1 cut(s)	463
MnlI	CCTC	5 cut(s)	140, 165, 444, 458, 600
Mph1103I	ATGCAT	1 cut(s)	382
MroNI	GCCGGC	2 cut(s)	232, 455
MspA1I	CMGCKG	1 cut(s)	358
MspI	CCGG	3 cut(s)	233, 390, 456
MspR9I	CCNGG	1 cut(s)	390
MvnI	CGCG	1 cut(s)	598
MwoI	GCNNNNNNNGC	1 cut(s)	326
NaeI	GCCGGC	2 cut(s)	234, 457
NciI	CCSGG	1 cut(s)	390
NcoI	CCATGG	2 cut(s)	113, 495
NdeII	GATC	2 cut(s)	121, 172
NgoMIV	GCCGGC	2 cut(s)	232, 455
NlaIII	CATG	2 cut(s)	117, 499
NlaIV	GGNNCC	2 cut(s)	151, 540
NmuCI	GTSAC	1 cut(s)	97
NsiI	ATGCAT	1 cut(s)	382
PdiI	GCCGGC	2 cut(s)	234, 457
PfeI	GAWTC	2 cut(s)	167, 529
PflFI	GACNNNGTC	1 cut(s)	14
PkrI	GCNGC	5 cut(s)	58, 61, 238, 284, 343
PspN4I	GGNNCC	2 cut(s)	151, 540
PspPI	GGNCC	1 cut(s)	453
PsrI	GAACNNNNNNTAC	2 cut(s)	72, 104
PstI	CTGCAG	1 cut(s)	346
PsyI	GACNNNGTC	1 cut(s)	14
PvuII	CAGCTG	1 cut(s)	358
RsaI	GTAC	2 cut(s)	90, 566
RsaNI	GTAC	2 cut(s)	89, 565
SatI	GCNGC	5 cut(s)	57, 60, 237, 283, 342
Sau3AI	GATC	2 cut(s)	121, 172
Sau96I	GGNCC	1 cut(s)	453
ScrFI	CCNGG	1 cut(s)	390
SduI	GDGCHC	1 cut(s)	390
SetI	ASST	5 cut(s)	18, 314, 360, 483, 592
SfaNI	GCATC	4 cut(s)	367, 426, 565, 609
SfcI	CTRYAG	2 cut(s)	291, 342
Sse9I	AATT	1 cut(s)	161
SsiI	CCGC	1 cut(s)	59
SspI	AATATT	1 cut(s)	617
StyD4I	CCNGG	1 cut(s)	388
StyI	CCWWGG	2 cut(s)	113, 495
TaaI	ACNGT	4 cut(s)	37, 52, 187, 405
TaiI	ACGT	2 cut(s)	18, 314
TaqI	TCGA	1 cut(s)	557
TasI	AATT	1 cut(s)	161
TatI	WGTACW	2 cut(s)	88, 564
TauI	GCSGC	1 cut(s)	62
TfiI	GAWTC	2 cut(s)	167, 529
TscAI	CASTG	1 cut(s)	106
TseFI	GTSAC	1 cut(s)	97
TseI	GCWGC	4 cut(s)	56, 236, 282, 341
Tsp45I	GTSAC	1 cut(s)	97
TspDTI	ATGAA	3 cut(s)	253, 384, 521
TspRI	CASTG	1 cut(s)	106
Tth111I	GACNNNGTC	1 cut(s)	14
Zsp2I	ATGCAT	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.